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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN F508A NBD1 DOMAIN WITH ATP
 
Authors :  H. A. Lewis, X. Zhao, C. Wang, J. M. Sauder, I. Rooney, B. W. Noland, D. Lor M. C. Kearins, K. Conners, B. Condon, P. C. Maloney, W. B. Guggino, J. F. S. Emtage, Structural Genomix
Date :  02 Oct 04  (Deposition) - 09 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  A (2x),B (2x),C (2x),D (2x),E (2x)
Keywords :  Cftr; Nbd1 Domain; F508A; Cystic Fibrosis; Nucleotide-Binding Domain 1, Membrane Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. A. Lewis, X. Zhao, C. Wang, J. M. Sauder, I. Rooney, B. W. Noland, D. Lorimer, M. C. Kearins, K. Conners, B. Condon, P. C. Maloney, W. B. Guggino, J. F. Hunt, S. Emtage
Impact Of The Delta-F508 Mutation In First Nucleotide-Binding Domain Of Human Cystic Fibrosis Transmembrane Conductance Regulator On Domain Folding And Structure
J. Biol. Chem. V. 280 1346 2005
PubMed-ID: 15528182  |  Reference-DOI: 10.1074/JBC.M410968200

(-) Compounds

Molecule 1 - CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR
    ChainsA, B, C, D, E
    EC Number3.6.3.49
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentNUCLEOTIDE BINDING DOMAIN ONE
    GeneCFTR
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCFTR;
CAMP- DEPENDENT CHLORIDE CHANNEL

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit ABCDE
Biological Unit 1 (1x)ABCDE
Biological Unit 2 (2x)A (2x)B (2x)C (2x)D (2x)E (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ATP5Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG5Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1ATP5Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ATP-1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREATP B:1 , THR B:465 , GLN B:493 , HOH B:833 , HOH B:840BINDING SITE FOR RESIDUE MG B 6
02AC2SOFTWAREATP A:2 , THR A:465 , GLN A:493 , HOH A:821 , HOH A:828BINDING SITE FOR RESIDUE MG A 7
03AC3SOFTWAREATP C:3 , THR C:465 , GLN C:493 , HOH C:787 , HOH C:823BINDING SITE FOR RESIDUE MG C 8
04AC4SOFTWAREATP D:4 , THR D:465 , GLN D:493 , HOH D:807 , HOH D:810BINDING SITE FOR RESIDUE MG D 9
05AC5SOFTWAREATP E:5 , THR E:465 , GLN E:493 , HOH E:781 , HOH E:785BINDING SITE FOR RESIDUE MG E 10
06AC6SOFTWAREMG B:6 , TRP B:401 , VAL B:440 , THR B:460 , GLY B:461 , ALA B:462 , GLY B:463 , LYS B:464 , THR B:465 , SER B:466 , GLN B:493 , HOH B:690 , HOH B:700 , HOH B:708 , HOH B:711 , HOH B:742 , HOH B:778 , HOH B:797 , HOH B:815 , HOH B:833 , HOH B:840 , PHE E:650 , ASP E:651BINDING SITE FOR RESIDUE ATP B 1
07AC7SOFTWAREMG A:7 , TRP A:401 , VAL A:440 , THR A:460 , GLY A:461 , ALA A:462 , GLY A:463 , LYS A:464 , THR A:465 , SER A:466 , GLN A:493 , HOH A:699 , HOH A:707 , HOH A:709 , HOH A:715 , HOH A:716 , HOH A:730 , HOH A:763 , HOH A:813 , HOH A:821 , HOH A:828 , PHE D:650BINDING SITE FOR RESIDUE ATP A 2
08AC8SOFTWAREPHE B:650 , HOH B:736 , MG C:8 , TRP C:401 , VAL C:440 , THR C:460 , GLY C:461 , ALA C:462 , GLY C:463 , LYS C:464 , THR C:465 , SER C:466 , GLN C:493 , HOH C:700 , HOH C:702 , HOH C:704 , HOH C:710 , HOH C:732 , HOH C:737 , HOH C:787 , HOH C:791 , HOH C:798 , HOH C:823BINDING SITE FOR RESIDUE ATP C 3
09AC9SOFTWAREPHE C:650 , ASP C:651 , HOH C:731 , MG D:9 , TRP D:401 , VAL D:440 , THR D:460 , GLY D:461 , ALA D:462 , GLY D:463 , LYS D:464 , THR D:465 , SER D:466 , GLN D:493 , HOH D:682 , HOH D:688 , HOH D:691 , HOH D:700 , HOH D:713 , HOH D:739 , HOH D:771 , HOH D:807 , HOH D:810BINDING SITE FOR RESIDUE ATP D 4
10BC1SOFTWAREPHE A:650 , ASP A:651 , MG E:10 , TRP E:401 , VAL E:440 , THR E:460 , GLY E:461 , ALA E:462 , GLY E:463 , LYS E:464 , THR E:465 , SER E:466 , GLN E:493 , HOH E:691 , HOH E:692 , HOH E:718 , HOH E:743 , HOH E:781 , HOH E:785BINDING SITE FOR RESIDUE ATP E 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XMI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XMI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (55, 273)

