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(-) Description

Title :  CRYSTAL STRUCTURE OF FILAMIN-A IMMUNOGLOBULIN-LIKE REPEAT 21 BOUND TO AN N-TERMINAL PEPTIDE OF CFTR
 
Authors :  Z. Xu, R. Page, J. Qin, S. S. Ithychanda, J. M. Liu, S. Misra
Date :  27 Aug 09  (Deposition) - 07 Apr 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein-Peptide Complex, Acetylation, Actin-Binding, Alternative Splicing, Cytoplasm, Cytoskeleton, Disease Mutation, Phosphoprotein, Polymorphism, Atp-Binding, Chloride, Chloride Channel, Glycoprotein, Hydrolase, Ion Transport, Ionic Channel, Membrane, Nucleotide- Binding, Transmembrane, Transport, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Smith, R. C. Page, Z. Xu, E. Kohli, P. Litman, J. C. Nix, S. S. Ithychanda, J. Liu, J. Qin, S. Misra, C. M. Liedtke
Biochemical Basis Of The Interaction Between Cystic Fibrosis Transmembrane Conductance Regulator And Immunoglobulin-Like Repeats Of Filamin.
J. Biol. Chem. V. 285 17166 2010
PubMed-ID: 20351101  |  Reference-DOI: 10.1074/JBC.M109.080911

(-) Compounds

Molecule 1 - FILAMIN-A
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainROSETTA2(DE3)
    Expression System Taxid562
    Expression System Vector TypePGST-PARALLEL
    FragmentUNP RESIDUES 2236-2329
    GeneFLN, FLN-21, FLN1, FLNA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALPHA-FILAMIN, FILAMIN-1, ENDOTHELIAL ACTIN-BINDING PROTEIN, ACTIN-BINDING PROTEIN 280, ABP-280, NON-MUSCLE FILAMIN
 
Molecule 2 - CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR
    ChainsC
    EngineeredYES
    FragmentUNP RESIDUES 5-22
    MutationYES
    Other DetailsCFTR PEPTIDE
    Other Details - SourceSYNTHETIC PEPTIDE BASED ON THE SEQUENCE 5-22 OF HOMO SAPIENS CFTR (UNIPROT ENTRY P13569, CFTR_HUMAN)
    SynonymCFTR, CHANNEL CONDUCTANCE-CONTROLLING ATPASE, CAMP-DEPENDENT CHLORIDE CHANNEL, ATP-BINDING CASSETTE TRANSPORTER SUB-FAMILY C MEMBER 7
    SyntheticYES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ISW)

(-) Sites  (0, 0)

(no "Site" information available for 3ISW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ISW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:2319 -Pro A:2320
2Ser B:2319 -Pro B:2320

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_000101S13FCFTR_HUMANDisease (CF)397508635CS13F

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNA_HUMAN276-374
376-474
475-570
571-663
667-763
764-866
867-965
966-1061
1062-1154
1155-1249
1250-1349
1350-1442
1443-1539
1540-1636
1649-1740
1779-1860
1860-1952
1950-2039
2042-2134
2132-2230
2233-2325
2327-2420
 
2424-2516
2552-2646
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:2327-2328
B:2327-2329
-
-

(-) Exons   (5, 8)

