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(-) Description

Title :  CRYSTAL STRUCTURE OF TUBULIN-STATHMIN-TTL-ADP COMPLEX
 
Authors :  A. E. Prota, M. M. Magiera, M. Kuijpers, K. Bargsten, D. Frey, M. Wieser, C. C. Hoogenraad, R. A. Kammerer, C. Janke, M. O. Steinmetz
Date :  18 Dec 12  (Deposition) - 13 Feb 13  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Alpha-Tubulin, Beta-Tubulin, Ligase, Gtpase, Microtubule, Stathmin, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. E. Prota, M. M. Magiera, M. Kuijpers, K. Bargsten, D. Frey, M. Wieser R. Jaussi, C. C. Hoogenraad, R. A. Kammerer, C. Janke, M. O. Steinmetz
Structural Basis Of Tubulin Tyrosination By Tubulin Tyrosin Ligase.
J. Cell Biol. V. 200 259 2013
PubMed-ID: 23358242  |  Reference-DOI: 10.1083/JCB.201211017

(-) Compounds

Molecule 1 - TUBULIN ALPHA-1B CHAIN
    Chains: A, C
    Organ: BRAIN
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: ALPHA-TUBULIN UBIQUITOUS, TUBULIN K-ALPHA-1, TUBULIN ALPHA- UBIQUITOUS CHAIN
 
Molecule 2 - TUBULIN BETA-2B CHAIN
    Chains: B, D
    Organ: BRAIN
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
 
Molecule 3 - STATHMIN-4
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3D
    Expression System Strain: NICO21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: STMN4
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: STATHMIN-LIKE PROTEIN B3, RB3
 
Molecule 4 - TUBULIN TYROSINE LIGASE, TTL
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PA23_007_GGTTL_KH6_2-378_NSKN1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TTL
    Organism Common: BANTAM,CHICKENS
    Organism Scientific: GALLUS GALLUS
    Organism Taxid: 9031

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 20)

Asymmetric/Biological Unit (8, 20)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CA4Ligand/IonCALCIUM ION
3CL1Ligand/IonCHLORIDE ION
4GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
5GOL1Ligand/IonGLYCEROL
6GTP2Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
7MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
8MG7Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:601 , HOH A:602 , HOH A:613 , HOH A:642 , HOH A:681 , HOH A:683 , HOH A:700 , HOH A:758 , LYS B:254BINDING SITE FOR RESIDUE GTP A 501
02AC2SOFTWAREGTP A:501 , HOH A:602 , HOH A:681 , HOH A:683 , HOH A:811BINDING SITE FOR RESIDUE MG A 502
03AC3SOFTWAREASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:702BINDING SITE FOR RESIDUE CA A 503
04AC4SOFTWARETYR A:161 , GLY A:162 , LYS A:163 , LYS A:164BINDING SITE FOR RESIDUE CL A 504
05AC5SOFTWAREHOH A:679 , HOH A:710 , ASP E:44BINDING SITE FOR RESIDUE CA A 505
06AC6SOFTWAREGLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , MG B:502 , HOH B:601 , HOH B:602 , HOH B:605 , HOH B:671 , HOH B:672 , HOH B:676 , HOH B:786BINDING SITE FOR RESIDUE GDP B 501
07AC7SOFTWAREGLN B:11 , GDP B:501 , HOH B:621 , HOH B:681 , HOH B:785 , HOH B:786 , HOH C:782BINDING SITE FOR RESIDUE MG B 502
08AC8SOFTWAREGLU B:113 , HOH B:670 , HOH B:698 , HOH B:701 , GLU C:284BINDING SITE FOR RESIDUE CA B 503
09AC9SOFTWAREARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , MET B:166 , ASN B:197 , ASP B:199 , ARG B:253BINDING SITE FOR RESIDUE MES B 504
10BC1SOFTWAREPHE B:296 , ASP B:297 , SER B:298 , ARG B:308 , VAL B:335 , ASN B:339 , TYR B:342 , HOH B:717 , HOH B:744 , HOH B:761BINDING SITE FOR RESIDUE MES B 505
11BC2SOFTWAREGLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:650 , HOH C:675 , HOH C:764 , HOH C:766 , HOH C:772 , HOH C:779 , HOH C:807 , HOH C:852 , LYS D:254BINDING SITE FOR RESIDUE GTP C 501
12BC3SOFTWAREGTP C:501 , HOH C:764 , HOH C:779 , HOH C:807 , HOH C:959BINDING SITE FOR RESIDUE MG C 502
13BC4SOFTWAREASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:780BINDING SITE FOR RESIDUE CA C 503
14BC5SOFTWAREGLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , MG D:601 , MG D:602 , HOH D:705 , HOH D:721 , HOH D:761 , HOH D:795 , HOH D:806 , HOH D:807BINDING SITE FOR RESIDUE GDP D 600
15BC6SOFTWAREGLN D:11 , GDP D:600BINDING SITE FOR RESIDUE MG D 601
16BC7SOFTWAREASN D:101 , GDP D:600 , HOH D:795 , HOH D:806 , HOH D:807BINDING SITE FOR RESIDUE MG D 602
17BC8SOFTWAREHOH A:817 , ASP F:318 , GLU F:331 , ADP F:703 , HOH F:867BINDING SITE FOR RESIDUE MG F 701
18BC9SOFTWAREGLU F:331 , ASN F:333 , ADP F:703 , HOH F:867BINDING SITE FOR RESIDUE MG F 702
19CC1SOFTWARELYS F:74 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , HIS F:239 , LEU F:240 , THR F:241 , ASN F:242 , ILE F:330 , GLU F:331 , MG F:701 , MG F:702BINDING SITE FOR RESIDUE ADP F 703
20CC2SOFTWARETYR F:211 , ARG F:292 , MET F:296 , LEU F:378 , HIS F:379 , HIS F:380 , HIS F:381BINDING SITE FOR RESIDUE GOL F 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IHJ)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Ala A:273 -Pro A:274
2Ala B:273 -Pro B:274
3Ala C:273 -Pro C:274
4Ala D:273 -Pro D:274
5Glu F:193 -Pro F:194
6Glu F:258 -Gly F:259
7Pro F:371 -Thr F:372