Asymmetric Unit (55, 273)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_000160A455ECFTR_HUMANDisease (CF)74551128A/B/C/D/EA455E
02UniProtVAR_000161V456FCFTR_HUMANDisease (CF)397508195A/B/C/D/EV456F
03UniProtVAR_000162G458VCFTR_HUMANDisease (CF)121909009A/B/C/D/EG458V
04UniProtVAR_000163L467FCFTR_HUMANPolymorphism1800089A/B/C/D/EL467F
05UniProtVAR_000164V470MCFTR_HUMANPolymorphism213950A/B/C/D/EM470M
06UniProtVAR_000165G480CCFTR_HUMANDisease (CF)79282516A/B/C/D/EG480C
07UniProtVAR_000166S492FCFTR_HUMANDisease (CF)121909017A/B/C/D/ES492F
08UniProtVAR_000167E504QCFTR_HUMANDisease (CF)397508223A/B/C/D/EE504Q
09UniProtVAR_009901I506MCFTR_HUMANPolymorphism1800092A/B/C/D/EI506M
10UniProtVAR_000168I506VCFTR_HUMANPolymorphism1800091A/B/C/D/EI506V
11UniProtVAR_000169I507VCFTR_HUMANPolymorphism1800091A/B/C/D/EI507V
12UniProtVAR_000172F508CCFTR_HUMANPolymorphism1800093A/B/C/D/EA508C
13UniProtVAR_000173D513GCFTR_HUMANDisease (CBAVD)397508225A/B/C/D/ED513G
14UniProtVAR_000174V520FCFTR_HUMANDisease (CF)77646904A/B/C/D/EV520F
15UniProtVAR_048150K532ECFTR_HUMANPolymorphism35032490A/B/C/D/EK532E
16UniProtVAR_000175G544VCFTR_HUMANDisease (CBAVD)397508241A/C/EG544V
17UniProtVAR_000177S549ICFTR_HUMANDisease (CF)121908755A/B/C/D/ES549I
18UniProtVAR_000176S549NCFTR_HUMANDisease (CF)121908755A/B/C/D/ES549N
19UniProtVAR_000178S549RCFTR_HUMANDisease (CF)121909005A/B/C/D/ES549R
20UniProtVAR_000179G551DCFTR_HUMANDisease (CF)75527207A/B/C/D/EG551D
21UniProtVAR_000180G551SCFTR_HUMANDisease (CF)121909013A/B/C/D/EG551S
22UniProtVAR_000181R553QCFTR_HUMANDisease (CF)121909044A/B/C/D/ER553Q
23UniProtVAR_000182L558SCFTR_HUMANDisease (CF)193922504A/B/C/D/EL558S
24UniProtVAR_000183A559TCFTR_HUMANDisease (CF)75549581A/B/C/D/EA559T
25UniProtVAR_000184R560KCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560K
26UniProtVAR_000185R560SCFTR_HUMANDisease (CF)397508267A/B/C/D/ER560S
27UniProtVAR_000186R560TCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560T
28UniProtVAR_000187V562ICFTR_HUMANPolymorphism1800097A/B/C/D/EV562I
29UniProtVAR_000188V562LCFTR_HUMANDisease (CF)1800097A/B/C/D/EV562L
30UniProtVAR_000189Y563NCFTR_HUMANDisease (CF)121909006A/B/C/D/EY563N
31UniProtVAR_000190Y569CCFTR_HUMANDisease (CF)397508277A/B/C/D/EY569C
32UniProtVAR_000191Y569DCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569D
33UniProtVAR_000192Y569HCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569H
34UniProtVAR_000193L571SCFTR_HUMANDisease (CF)397508280A/B/C/D/EL571S
35UniProtVAR_000194D572NCFTR_HUMANDisease (CF)397508282A/B/C/D/ED572N
36UniProtVAR_000195P574HCFTR_HUMANDisease (CF)121908758A/B/C/D/EP574H
37UniProtVAR_000196G576ACFTR_HUMANPolymorphism1800098A/B/C/D/EG576A
38UniProtVAR_000197D579GCFTR_HUMANDisease (CF)397508288A/B/C/D/ED579G
39UniProtVAR_000198I601FCFTR_HUMANDisease (CF)397508306A/B/C/D/EI601F
40UniProtVAR_048151S605FCFTR_HUMANPolymorphism766874A/B/C/D/ES605F
41UniProtVAR_000199L610SCFTR_HUMANDisease (CF)397508311A/B/C/D/EL610S
42UniProtVAR_000200A613TCFTR_HUMANDisease (CF)201978662A/B/C/D/EA613T
43UniProtVAR_000201D614GCFTR_HUMANDisease (CF)201124247A/B/C/D/ED614G
44UniProtVAR_000202I618TCFTR_HUMANDisease (CF)139468767A/B/C/D/EI618T
45UniProtVAR_000203L619SCFTR_HUMANDisease (CF)397508313A/B/C/D/EL619S
46UniProtVAR_000204H620PCFTR_HUMANDisease (CF)397508314A/B/C/D/EH620P
47UniProtVAR_000205H620QCFTR_HUMANDisease (CF)397508315A/B/C/D/EH620Q
48UniProtVAR_000206G622DCFTR_HUMANPolymorphism121908759A/B/C/D/EG622D
49UniProtVAR_000207G628RCFTR_HUMANDisease (CF)397508316A/B/C/D/EG628R
50UniProtVAR_000208L633PCFTR_HUMANDisease (CF)397508318A/B/C/D/EL633P
51UniProtVAR_000209D648VCFTR_HUMANDisease (CF)121909033A/B/C/D/ED648V
52UniProtVAR_000210D651NCFTR_HUMANDisease (CF)780526529A/B/C/D/ED651N
53UniProtVAR_009902S654GCFTR_HUMANPolymorphism1800099A/B/C/D/ES654G
54UniProtVAR_000211T665SCFTR_HUMANDisease (CF)  ---A/B/C/D/ET665S
