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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN AKR1B10 COMPLEXED WITH NADP+ AND SULINDAC
 
Authors :  A. Cousido-Siah, F. X. Ruiz, A. Mitschler, I. Crespo, S. Porte, X. Pares J. Farres, A. Podjarny
Date :  11 Sep 14  (Deposition) - 14 Jan 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  X
Keywords :  Tim Barrel, Aldo-Keto Reductase, Oxidoreductase, Ari, Carboxylic Type, Cytosolic (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Cousido-Siah, F. X. Ruiz, I. Crespo, S. Porte, A. Mitschler, X. Pares, A. Podjarny, J. Farres
Structural Analysis Of Sulindac As An Inhibitor Of Aldose Reductase And Akr1B10.
Chem. Biol. Interact. V. 234 290 2015
PubMed-ID: 25532697  |  Reference-DOI: 10.1016/J.CBI.2014.12.018

(-) Compounds

Molecule 1 - ALDO-KETO REDUCTASE FAMILY 1 MEMBER B10
    ChainsX
    EC Number1.1.1.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneAKR1B10, AKR1B11
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymARL-1,ALDOSE REDUCTASE-LIKE,ALDOSE REDUCTASE-RELATED PROTEIN,HARP,SMALL INTESTINE REDUCTASE,SI REDUCTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1MLY7Mod. Amino AcidN-DIMETHYL-LYSINE
2MLZ8Mod. Amino AcidN-METHYL-LYSINE
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SUZ1Ligand/Ion[(1Z)-5-FLUORO-2-METHYL-1-{4-[METHYLSULFINYL]BENZYLIDENE}-1H-INDEN-3-YL]ACETIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY X:19 , THR X:20 , TRP X:21 , ASP X:44 , TYR X:49 , HIS X:111 , SER X:160 , ASN X:161 , GLN X:184 , TYR X:210 , SER X:211 , PRO X:212 , LEU X:213 , GLY X:214 , SER X:215 , PRO X:216 , ASP X:217 , ALA X:246 , ILE X:261 , PRO X:262 , MLY X:263 , SER X:264 , VAL X:265 , THR X:266 , ARG X:269 , GLU X:272 , ASN X:273 , SUZ X:402 , HOH X:507 , HOH X:524 , HOH X:527 , HOH X:528 , HOH X:592 , HOH X:617 , HOH X:701binding site for residue NAP X 401
2AC2SOFTWARETRP X:21 , VAL X:48 , TYR X:49 , HIS X:111 , PHE X:123 , TRP X:220 , CYS X:299 , LEU X:301 , NAP X:401 , HOH X:680binding site for residue SUZ X 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WEV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WEV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WEV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WEV)

(-) Exons   (0, 0)

(no "Exon" information available for 4WEV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain X from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eee..eee.......hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh...hhhhheeeeeehhhhhhhhhhhhhhhhhhhhhh...eeeeee..........................hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh.........eeeee......hhhhhhhhhhh..eeeee................hhhhhhhhhhhhhhh..hhhhhhhhhhhh...ee.....hhhhhhhhhh......hhhhhhhhhh.........hhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wev X   1 MATFVELSTKAkMPIVGLGTWKSPLGkVkEAVkVAIDAGYRHIDCAYVYQNEHEVGEAIQEkIQEkAVKREDLFIVSKLWPTFFERPLVRKAFEkTLkDLKLSYLDVYLIHWPQGFKSGDDLFPRDDKGNAIGGKATFLDAWEAMEELVDEGLVkALGVSNFSHFQIEKLLNKPGLkYKPVTNQVECHPYLTQEKLIQYCHSkGITVTAYSPLGSPDRPWAKPEDPSLLEDPkIKEIAAKHkkTAAQVLIRFHIQRNVIVIPkSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRACNLLQSSHLEDYPFNAEY 316
                                    10 |      20      | 30  |     40        50        60 |   |  70        80        90    |  100       110       120       130       140       150    |  160       170      |180       190       200  |    210       220       230  |    240 ||    250       260  |    270       280       290       300       310      
                                      12-MLZ         27-MLY |                           62-MLZ                           95-MLY                                                     155-MLZ               177-MLZ                   203-MLY                       233-MLZ  242-MLY              263-MLY                                                 
                                                       29-MLZ                               66-MLY                          98-MLZ                                                                                                                                          243-MLZ                                                                     
                                                           33-MLY                                                                                                                                                                                                                                                                                       

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WEV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WEV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WEV)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AK1BA_HUMAN | O602181zua 4ga8 4gab 4gq0 4gqg 4i5x 4icc 4jih 4jii 4xzl 4xzm 4xzn 5lik 5liu 5liw 5lix 5liy 5m2f

(-) Related Entries Specified in the PDB File

1zua