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IHJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IHJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IHJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4ihja1 A:1-245 automated matches                                                                                                                                                                                                                    d4ihja2 A:246-450 automated matches                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhhh......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee.............hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhh...........eeeeeeee................eeeeeeeee..hhhhhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj A   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSGEE 450
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       448  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                439|  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 448  


Chain B from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ihjb1 B:1-245 automated matches                                                                                                                                                                                                                  d4ihjb2 B:246-438 automated matches                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh..........hhhhh.hhhh.eeee...eeee.eeeee..hhhhhhhhhh......hhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.hhhhh...hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee.......hhhhhhhhhhhhhhh....hhhhh.eeeeeeeee...hhhhhhhhhhhhhhhhhhhh.......eeeeee.........eeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj B   1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 438
                                    10        20        30        40 ||     52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272    || 288       298       308       318       328       338       348       358 ||    376       386       396       406       416       426       436  
                                                                    42|                                                                                                                                                                                                                                     277|                                                                         360|                                                                     
                                                                     45                                                                                                                                                                                                                                      284                                                                          369                                                                     


Chain C from PDB  Type:PROTEIN  Length:440
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4ihjc1 C:1-245 automated matches                                                                                                                                                                                                                    d4ihjc2 C:246-440 automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhh.eee.....eee.eeeee..hhhhhhhhhh......hhh.eee.......hhhhhhh.hhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh........eeeee...hhhhhh....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhh..............eeeee................eeeeeeeee..hhhhhhhhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj C   1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440


Chain D from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ihjd1 D:2-245 automated matches                                                                                                                                                                                                                 d4ihjd2 D:246-441 automated matches                                                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhh...........hhhhh.hhhh.eeee...eeee.eeeee...hhhhhhhhhhhhhh.hhh.eee.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhhhh....hhhhh.eeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.......eeeeee........eeeeeeeee..hhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj D   2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSLTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 441
                                    11        21        31        41||      53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  |||  291       301       311       321       331       341       351       369       379       389       399       409       419       429       439  
                                                                   42|                                                                                                                                                                                                                                    276||                                                                       360|                                                                        
                                                                    45                                                                                                                                                                                                                                     280|                                                                        369                                                                        
                                                                                                                                                                                                                                                                                                            286                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains d4ihje_ E: Stathmin 4                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj E   6 MEVIELNKCTSGQSFEVILKPPSDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 141
                                    15        25  ||    50        60        70        80        90       100       110       120       130       140 
                                                 28|                                                                                                 
                                                  44                                                                                                 