55UniProtVAR_000212R668CCFTR_HUMANPolymorphism1800100A/B/C/D/ER668C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (55, 273)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_000160A455ECFTR_HUMANDisease (CF)74551128A/B/C/D/EA455E
02UniProtVAR_000161V456FCFTR_HUMANDisease (CF)397508195A/B/C/D/EV456F
03UniProtVAR_000162G458VCFTR_HUMANDisease (CF)121909009A/B/C/D/EG458V
04UniProtVAR_000163L467FCFTR_HUMANPolymorphism1800089A/B/C/D/EL467F
05UniProtVAR_000164V470MCFTR_HUMANPolymorphism213950A/B/C/D/EM470M
06UniProtVAR_000165G480CCFTR_HUMANDisease (CF)79282516A/B/C/D/EG480C
07UniProtVAR_000166S492FCFTR_HUMANDisease (CF)121909017A/B/C/D/ES492F
08UniProtVAR_000167E504QCFTR_HUMANDisease (CF)397508223A/B/C/D/EE504Q
09UniProtVAR_009901I506MCFTR_HUMANPolymorphism1800092A/B/C/D/EI506M
10UniProtVAR_000168I506VCFTR_HUMANPolymorphism1800091A/B/C/D/EI506V
11UniProtVAR_000169I507VCFTR_HUMANPolymorphism1800091A/B/C/D/EI507V
12UniProtVAR_000172F508CCFTR_HUMANPolymorphism1800093A/B/C/D/EA508C
13UniProtVAR_000173D513GCFTR_HUMANDisease (CBAVD)397508225A/B/C/D/ED513G
14UniProtVAR_000174V520FCFTR_HUMANDisease (CF)77646904A/B/C/D/EV520F
15UniProtVAR_048150K532ECFTR_HUMANPolymorphism35032490A/B/C/D/EK532E
16UniProtVAR_000175G544VCFTR_HUMANDisease (CBAVD)397508241A/C/EG544V
17UniProtVAR_000177S549ICFTR_HUMANDisease (CF)121908755A/B/C/D/ES549I
18UniProtVAR_000176S549NCFTR_HUMANDisease (CF)121908755A/B/C/D/ES549N
19UniProtVAR_000178S549RCFTR_HUMANDisease (CF)121909005A/B/C/D/ES549R
20UniProtVAR_000179G551DCFTR_HUMANDisease (CF)75527207A/B/C/D/EG551D
21UniProtVAR_000180G551SCFTR_HUMANDisease (CF)121909013A/B/C/D/EG551S
22UniProtVAR_000181R553QCFTR_HUMANDisease (CF)121909044A/B/C/D/ER553Q
23UniProtVAR_000182L558SCFTR_HUMANDisease (CF)193922504A/B/C/D/EL558S
24UniProtVAR_000183A559TCFTR_HUMANDisease (CF)75549581A/B/C/D/EA559T
25UniProtVAR_000184R560KCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560K
26UniProtVAR_000185R560SCFTR_HUMANDisease (CF)397508267A/B/C/D/ER560S
27UniProtVAR_000186R560TCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560T
28UniProtVAR_000187V562ICFTR_HUMANPolymorphism1800097A/B/C/D/EV562I
29UniProtVAR_000188V562LCFTR_HUMANDisease (CF)1800097A/B/C/D/EV562L
30UniProtVAR_000189Y563NCFTR_HUMANDisease (CF)121909006A/B/C/D/EY563N
31UniProtVAR_000190Y569CCFTR_HUMANDisease (CF)397508277A/B/C/D/EY569C
32UniProtVAR_000191Y569DCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569D
33UniProtVAR_000192Y569HCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569H
34UniProtVAR_000193L571SCFTR_HUMANDisease (CF)397508280A/B/C/D/EL571S
35UniProtVAR_000194D572NCFTR_HUMANDisease (CF)397508282A/B/C/D/ED572N
36UniProtVAR_000195P574HCFTR_HUMANDisease (CF)121908758A/B/C/D/EP574H
37UniProtVAR_000196G576ACFTR_HUMANPolymorphism1800098A/B/C/D/EG576A
38UniProtVAR_000197D579GCFTR_HUMANDisease (CF)397508288A/B/C/D/ED579G
39UniProtVAR_000198I601FCFTR_HUMANDisease (CF)397508306A/B/C/D/EI601F
40UniProtVAR_048151S605FCFTR_HUMANPolymorphism766874A/B/C/D/ES605F
41UniProtVAR_000199L610SCFTR_HUMANDisease (CF)397508311A/B/C/D/EL610S
42UniProtVAR_000200A613TCFTR_HUMANDisease (CF)201978662A/B/C/D/EA613T
43UniProtVAR_000201D614GCFTR_HUMANDisease (CF)201124247A/B/C/D/ED614G
44UniProtVAR_000202I618TCFTR_HUMANDisease (CF)139468767A/B/C/D/EI618T
45UniProtVAR_000203L619SCFTR_HUMANDisease (CF)397508313A/B/C/D/EL619S
46UniProtVAR_000204H620PCFTR_HUMANDisease (CF)397508314A/B/C/D/EH620P
47UniProtVAR_000205H620QCFTR_HUMANDisease (CF)397508315A/B/C/D/EH620Q
48UniProtVAR_000206G622DCFTR_HUMANPolymorphism121908759A/B/C/D/EG622D
49UniProtVAR_000207G628RCFTR_HUMANDisease (CF)397508316A/B/C/D/EG628R
50UniProtVAR_000208L633PCFTR_HUMANDisease (CF)397508318A/B/C/D/EL633P
51UniProtVAR_000209D648VCFTR_HUMANDisease (CF)121909033A/B/C/D/ED648V
52UniProtVAR_000210D651NCFTR_HUMANDisease (CF)780526529A/B/C/D/ED651N
53UniProtVAR_009902S654GCFTR_HUMANPolymorphism1800099A/B/C/D/ES654G
54UniProtVAR_000211T665SCFTR_HUMANDisease (CF)  ---A/B/C/D/ET665S