Asymmetric/Biological Unit (5, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000000030843aENSE00001343851chr7:117120017-117120201185CFTR_HUMAN1-18181C:5-1814
1.4ENST000000030844ENSE00001708957chr7:117144307-117144417111CFTR_HUMAN18-55381C:18-225
1.5ENST000000030845ENSE00001778965chr7:117149088-117149196109CFTR_HUMAN55-91370--
1.6bENST000000030846bENSE00000718611chr7:117170953-117171168216CFTR_HUMAN92-163720--
1.7ENST000000030847ENSE00000718620chr7:117174330-11717441990CFTR_HUMAN164-193300--
1.8ENST000000030848ENSE00000718626chr7:117175302-117175465164CFTR_HUMAN194-248550--
1.9ENST000000030849ENSE00000718630chr7:117176602-117176727126CFTR_HUMAN248-290430--
1.10ENST0000000308410ENSE00000718634chr7:117180154-117180400247CFTR_HUMAN290-372830--
1.11ENST0000000308411ENSE00000718637chr7:117182070-11718216293CFTR_HUMAN373-403310--
1.12ENST0000000308412ENSE00001738590chr7:117188695-117188877183CFTR_HUMAN404-464610--
1.13aENST0000000308413aENSE00000718648chr7:117199518-117199709192CFTR_HUMAN465-528640--
1.15bENST0000000308415bENSE00000718654chr7:117227793-11722788795CFTR_HUMAN529-560320--
1.16ENST0000000308416ENSE00000718660chr7:117230407-11723049387CFTR_HUMAN560-589300--
1.17ENST0000000308417ENSE00000718666chr7:117231988-117232711724CFTR_HUMAN589-8302420--
1.18ENST0000000308418ENSE00000718674chr7:117234984-117235112129CFTR_HUMAN831-873430--
1.19ENST0000000308419ENSE00001015963chr7:117242880-11724291738CFTR_HUMAN874-886130--
1.20ENST0000000308420ENSE00000977441chr7:117243586-117243836251CFTR_HUMAN886-970850--
1.21ENST0000000308421ENSE00000977442chr7:117246728-11724680780CFTR_HUMAN970-996270--
1.22ENST0000000308422ENSE00000718690chr7:117250573-117250723151CFTR_HUMAN997-1047510--
1.23aENST0000000308423aENSE00000977443chr7:117251635-117251862228CFTR_HUMAN1047-1123770--
1.24ENST0000000308424ENSE00000718699chr7:117254667-117254767101CFTR_HUMAN1123-1156340--
1.25aENST0000000308425aENSE00000718704chr7:117267576-117267824249CFTR_HUMAN1157-1239830--
1.26ENST0000000308426ENSE00000718708chr7:117282492-117282647156CFTR_HUMAN1240-1291520--
1.27ENST0000000308427ENSE00000718713chr7:117292896-11729298590CFTR_HUMAN1292-1321300--
1.28ENST0000000308428ENSE00000718718chr7:117304742-117304914173CFTR_HUMAN1322-1379580--
1.29ENST0000000308429ENSE00000718724chr7:117305513-117305618106CFTR_HUMAN1379-1414360--
1.30bENST0000000308430bENSE00001918100chr7:117306962-1173087151754CFTR_HUMAN1415-1480660--

