4P3W - JenaLib

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Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE HUMAN FILAMIN A IG-LIKE DOMAINS 20-21 IN COMPLEX WITH MIGFILIN PEPTIDE

Authors :   J. Seppala, U. Pentikainen, J. Ylanne

Date :   10 Mar 14 (Deposition) - 12 Aug 15 (Release) - 12 Aug 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,G  (1x)
Biol. Unit 2: B,H  (1x)
Biol. Unit 3: E,K  (1x)
Biol. Unit 4: F,L  (1x)
Biol. Unit 5: D,J  (1x)
Biol. Unit 6: C,I  (1x)

Keywords :   Cytoskeleton, Adhesion, Immunoglobulin-Like, Actin Binding Protein, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Seppala, U. Pentikainen, J. Ylanne
Crystal Structure Of The Human Filamin A Ig-Like Domains 20-21 In Complex With Migfilin Peptide
To Be Published
PubMed: search

Molecule 1 - FILAMIN-A
	Chains	:	A, B, E, F, D, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX4T3-TEV
	Expression System Strain	:	BL21 GOLD
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	FILAMIN REPEATS 20 AND 21, RESIDUES 2152-2329
	Gene	:	FLNA, FLN, FLN1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FLN-A,ACTIN-BINDING PROTEIN 280,ABP-280,ALPHA-FILAMIN, ENDOTHELIAL ACTIN-BINDING PROTEIN,FILAMIN-1,NON-MUSCLE FILAMIN

Molecule 2 - FILAMIN-BINDING LIM PROTEIN 1
	Chains	:	G, H, K, L, J, I
	Engineered	:	YES
	Fragment	:	RESIDUES 5-28
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FBLP-1,MIGFILIN,MITOGEN-INDUCIBLE 2-INTERACTING PROTEIN, MIG2-INTERACTING PROTEIN
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A						G
Biological Unit 2 (1x)	:		B						H
Biological Unit 3 (1x)	:					E						K
Biological Unit 4 (1x)	:						F						L
Biological Unit 5 (1x)	:				D						J
Biological Unit 6 (1x)	:			C						I

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	NA	2	Ligand/Ion	SODIUM ION
2	PR	4	Ligand/Ion	PRASEODYMIUM ION
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	PR	-1	Ligand/Ion	PRASEODYMIUM ION
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:2232 , LEU A:2233 , GLY A:2234 , GLU A:2235 , GLY A:2236 , GLY A:2237 , ALA A:2238 , PHE A:2311 , ASN A:2312	binding site for residue SO4 A 2401
02	AC2	SOFTWARE	ASP A:2173 , SER B:2329 , HOH B:2503 , HOH B:2507	binding site for residue PR A 2402
03	AC3	SOFTWARE	PRO B:2232 , LEU B:2233 , GLY B:2234 , GLU B:2235 , GLY B:2236 , GLY B:2237 , ALA B:2238 , ASN B:2312	binding site for residue SO4 B 2401
04	AC4	SOFTWARE	SER A:2329 , HOH A:2520 , ASP B:2173 , HOH B:2504	binding site for residue PR B 2402
05	AC5	SOFTWARE	PRO E:2232 , LEU E:2233 , GLY E:2234 , GLU E:2235 , GLY E:2236 , GLY E:2237 , ALA E:2238 , PHE E:2311 , ASN E:2312	binding site for residue SO4 E 2401
06	AC6	SOFTWARE	ASP E:2173 , HOH E:2511 , HOH E:2516	binding site for residue NA E 2402
07	AC7	SOFTWARE	GLU E:2306 , HOH E:2503 , GLU F:2276 , GLU F:2306 , HOH F:2502	binding site for residue PR E 2403
08	AC8	SOFTWARE	GLU C:2306 , HOH C:2517 , GLU D:2276 , GLU D:2306 , HOH D:2506	binding site for residue PR D 2401
09	AC9	SOFTWARE	PRO C:2232 , LEU C:2233 , GLY C:2234 , GLU C:2235 , GLY C:2236 , GLY C:2237 , ALA C:2238 , PHE C:2311 , ASN C:2312	binding site for residue SO4 C 2401
10	AD1	SOFTWARE	ASP C:2173 , HOH C:2502 , HOH C:2511	binding site for residue NA C 2402

Asymmetric Unit

No.	Residues
1	A:2160	-	A:2199
2	B:2160	-	B:2199
3	C:2160	-	C:2199
4	D:2160	-	D:2199
5	E:2160	-	E:2199
6	F:2160	-	F:2199

Asymmetric Unit

No.	Residues
1	Ser A:2224	-	Pro A:2225
2	Gly A:2231	-	Pro A:2232
3	Gly A:2236	-	Gly A:2237
4	Ser A:2319	-	Pro A:2320
5	Ser B:2224	-	Pro B:2225
6	Gly B:2231	-	Pro B:2232
7	Ser B:2319	-	Pro B:2320
8	Ser E:2224	-	Pro E:2225
9	Gly E:2231	-	Pro E:2232
10	Ser E:2319	-	Pro E:2320
11	Ser F:2224	-	Pro F:2225
12	Gly F:2231	-	Pro F:2232
13	Ser F:2319	-	Pro F:2320
14	Ser D:2224	-	Pro D:2225
15	Gly D:2231	-	Pro D:2232
16	Ser D:2319	-	Pro D:2320
17	Ser C:2224	-	Pro C:2225
18	Gly C:2231	-	Pro C:2232
19	Ser C:2319	-	Pro C:2320