55UniProtVAR_000212R668CCFTR_HUMANPolymorphism1800100A/B/C/D/ER668C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (55, 546)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_000160A455ECFTR_HUMANDisease (CF)74551128A/B/C/D/EA455E
02UniProtVAR_000161V456FCFTR_HUMANDisease (CF)397508195A/B/C/D/EV456F
03UniProtVAR_000162G458VCFTR_HUMANDisease (CF)121909009A/B/C/D/EG458V
04UniProtVAR_000163L467FCFTR_HUMANPolymorphism1800089A/B/C/D/EL467F
05UniProtVAR_000164V470MCFTR_HUMANPolymorphism213950A/B/C/D/EM470M
06UniProtVAR_000165G480CCFTR_HUMANDisease (CF)79282516A/B/C/D/EG480C
07UniProtVAR_000166S492FCFTR_HUMANDisease (CF)121909017A/B/C/D/ES492F
08UniProtVAR_000167E504QCFTR_HUMANDisease (CF)397508223A/B/C/D/EE504Q
09UniProtVAR_009901I506MCFTR_HUMANPolymorphism1800092A/B/C/D/EI506M
10UniProtVAR_000168I506VCFTR_HUMANPolymorphism1800091A/B/C/D/EI506V
11UniProtVAR_000169I507VCFTR_HUMANPolymorphism1800091A/B/C/D/EI507V
12UniProtVAR_000172F508CCFTR_HUMANPolymorphism1800093A/B/C/D/EA508C
13UniProtVAR_000173D513GCFTR_HUMANDisease (CBAVD)397508225A/B/C/D/ED513G
14UniProtVAR_000174V520FCFTR_HUMANDisease (CF)77646904A/B/C/D/EV520F
15UniProtVAR_048150K532ECFTR_HUMANPolymorphism35032490A/B/C/D/EK532E
16UniProtVAR_000175G544VCFTR_HUMANDisease (CBAVD)397508241A/C/EG544V
17UniProtVAR_000177S549ICFTR_HUMANDisease (CF)121908755A/B/C/D/ES549I
18UniProtVAR_000176S549NCFTR_HUMANDisease (CF)121908755A/B/C/D/ES549N
19UniProtVAR_000178S549RCFTR_HUMANDisease (CF)121909005A/B/C/D/ES549R
20UniProtVAR_000179G551DCFTR_HUMANDisease (CF)75527207A/B/C/D/EG551D
21UniProtVAR_000180G551SCFTR_HUMANDisease (CF)121909013A/B/C/D/EG551S
22UniProtVAR_000181R553QCFTR_HUMANDisease (CF)121909044A/B/C/D/ER553Q
23UniProtVAR_000182L558SCFTR_HUMANDisease (CF)193922504A/B/C/D/EL558S
24UniProtVAR_000183A559TCFTR_HUMANDisease (CF)75549581A/B/C/D/EA559T
25UniProtVAR_000184R560KCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560K
26UniProtVAR_000185R560SCFTR_HUMANDisease (CF)397508267A/B/C/D/ER560S
27UniProtVAR_000186R560TCFTR_HUMANDisease (CF)80055610A/B/C/D/ER560T
28UniProtVAR_000187V562ICFTR_HUMANPolymorphism1800097A/B/C/D/EV562I
29UniProtVAR_000188V562LCFTR_HUMANDisease (CF)1800097A/B/C/D/EV562L
30UniProtVAR_000189Y563NCFTR_HUMANDisease (CF)121909006A/B/C/D/EY563N
31UniProtVAR_000190Y569CCFTR_HUMANDisease (CF)397508277A/B/C/D/EY569C
32UniProtVAR_000191Y569DCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569D
33UniProtVAR_000192Y569HCFTR_HUMANDisease (CF)397508276A/B/C/D/EY569H
34UniProtVAR_000193L571SCFTR_HUMANDisease (CF)397508280A/B/C/D/EL571S
35UniProtVAR_000194D572NCFTR_HUMANDisease (CF)397508282A/B/C/D/ED572N
36UniProtVAR_000195P574HCFTR_HUMANDisease (CF)121908758A/B/C/D/EP574H
37UniProtVAR_000196G576ACFTR_HUMANPolymorphism1800098A/B/C/D/EG576A
38UniProtVAR_000197D579GCFTR_HUMANDisease (CF)397508288A/B/C/D/ED579G
39UniProtVAR_000198I601FCFTR_HUMANDisease (CF)397508306A/B/C/D/EI601F
40UniProtVAR_048151S605FCFTR_HUMANPolymorphism766874A/B/C/D/ES605F
41UniProtVAR_000199L610SCFTR_HUMANDisease (CF)397508311A/B/C/D/EL610S
42UniProtVAR_000200A613TCFTR_HUMANDisease (CF)201978662A/B/C/D/EA613T
43UniProtVAR_000201D614GCFTR_HUMANDisease (CF)201124247A/B/C/D/ED614G
44UniProtVAR_000202I618TCFTR_HUMANDisease (CF)139468767A/B/C/D/EI618T
45UniProtVAR_000203L619SCFTR_HUMANDisease (CF)397508313A/B/C/D/EL619S
46UniProtVAR_000204H620PCFTR_HUMANDisease (CF)397508314A/B/C/D/EH620P
47UniProtVAR_000205H620QCFTR_HUMANDisease (CF)397508315A/B/C/D/EH620Q
48UniProtVAR_000206G622DCFTR_HUMANPolymorphism121908759A/B/C/D/EG622D
49UniProtVAR_000207G628RCFTR_HUMANDisease (CF)397508316A/B/C/D/EG628R
50UniProtVAR_000208L633PCFTR_HUMANDisease (CF)397508318A/B/C/D/EL633P
51UniProtVAR_000209D648VCFTR_HUMANDisease (CF)121909033A/B/C/D/ED648V
52UniProtVAR_000210D651NCFTR_HUMANDisease (CF)780526529A/B/C/D/ED651N
53UniProtVAR_009902S654GCFTR_HUMANPolymorphism1800099A/B/C/D/ES654G
54UniProtVAR_000211T665SCFTR_HUMANDisease (CF)  ---A/B/C/D/ET665S
55UniProtVAR_000212R668CCFTR_HUMANPolymorphism1800100A/B/C/D/ER668C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 5)