2.1bENST000003698501bENSE00001910769X:153602994-153602874121FLNA_HUMAN-00--
2.2aENST000003698502aENSE00001451045X:153599729-153599241489FLNA_HUMAN1-1251250--
2.3ENST000003698503ENSE00001761667X:153596458-153596210249FLNA_HUMAN125-208840--
2.4ENST000003698504ENSE00001600780X:153596106-15359600998FLNA_HUMAN208-240330--
2.5ENST000003698505ENSE00001593508X:153595912-153595765148FLNA_HUMAN241-290500--
2.6ENST000003698506ENSE00001766993X:153595218-153595100119FLNA_HUMAN290-329400--
2.7ENST000003698507ENSE00001785883X:153595007-15359493078FLNA_HUMAN330-355260--
2.8ENST000003698508ENSE00001609326X:153594838-153594676163FLNA_HUMAN356-410550--
2.9ENST000003698509ENSE00001666330X:153594592-153594392201FLNA_HUMAN410-477680--
2.10ENST0000036985010ENSE00001801647X:153593854-153593717138FLNA_HUMAN477-523470--
2.11aENST0000036985011aENSE00001611867X:153593627-153593504124FLNA_HUMAN523-564420--
2.12aENST0000036985012aENSE00001667367X:153593325-153593189137FLNA_HUMAN564-610470--
2.12cENST0000036985012cENSE00001629480X:153593087-153592894194FLNA_HUMAN610-674650--
2.13ENST0000036985013ENSE00001779880X:153592740-153592627114FLNA_HUMAN675-712380--
2.14ENST0000036985014ENSE00001608264X:153592533-153592390144FLNA_HUMAN713-760480--
2.15ENST0000036985015ENSE00001763171X:153591152-153591029124FLNA_HUMAN761-802420--
2.16ENST0000036985016ENSE00001721592X:153590946-153590786161FLNA_HUMAN802-855540--
2.17ENST0000036985017ENSE00001711674X:153590700-15359061091FLNA_HUMAN856-886310--
2.18ENST0000036985018ENSE00001671781X:153590516-153590347170FLNA_HUMAN886-942570--
2.19ENST0000036985019ENSE00001747813X:153590155-153590038118FLNA_HUMAN943-982400--
2.20ENST0000036985020ENSE00001730581X:153589938-153589676263FLNA_HUMAN982-1069880--
2.21aENST0000036985021aENSE00001650468X:153588955-153588358598FLNA_HUMAN1070-12692000--
2.22ENST0000036985022ENSE00001799214X:153588273-153588100174FLNA_HUMAN1269-1327590--
2.23aENST0000036985023aENSE00001747211X:153588014-153587852163FLNA_HUMAN1327-1381550--
2.24ENST0000036985024ENSE00001776303X:153587774-153587614161FLNA_HUMAN1381-1435550--
2.25ENST0000036985025ENSE00001730699X:153587522-153587352171FLNA_HUMAN1435-1492580--
2.26bENST0000036985026bENSE00001594409X:153586936-153586813124FLNA_HUMAN1492-1533420--
2.27ENST0000036985027ENSE00001770199X:153586723-153586567157FLNA_HUMAN1533-1585530--
2.28bENST0000036985028bENSE00001690672X:153585991-153585802190FLNA_HUMAN1586-1649640--
2.29ENST0000036985029ENSE00001616004X:153585642-15358561924FLNA_HUMAN1649-165790--
2.30aENST0000036985030aENSE00001716324X:153583440-153583193248FLNA_HUMAN1657-1739830--
2.31aENST0000036985031aENSE00001764396X:153583079-15358298496FLNA_HUMAN1740-1771320--
2.32ENST0000036985032ENSE00001736547X:153582851-153582749103FLNA_HUMAN1772-1806350--
2.33aENST0000036985033aENSE00001766949X:153582659-153582519141FLNA_HUMAN1806-1853480--
2.33cENST0000036985033cENSE00001653383X:153582411-153582283129FLNA_HUMAN1853-1896440--
2.34aENST0000036985034aENSE00001618870X:153582095-153581922174FLNA_HUMAN1896-1954590--
2.35bENST0000036985035bENSE00002195079X:153581825-153581664162FLNA_HUMAN1954-2008550--
2.36bENST0000036985036bENSE00001723855X:153581572-153581369204FLNA_HUMAN2008-2076690--
2.36eENST0000036985036eENSE00001619614X:153581292-153581140153FLNA_HUMAN2076-2127520--
2.36hENST0000036985036hENSE00001651775X:153581043-153580921123FLNA_HUMAN2127-2168420--
2.37ENST0000036985037ENSE00001674826X:153580815-153580549267FLNA_HUMAN2168-2257902A:2236-2257
B:2236-2257
22
22
2.38aENST0000036985038aENSE00001618637X:153580389-153580252138FLNA_HUMAN2257-2303472A:2257-2303
B:2257-2303
47
47
2.39aENST0000036985039aENSE00002154533X:153580064-153579949116FLNA_HUMAN2303-2341392A:2303-2328
B:2303-2329
26
27
2.39dENST0000036985039dENSE00001796872X:153579409-153579277133FLNA_HUMAN2342-2386450--
2.39fENST0000036985039fENSE00001667055X:153578575-153578399177FLNA_HUMAN2386-2445600--
2.39gENST0000036985039gENSE00001781401X:153578235-153578017219FLNA_HUMAN2445-2518740--
2.40ENST0000036985040ENSE00001665083X:153577933-153577730204FLNA_HUMAN2518-2586690--
2.41dENST0000036985041dENSE00001866943X:153577404-153577016389FLNA_HUMAN2586-2647620--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:93
 aligned with FLNA_HUMAN | P21333 from UniProtKB/Swiss-Prot  Length:2647