Chain F from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhhh.eee.........eee......hhhhh........ee....hhhhh.hhhhhhhhhhhh............eeee....hhhhhhhhhhhhhhhh....eeee...eee.hhhhhhhhhhh.eeeee............eeeeeeeeeee.....eeee...eeeeeeee..............hhhhhh.............eeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhh...........eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ihj F   1 MYTFVVRDENSSVYAEVSRLLLATGQWKRLRKDNPRFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTDEREVFLAAYNRRREGREGNVWIAKSSILISSEASELLDFIDEVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLAPTSIFIKLHHHHHH 384
                                    10        20        30        40        50        60        70        80        90       100 ||    132       142       152|      169     ||182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362|      380    
                                                                                                                               102|                        152|            175|                                                                                                                                                                                    362|             
                                                                                                                                125                         160             179                                                                                                                                                                                     371
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IHJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IHJ)

(-) Gene Ontology  (31, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ala A:273 - Pro A:274   [ RasMol ]  
    Ala B:273 - Pro B:274   [ RasMol ]  
    Ala C:273 - Pro C:274   [ RasMol ]  
    Ala D:273 - Pro D:274   [ RasMol ]  
    Glu F:193 - Pro F:194   [ RasMol ]  
    Glu F:258 - Gly F:259   [ RasMol ]  
    Pro F:371 - Thr F:372   [ RasMol ]  
 

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  4ihj
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  E1BQ43_CHICK | E1BQ43
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  STMN4_RAT | P63043
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  TBA1B_BOVIN | P81947
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  TBB2B_BOVIN | Q6B856
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E1BQ43_CHICK | E1BQ43: 5njh 5o7a
        STMN4_RAT | P63043: 1sa0 1sa1 1z2b 3du7 3e22 3hkb 3hkc 3hkd 3hke 3n2g 3n2k 3ryc 3ryf 3ryh 3ryi 3ut5 4eb6 4i4t 4i50 4i55 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4x1i 4x1k 4x1y 4x20 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5j2u 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBA1B_BOVIN | P81947: 3dco 3edl 3iz0 3j1t 3j1u 3j2u 4i4t 4i50 4i55 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5bmv 5eib 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
        TBB2B_BOVIN | Q6B856: 1sa0 1sa1 1tvk 1z2b 2p4n 2wbe 2xrp 3dco 3du7 3e22 3iz0 3j1t 3j1u 3j2u 4aqv 4aqw 4atu 4atx 4ck5 4ck6 4ck7 4i4t 4i50 4i55 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4uxo 4uxp 4uxr 4uxs 4uxt 4uxy 4uy0 4wbn 4yj2 4yj3 5eib 5ezy 5gon 5hnw 5hnx 5hny 5hnz 5itz 5iyz 5j2t 5j2u 5jh7 5jvd 5la6 5lov 5lp6 5lxt 5lyj 5m5i 5m5l 5m5m 5m5n 5m5o 5m7e 5m7g 5m8d 5m8g 5njh 5o7a
UniProtKB/TrEMBL
        E1BQ43_CHICK | E1BQ43: 4i4t 4i50 4i55 4iij 4o2a 4o2b 4o4h 4o4i 4o4j 4o4l 4tuy 4tv8 4tv9 4wbn 4yj2 4yj3 4zhq 4zi7 4zol 5bmv 5c8y 5ca0 5ca1 5cb4 5ezy 5fnv 5gon 5iyz 5j2t 5jh7 5jqg 5jvd 5kx5 5la6 5lov 5lp6 5lxt 5lyj 5m7e 5m7g 5m8d 5m8g

(-) Related Entries Specified in the PDB File

4i4t THE SAME PROTEIN IN COMPLEX WITH ZAMPANOLIDE
4i50 THE SAME PROTEIN IN COMPLEX WITH EPOTHILONE A
4i55 THE SAME PROTEIN IN COMPLEX WITH AMPPCP
4iij THE SAME PROTEIN IN ABSENCE OF NUCLEOTIDE IN CHAIN F