Asymmetric Unit (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ABC_TRANSPORTER_1PS00211 ABC transporters family signature.CFTR_HUMAN548-562
 
 
 
 
  5A:548-562
B:548-562
C:548-562
D:548-562
E:548-562
Biological Unit 1 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ABC_TRANSPORTER_1PS00211 ABC transporters family signature.CFTR_HUMAN548-562
 
 
 
 
  5A:548-562
B:548-562
C:548-562
D:548-562
E:548-562
Biological Unit 2 (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ABC_TRANSPORTER_1PS00211 ABC transporters family signature.CFTR_HUMAN548-562
 
 
 
 
  10A:548-562
B:548-562
C:548-562
D:548-562
E:548-562

(-) Exons   (6, 30)

Asymmetric Unit (6, 30)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3aENST000000030843aENSE00001343851chr7:117120017-117120201185CFTR_HUMAN1-18180--
1.4ENST000000030844ENSE00001708957chr7:117144307-117144417111CFTR_HUMAN18-55380--
1.5ENST000000030845ENSE00001778965chr7:117149088-117149196109CFTR_HUMAN55-91370--
1.6bENST000000030846bENSE00000718611chr7:117170953-117171168216CFTR_HUMAN92-163720--
1.7ENST000000030847ENSE00000718620chr7:117174330-11717441990CFTR_HUMAN164-193300--
1.8ENST000000030848ENSE00000718626chr7:117175302-117175465164CFTR_HUMAN194-248550--
1.9ENST000000030849ENSE00000718630chr7:117176602-117176727126CFTR_HUMAN248-290430--
1.10ENST0000000308410ENSE00000718634chr7:117180154-117180400247CFTR_HUMAN290-372830--
1.11ENST0000000308411ENSE00000718637chr7:117182070-11718216293CFTR_HUMAN373-403315A:388-403
B:388-403
C:389-403
D:388-403
E:389-403
16
16
15
16
15
1.12ENST0000000308412ENSE00001738590chr7:117188695-117188877183CFTR_HUMAN404-464615A:404-464 (gaps)
B:404-464 (gaps)
C:404-464 (gaps)
D:404-464 (gaps)
E:404-464 (gaps)
61
61
61
61
61
1.13aENST0000000308413aENSE00000718648chr7:117199518-117199709192CFTR_HUMAN465-528645A:465-528
B:465-528
C:465-528
D:465-528
E:465-528
64
64
64
64
64
1.15bENST0000000308415bENSE00000718654chr7:117227793-11722788795CFTR_HUMAN529-560325A:529-560
B:529-560 (gaps)
C:529-560
D:529-560 (gaps)
E:529-560
32
32
32
32
32
1.16ENST0000000308416ENSE00000718660chr7:117230407-11723049387CFTR_HUMAN560-589305A:560-589
B:560-589
C:560-589
D:560-589
E:560-589
30
30
30
30
30
1.17ENST0000000308417ENSE00000718666chr7:117231988-117232711724CFTR_HUMAN589-8302425A:589-671
B:589-671
C:589-671
D:589-672
E:589-671
83
83
83
84
83
1.18ENST0000000308418ENSE00000718674chr7:117234984-117235112129CFTR_HUMAN831-873430--
1.19ENST0000000308419ENSE00001015963chr7:117242880-11724291738CFTR_HUMAN874-886130--
1.20ENST0000000308420ENSE00000977441chr7:117243586-117243836251CFTR_HUMAN886-970850--
1.21ENST0000000308421ENSE00000977442chr7:117246728-11724680780CFTR_HUMAN970-996270--
1.22ENST0000000308422ENSE00000718690chr7:117250573-117250723151CFTR_HUMAN997-1047510--
1.23aENST0000000308423aENSE00000977443chr7:117251635-117251862228CFTR_HUMAN1047-1123770--
1.24ENST0000000308424ENSE00000718699chr7:117254667-117254767101CFTR_HUMAN1123-1156340--
1.25aENST0000000308425aENSE00000718704chr7:117267576-117267824249CFTR_HUMAN1157-1239830--
1.26ENST0000000308426ENSE00000718708chr7:117282492-117282647156CFTR_HUMAN1240-1291520--
1.27ENST0000000308427ENSE00000718713chr7:117292896-11729298590CFTR_HUMAN1292-1321300--
1.28ENST0000000308428ENSE00000718718chr7:117304742-117304914173CFTR_HUMAN1322-1379580--
1.29ENST0000000308429ENSE00000718724chr7:117305513-117305618106CFTR_HUMAN1379-1414360--
1.30bENST0000000308430bENSE00001918100chr7:117306962-1173087151754CFTR_HUMAN1415-1480660--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:267
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:284
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667    
           CFTR_HUMAN   388 TTTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSL 671
               SCOP domains d1xmia_ A: Cystic fibros                 is transmembrane conductance regulator, CFTR, nucleotide-binding domain                                                                                                                                                                             SCOP domains
               CATH domains 1xmiA00 A:388-671 P-loop                  containing nucleotide triphosphate hydrolases                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhhhhh.-----------------...hhhhhh...eeeeeeee....eeeee.....hhhhhhhhhh....eeeeeee....eeee........eehhhhhhh....hhhhhhhhhhhh.hhhhhhh..hhhh.ee.......hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh........eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhh.hhhhhh.........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------EF-V--------F--M---------C-----------F-----------Q-MVC----G------F-----------E-----------V----I-D-Q----STK-IN-----C-SN-H-A--G---------------------F---F----S--TG---TSP-D-----R----P--------------V--N--G----------S--C--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------V------------------------------------------N-S--------S-L------D--------------------------------------------------Q--------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------R----------T--------H------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11       Exon 1.12  PDB: A:404-464 (gaps) UniProt: 404-464            Exon 1.13a  PDB: A:465-528 UniProt: 465-528                     Exon 1.15b  PDB: A:529-560      ----------------------------Exon 1.17  PDB: A:589-671 UniProt: 589-830 [INCOMPLETE]                             Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16  PDB: A:560-589     ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1xmi A 388 STTEVVMENVTAFWEEGFGELFEK-----------------SFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLRRFSL 671
                                   397       407   |     -         - |     437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667    