    Alignment length:93
                                  2245      2255      2265      2275      2285      2295      2305      2315      2325   
          FLNA_HUMAN   2236 GGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
               SCOP domains d3iswa_ A: automated matches                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhh.ee....eeeeee......eeeeeeeee...eeeeeee.....eeeeeee...eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FILAMIN_REPEAT  PDB: - UniProt: 2233-2325                                                 -FI PROSITE
           Transcript 2 (1) Exon 2.37 [INCOMPLETE]---------------------------------------------Exon 2.39a [INCOMPLETE]    Transcript 2 (1)
           Transcript 2 (2) ---------------------Exon 2.38a  PDB: A:2257-2303 UniProt: 2257-2303------------------------- Transcript 2 (2)
                3isw A 2236 GGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                                  2245      2255      2265      2275      2285      2295      2305      2315      2325   

Chain B from PDB  Type:PROTEIN  Length:94
 aligned with FLNA_HUMAN | P21333 from UniProtKB/Swiss-Prot  Length:2647

    Alignment length:94
                                  2245      2255      2265      2275      2285      2295      2305      2315      2325    
          FLNA_HUMAN   2236 GGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPS 2329
               SCOP domains d3iswb_ B: automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhh.ee....eeeeee........eeeeeee...eeeeeeee...eeeeeeee...eeeeeeeee..ee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FILAMIN_REPEAT  PDB: - UniProt: 2233-2325                                                 -FIL PROSITE
           Transcript 2 (1) Exon 2.37 [INCOMPLETE]---------------------------------------------Exon 2.39a  PDB: B:2303-232 Transcript 2 (1)
           Transcript 2 (2) ---------------------Exon 2.38a  PDB: B:2257-2303 UniProt: 2257-2303-------------------------- Transcript 2 (2)
                3isw B 2236 GGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPS 2329
                                  2245      2255      2265      2275      2285      2295      2305      2315      2325    

Chain C from PDB  Type:PROTEIN  Length:18
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:18
                                    14        
          CFTR_HUMAN      5 PLEKASVVSKLFFSWTRP   22
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------F--------- SAPs(SNPs)
                    PROSITE ------------------ PROSITE
           Transcript 1 (1) Exon 1.3a     ---- Transcript 1 (1)
           Transcript 1 (2) -------------1.4   Transcript 1 (2)
                3isw C    5 PLEKASVVSKLFFSWTAP   22
                                    14        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3ISW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ISW)