(no "SAP(SNP)/Variant" information available for 4P3W)

(no "PROSITE Motif" information available for 4P3W)

(no "Exon" information available for 4P3W)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....hhh.eeeeee.....eee.eeee....eeeee.......eeeeeeee..ee.....eeee.......hhhhheeehhhhh.ee....eeeeee......eeeeeeeee....eeeeee....eeeeeee....eeeeeeeee..ee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p3w A 2158 SHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPS 2329
                                  2167      2177      2187      2197      2207      2217      2227      2237      2247      2257      2267      2277      2287      2297      2307      2317      2327

Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhh.eeeeee.....eee.eeee....eeeee.......eeeeeeee..ee.....eeee.......hhhhheeehhhhh.ee....eeeeee......eeeeeeeee....eeeeee....eeeeeee....eeeeeeeee..ee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p3w B 2159 HCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASPS 2329
                                  2168      2178      2188      2198      2208      2218      2228      2238      2248      2258      2268      2278      2288      2298      2308      2318      2328

Chain C from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhh.eeeeee.....eee.eeee....eeeee.......eeeeeeee..ee..eeeeeee.......hhhhheeehhhhh.ee....eeeeee......eeeeeeeee...eeeeeee....eeeeeeee...eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p3w C 2157 GSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                                  2166      2176      2186      2196      2206      2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326

Chain D from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee....eeeeee.....eee....eeee........eeeeeeee..ee.....eeee......hhhhhheeehhhhh.ee....eeeeee......eeeeeeeee....eeeeee....eeeeeee....eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4p3w D 2158 SHCDLSLKIPQDMTAQVTSPSGKTHEAEIHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                                  2167|     2181      2196      2206      2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326  
                                  2167|              2190|                                                                                                                                    
                                   2172               2196

Chain E from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhh.eeeeee.....eee.eeee....eeeee.......eeeeeeee..ee..eeeeeee.......hhhhheeehhhhh.ee....eeeeee......eeeeeeeee....eeeeee....eeeeeee....eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p3w E 2157 GSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                                  2166      2176      2186      2196      2206      2216      2226      2236      2246      2256      2266      2276      2286      2296      2306      2316      2326

Chain F from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeeee.....eee....eee........eeeeeeee.......eeeeeeee.....hhhhhheeehhhhh.ee....eeeeee......eeeeeeeee....eeeeee....eeeeeee....eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4p3w F 2159 HCLSLKIMTAQVTSPSGKTHEAEIHTYCIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                             ||   2176      2186   || 2201      2211      2221      2231      2241      2251      2261      2271      2281      2291      2301      2311      2321       
                          2160|   ||            2190|                                                                                                                                    
                           2162   ||             2196                                                                                                                                    
                               2166|                                                                                                                                                     
                                2174

Chain G from PDB  Type:PROTEIN  Length:15
                                                
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                4p3w G    6 EKRVASSVFITLAPP   20
                                    15

Chain H from PDB  Type:PROTEIN  Length:15
                                                
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                4p3w H    6 EKRVASSVFITLAPP   20
                                    15

Chain I from PDB  Type:PROTEIN  Length:14
                                               
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                4p3w I    7 KRVASSVFITLAPP   20
                                    16

Chain J from PDB  Type:PROTEIN  Length:13
                                              
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                4p3w J    7 KRVASSVFITLAP   19
                                    16

Chain K from PDB  Type:PROTEIN  Length:15
                                                
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                4p3w K    6 EKRVASSVFITLAPP   20
                                    15

Chain L from PDB  Type:PROTEIN  Length:12
                                             
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                4p3w L    7 KRVASSVFITLA   18
                                    16

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4P3W)

(no "CATH Domain" information available for 4P3W)

(no "Pfam Domain" information available for 4P3W)

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Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:2231 - Pro A:2232	[ RasMol ]
		Gly A:2236 - Gly A:2237	[ RasMol ]
		Gly B:2231 - Pro B:2232	[ RasMol ]
		Gly C:2231 - Pro C:2232	[ RasMol ]
		Gly D:2231 - Pro D:2232	[ RasMol ]
		Gly E:2231 - Pro E:2232	[ RasMol ]
		Gly F:2231 - Pro F:2232	[ RasMol ]
		Ser A:2224 - Pro A:2225	[ RasMol ]
		Ser A:2319 - Pro A:2320	[ RasMol ]
		Ser B:2224 - Pro B:2225	[ RasMol ]
		Ser B:2319 - Pro B:2320	[ RasMol ]
		Ser C:2224 - Pro C:2225	[ RasMol ]
		Ser C:2319 - Pro C:2320	[ RasMol ]
		Ser D:2224 - Pro D:2225	[ RasMol ]
		Ser D:2319 - Pro D:2320	[ RasMol ]
		Ser E:2224 - Pro E:2225	[ RasMol ]
		Ser E:2319 - Pro E:2320	[ RasMol ]
		Ser F:2224 - Pro F:2225	[ RasMol ]
		Ser F:2319 - Pro F:2320	[ RasMol ]

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(no "Related Entries Specified in the PDB File" available for 4P3W)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (10, 10)

SS Bonds (6, 6)

Cis Peptide Bonds (19, 19)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (74, 81)

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