                                                 411               429                                                                                                                                                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:258
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:284
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667    
           CFTR_HUMAN   388 TTTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSL 671
               SCOP domains d1xmib_ B: Cystic fibrosis                transmembrane conductance regulator, CFTR, nucleotide-binding domain                                                                                                                                                                               SCOP domains
               CATH domains 1xmiB00 B:388-671 P-loop c               ontaining nucleotide triphosphate hydrolases                                                                                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhhhhhhhh---------------...hhhhhh...eeeeeeee....eeeee.....hhhhhhhhhh....eeeeeee....eeee.........hhhhhhhh....hhhhhhhhhhhh.hhhhhhh------...-----..hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh........eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------EF-V--------F--M---------C-----------F-----------Q-MVC----G------F-----------E----------------I-D-Q----STK-IN-----C-SN-H-A--G---------------------F---F----S--TG---TSP-D-----R----P--------------V--N--G----------S--C--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------V------------------------------------------N-S--------S-L------D--------------------------------------------------Q--------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------R----------T--------H------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11       Exon 1.12  PDB: B:404-464 (gaps) UniProt: 404-464            Exon 1.13a  PDB: B:465-528 UniProt: 465-528                     Exon 1.15b  PDB: B:529-560 (gaps----------------------------Exon 1.17  PDB: B:589-671 UniProt: 589-830 [INCOMPLETE]                             Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16  PDB: B:560-589     ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1xmi B 388 STTEVVMENVTAFWEEGFGELFEKAK---------------SFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISK------IVL-----TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLRRFSL 671
                                   397       407     |   -         - |     437       447       457       467       477       487       497       507       517       527    |    - | |   547       557       567       577       587       597       607       617       627       637       647       657       667    
                                                   413             429                                                                                                    532    539 |   547                                                                                                                            
                                                                                                                                                                                   541                                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:270
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:283
                                   398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668   
           CFTR_HUMAN   389 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSL 671
               SCOP domains d1xmic_ C: Cystic fibrosis              transmembrane conductance regulator, CFTR, nucleotide-binding domain                                                                                                                                                                                SCOP domains
               CATH domains 1xmiC00 C:389-671 P-loop co             ntaining nucleotide triphosphate hydrolases                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhhhhhhhhhh-------------...hhhhhh...eeeeeeee....eeeeee....hhhhhhhhhh....eeeeeee....eeee........eehhhhhhh....hhhhhhhhhhhh.hhhhhhhh.hhhh.ee.......hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh........eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------EF-V--------F--M---------C-----------F-----------Q-MVC----G------F-----------E-----------V----I-D-Q----STK-IN-----C-SN-H-A--G---------------------F---F----S--TG---TSP-D-----R----P--------------V--N--G----------S--C--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------V------------------------------------------N-S--------S-L------D--------------------------------------------------Q--------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------R----------T--------H------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11      Exon 1.12  PDB: C:404-464 (gaps) UniProt: 404-464            Exon 1.13a  PDB: C:465-528 UniProt: 465-528                     Exon 1.15b  PDB: C:529-560      ----------------------------Exon 1.17  PDB: C:589-671 UniProt: 589-830 [INCOMPLETE]                             Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16  PDB: C:560-589     ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1xmi C 389 TTEVVMENVTAFWEEGFGELFEKAKQN-------------SFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLRRFSL 671
                                   398       408      |  -         -|      438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668   
                                                    415           429                                                                                                                                                                                                                                                  