(-) Gene Ontology  (109, 116)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (FLNA_HUMAN | P21333)
molecular function
    GO:0034988    Fc-gamma receptor I complex binding    Interacting selectively and non-covalently with one or more specific sites on the Fc-gamma receptor I complex. The complex functions primarily as an activating receptor for IgG.
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0051020    GTPase binding    Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
    GO:0048365    Rac GTPase binding    Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases.
    GO:0017160    Ral GTPase binding    Interacting selectively and non-covalently with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases.
    GO:0017048    Rho GTPase binding    Interacting selectively and non-covalently with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton.
    GO:0046332    SMAD binding    Interacting selectively and non-covalently with a SMAD signaling protein.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0031852    mu-type opioid receptor binding    Interacting selectively and non-covalently with a mu-type opioid receptor.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0031267    small GTPase binding    Interacting selectively and non-covalently with a small monomeric GTPase.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0051764    actin crosslink formation    The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes.
    GO:0031532    actin cytoskeleton reorganization    A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0007195    adenylate cyclase-inhibiting dopamine receptor signaling pathway    The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP).
    GO:0034329    cell junction assembly    A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction.
    GO:0030030    cell projection organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0051220    cytoplasmic sequestering of protein    The selective interaction of a protein with specific molecules in the cytoplasm, thereby inhibiting its transport into other areas of the cell.
    GO:0045184    establishment of protein localization    The directed movement of a protein to a specific location.
    GO:0042789    mRNA transcription from RNA polymerase II promoter    The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
    GO:0090307    mitotic spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0042177    negative regulation of protein catabolic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0043433    negative regulation of sequence-specific DNA binding transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0016479    negative regulation of transcription from RNA polymerase I promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase I promoter.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0070527    platelet aggregation    The adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:2001046    positive regulation of integrin-mediated signaling pathway    Any process that activates or increases the frequency, rate or extent of integrin-mediated signaling pathway.
    GO:1900026    positive regulation of substrate adhesion-dependent cell spreading    Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading.
    GO:0042993    positive regulation of transcription factor import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.
    GO:0034394    protein localization to cell surface    A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane.
    GO:0050821    protein stabilization    Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
    GO:0043113    receptor clustering    The receptor metabolic process that results in grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
    GO:0071526    semaphorin-plexin signaling pathway    A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand.
    GO:0044319    wound healing, spreading of cells    The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface.
cellular component
    GO:0031523    Myb complex    A multisubunit complex consisting of Myb and other proteins that regulates site specific DNA replication, gene amplification and transcriptional repression.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005884    actin filament    A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
    GO:0097440    apical dendrite    A dendrite that emerges near the apical pole of a neuron. In bipolar neurons, apical dendrites are located on the opposite side of the soma from the axon.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005911    cell-cell junction    A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
    GO:0030863    cortical cytoskeleton    The portion of the cytoskeleton that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0043198    dendritic shaft    Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0031941    filamentous actin    A two-stranded helical polymer of the protein actin.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain C   (CFTR_HUMAN | P13569)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042626    ATPase activity, coupled to transmembrane movement of substances    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
    GO:0043225    ATPase-coupled anion transmembrane transporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + anion(out) = ADP + phosphate + anion(in).
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0015106    bicarbonate transmembrane transporter activity    Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.
    GO:0005254    chloride channel activity    Enables the facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
    GO:0019869    chloride channel inhibitor activity    Stops, prevents, or reduces the activity of a chloride channel.
    GO:0017081    chloride channel regulator activity    Modulates the activity of a chloride channel.
    GO:0015108    chloride transmembrane transporter activity    Enables the transfer of chloride ions from one side of a membrane to the other.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005260    intracellular ATPase-gated chloride channel activity    Enables passage of a chloride ion through a transmembrane channel that opens when intracellular ATP is bound and hydrolysed. Passage is via passive diffusion once the channel is open.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0015701    bicarbonate transport    The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0071320    cellular response to cAMP    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:1902476    chloride transmembrane transport    The directed movement of chloride across a membrane.
    GO:0006821    chloride transport    The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006695    cholesterol biosynthetic process    The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0030301    cholesterol transport    The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051454    intracellular pH elevation    Any process that increases the internal pH of a cell, measured by the concentration of the hydrogen ion.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0060081    membrane hyperpolarization    The process in which membrane potential increases with respect to its steady-state potential, usually from negative potential to a more negative potential. For example, during the repolarization phase of an action potential the membrane potential often becomes more negative or hyperpolarized before returning to the steady-state resting potential.
    GO:1902161    positive regulation of cyclic nucleotide-gated ion channel activity    Any process that activates or increases the frequency, rate or extent of cyclic nucleotide-gated ion channel activity.
    GO:0045921    positive regulation of exocytosis    Any process that activates or increases the frequency, rate or extent of exocytosis.
    GO:0035774    positive regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:1902943    positive regulation of voltage-gated chloride channel activity    Any process that activates or increases the frequency, rate or extent of voltage-gated chloride channel activity.
    GO:0007585    respiratory gaseous exchange    The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.
    GO:0048240    sperm capacitation    A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0006904    vesicle docking involved in exocytosis    The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
cellular component
    GO:0030660    Golgi-associated vesicle membrane    The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0034707    chloride channel complex    An ion channel complex through which chloride ions pass.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0031205    endoplasmic reticulum Sec complex    An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFTR_HUMAN | P135691nbd 1xmi 1xmj 2bbo 2bbs 2bbt 2lob 2pze 2pzf 2pzg 3gd7 4wz6 5d2d 5d3e 5d3f 5uak
        FLNA_HUMAN | P213332aav 2bp3 2brq 2j3s 2jf1 2k3t 2k7p 2k7q 2mtp 2w0p 2wfn 3cnk 3hoc 3hop 3hor 3rgh 4m9p 4p3w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3ISW)