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3ZRY
Biol. Unit 1
Info
Asym.Unit (618 KB)
Biol.Unit 1 (505 KB)
Biol.Unit 2 (114 KB)
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(1)
Title
:
ROTOR ARCHITECTURE IN THE F(1)-C(10)-RING COMPLEX OF THE YEAST F-ATP SYNTHASE
Authors
:
M. -F. Giraud, A. Dautant
Date
:
21 Jun 11 (Deposition) - 18 Jan 12 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
6.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Biol. Unit 2: J,K,L,M,N,O,P,Q,R,S (1x)
Keywords
:
Hydrolase, Atp-Binding, F(1)-F(O)Atp Synthase, Mitochondria, Molecular Motor, Central Stalk, Membrane Protein, C-Ring
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. -F. Giraud, P. Paumard, C. Sanchez, D. Brethes, J. Velours, A. Dautant
Rotor Architecture In The Yeast And Bovine F(1)-C-Ring Complexes Of F-Atp Synthase.
J. Struct. Biol. V. 177 490 2012
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
1c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
1d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
1e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
5
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:174 , GLY A:176 , LYS A:177 , THR A:178 , ALA A:179 , PHE A:359 , ARG A:364 , GLN A:432 , ASN A:433 , GLN A:434 , MG A:700 , TYR D:368
BINDING SITE FOR RESIDUE ANP A 600
02
AC2
SOFTWARE
THR A:178 , ANP A:600
BINDING SITE FOR RESIDUE MG A 700
03
AC3
SOFTWARE
ARG B:173 , GLN B:174 , THR B:175 , GLY B:176 , LYS B:177 , THR B:178 , ALA B:179 , PHE B:359 , ARG B:364 , GLN B:432 , MG B:700
BINDING SITE FOR RESIDUE ANP B 600
04
AC4
SOFTWARE
THR B:178 , ASP B:271 , ANP B:600
BINDING SITE FOR RESIDUE MG B 700
05
AC5
SOFTWARE
ARG C:173 , GLN C:174 , THR C:175 , GLY C:176 , LYS C:177 , THR C:178 , ALA C:179 , GLU C:330 , ARG C:364 , GLN C:432 , GLN C:434 , MG C:700
BINDING SITE FOR RESIDUE ANP C 600
06
AC6
SOFTWARE
THR C:178 , ASP C:271 , ANP C:600
BINDING SITE FOR RESIDUE MG C 700
07
AC7
SOFTWARE
SER C:346 , ARG C:375 , GLY D:160 , VAL D:161 , GLY D:162 , LYS D:163 , THR D:164 , VAL D:165 , GLU D:189 , ARG D:190 , TYR D:345 , PHE D:418 , ALA D:421 , MG D:700
BINDING SITE FOR RESIDUE ANP D 600
08
AC8
SOFTWARE
THR D:164 , GLU D:189 , ARG D:190 , GLU D:193 , ANP D:600
BINDING SITE FOR RESIDUE MG D 700
09
AC9
SOFTWARE
ARG B:375 , GLY F:158 , ALA F:159 , GLY F:160 , VAL F:161 , GLY F:162 , LYS F:163 , THR F:164 , VAL F:165 , GLU F:189 , ARG F:190 , TYR F:345 , PRO F:346 , PHE F:418 , ALA F:421 , PHE F:424 , MG F:700
BINDING SITE FOR RESIDUE ANP F 600
10
BC1
SOFTWARE
LYS F:163 , THR F:164 , GLU F:189 , ASP F:256 , ANP F:600
BINDING SITE FOR RESIDUE MG F 700
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ATPG_YEAST_001 (S174I, chain G, )
2: VAR_ATPG_YEAST_002 (S275F, chain G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
5
UniProt
VAR_ATPG_YEAST_001
*
S
207
I
ATPG_YEAST
---
---
G
S
174
I
6
UniProt
VAR_ATPG_YEAST_002
*
S
308
F
ATPG_YEAST
---
---
G
S
275
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
2: ATPASE_GAMMA (G:263-276)
3: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_C
PS00605
ATP synthase c subunit signature.
ATP9_YEAST
38-59
0
-
-
-
-
-
-
-
-
-
-
2
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_YEAST
296-309
1
G:263-276
3
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_YEAST
379-388
3
D:346-355
E:346-355
F:346-355
ATPA_YEAST
400-409
3
A:365-374
B:365-374
C:365-374
[
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Exons
(0, 0)
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SCOP Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (618 KB)
Header - Asym.Unit
Biol.Unit 1 (505 KB)
Header - Biol.Unit 1
Biol.Unit 2 (114 KB)
Header - Biol.Unit 2
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