Chain D from PDB  Type:PROTEIN  Length:268
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:285
                                   397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667     
           CFTR_HUMAN   388 TTTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLE 672
               SCOP domains d1xmid_ D: Cystic fibro               sis transmembrane conductance regulator, CFTR, nucleotide-binding domain                                                                                                                                                                                SCOP domains
               CATH domains 1xmiD00 D:388-672 P-loo               p containing nucleotide triphosphate hydrolases                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...........---------------......hhhhhh...eeeeeeee....eeeee.....hhhhhhhhhh....eeeeeee....eeee........eehhhhhhh....hhhhhhhhhhhh.hhhhhhhh.hhhh.ee..--...hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh........eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------EF-V--------F--M---------C-----------F-----------Q-MVC----G------F-----------E----------------I-D-Q----STK-IN-----C-SN-H-A--G---------------------F---F----S--TG---TSP-D-----R----P--------------V--N--G----------S--C---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------V------------------------------------------N-S--------S-L------D--------------------------------------------------Q---------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------R----------T--------H------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER-------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11       Exon 1.12  PDB: D:404-464 (gaps) UniProt: 404-464            Exon 1.13a  PDB: D:465-528 UniProt: 465-528                     Exon 1.15b  PDB: D:529-560 (gaps----------------------------Exon 1.17  PDB: D:589-672 UniProt: 589-830 [INCOMPLETE]                              Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16  PDB: D:560-589     ----------------------------------------------------------------------------------- Transcript 1 (2)
                 1xmi D 388 STTEVVMENVTAFWEEGFGELFE---------------DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE--ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLRRFSLE 672
                                   397       407  |      -       427       437       447       457       467       477       487       497       507       517       527       537     | 547       557       567       577       587       597       607       617       627       637       647       657       667     
                                                410             426                                                                                                                  543  |                                                                                                                              
                                                                                                                                                                                        546                                                                                                                              

Chain E from PDB  Type:PROTEIN  Length:266
 aligned with CFTR_HUMAN | P13569 from UniProtKB/Swiss-Prot  Length:1480

    Alignment length:283
                                   398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668   
           CFTR_HUMAN   389 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSL 671
               SCOP domains d1xmie_ E: Cystic fibro                 sis transmembrane conductance regulator, CFTR, nucleotide-binding domain                                                                                                                                                                            SCOP domains
               CATH domains 1xmiE00 E:389-671 P-loo                 p containing nucleotide triphosphate hydrolases                                                                                                                                                                                                     CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------ABC_tran-1xmiE01 E:465-576                                                                                      --------------------------------------------------------------CFTR_R-1xmiE06 E:639-671          Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------ABC_tran-1xmiE02 E:465-576                                                                                      --------------------------------------------------------------CFTR_R-1xmiE07 E:639-671          Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------ABC_tran-1xmiE03 E:465-576                                                                                      --------------------------------------------------------------CFTR_R-1xmiE08 E:639-671          Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------ABC_tran-1xmiE04 E:465-576                                                                                      --------------------------------------------------------------CFTR_R-1xmiE09 E:639-671          Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------ABC_tran-1xmiE05 E:465-576                                                                                      --------------------------------------------------------------CFTR_R-1xmiE10 E:639-671          Pfam domains (5)
         Sec.struct. author ...eeeeeeee...hhhhhhhh.-----------------...hhhhhh...eeeeeeee....eeeee.....hhhhhhhhhh....eeeeeee....eeee........eehhhhhhh....hhhhhhhhhhhh.hhhhhhhh.hhhh.ee.......hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh........eeeee..hhhhhhhh.eeeeee..eeeeeehhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------------------EF-V--------F--M---------C-----------F-----------Q-MVC----G------F-----------E-----------V----I-D-Q----STK-IN-----C-SN-H-A--G---------------------F---F----S--TG---TSP-D-----R----P--------------V--N--G----------S--C--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------V------------------------------------------N-S--------S-L------D--------------------------------------------------Q--------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------R----------T--------H------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.11      Exon 1.12  PDB: E:404-464 (gaps) UniProt: 404-464            Exon 1.13a  PDB: E:465-528 UniProt: 465-528                     Exon 1.15b  PDB: E:529-560      ----------------------------Exon 1.17  PDB: E:589-671 UniProt: 589-830 [INCOMPLETE]                             Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16  PDB: E:560-589     ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1xmi E 389 TTEVVMENVTAFWEEGFGELFEK-----------------SFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRNSILTETLRRFSL 671
                                   398       408  |      -         -|      438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668   
                                                411               429                                                                                                                                                                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 10)

Asymmetric Unit
(-)
Family: CFTR_R (12)
2aCFTR_R-1xmiE06E:639-671
2bCFTR_R-1xmiE07E:639-671
2cCFTR_R-1xmiE08E:639-671
2dCFTR_R-1xmiE09E:639-671
2eCFTR_R-1xmiE10E:639-671

(-) Gene Ontology  (51, 51)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (CFTR_HUMAN | P13569)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042626    ATPase activity, coupled to transmembrane movement of substances    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
    GO:0043225    ATPase-coupled anion transmembrane transporter activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + anion(out) = ADP + phosphate + anion(in).
    GO:0030165    PDZ domain binding    Interacting selectively and non-covalently with a PDZ domain of a protein, a domain found in diverse signaling proteins.
    GO:0015106    bicarbonate transmembrane transporter activity    Enables the transfer of bicarbonate from one side of a membrane to the other. Bicarbonate is the hydrogencarbonate ion, HCO3-.
    GO:0005254    chloride channel activity    Enables the facilitated diffusion of a chloride (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
    GO:0019869    chloride channel inhibitor activity    Stops, prevents, or reduces the activity of a chloride channel.
    GO:0017081    chloride channel regulator activity    Modulates the activity of a chloride channel.
    GO:0015108    chloride transmembrane transporter activity    Enables the transfer of chloride ions from one side of a membrane to the other.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0005260    intracellular ATPase-gated chloride channel activity    Enables passage of a chloride ion through a transmembrane channel that opens when intracellular ATP is bound and hydrolysed. Passage is via passive diffusion once the channel is open.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0015701    bicarbonate transport    The directed movement of bicarbonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0071320    cellular response to cAMP    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:1902476    chloride transmembrane transport    The directed movement of chloride across a membrane.
    GO:0006821    chloride transport    The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006695    cholesterol biosynthetic process    The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0030301    cholesterol transport    The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0051454    intracellular pH elevation    Any process that increases the internal pH of a cell, measured by the concentration of the hydrogen ion.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0060081    membrane hyperpolarization    The process in which membrane potential increases with respect to its steady-state potential, usually from negative potential to a more negative potential. For example, during the repolarization phase of an action potential the membrane potential often becomes more negative or hyperpolarized before returning to the steady-state resting potential.
    GO:1902161    positive regulation of cyclic nucleotide-gated ion channel activity    Any process that activates or increases the frequency, rate or extent of cyclic nucleotide-gated ion channel activity.
    GO:0045921    positive regulation of exocytosis    Any process that activates or increases the frequency, rate or extent of exocytosis.
    GO:0035774    positive regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:1902943    positive regulation of voltage-gated chloride channel activity    Any process that activates or increases the frequency, rate or extent of voltage-gated chloride channel activity.
    GO:0007585    respiratory gaseous exchange    The process of gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms.
    GO:0048240    sperm capacitation    A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0006904    vesicle docking involved in exocytosis    The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
cellular component
    GO:0030660    Golgi-associated vesicle membrane    The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0034707    chloride channel complex    An ion channel complex through which chloride ions pass.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0031205    endoplasmic reticulum Sec complex    An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFTR_HUMAN | P135691nbd 1xmj 2bbo 2bbs 2bbt 2lob 2pze 2pzf 2pzg 3gd7 3isw 4wz6 5d2d 5d3e 5d3f 5uak

(-) Related Entries Specified in the PDB File

1q3h MOUSE CFTR NBD1 WITH AMP.PNP
1r0w APO MOUSE CFTR NBD1
1r0x MOUSE CFTR NBD1 WITH ATP
1r0y MOUSE CFTR NBD1 WITH ADP
1r0z PHOSPHORYLATED MOUSE CFTR NBD1 WITH ATP
1r10 MOUSE CFTR NBD1 WITH ATP IN I4122 SPACE GROUP
1xmj