3H1U - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF UBIQUITIN IN COMPLEX WITH CD IONS

Authors :   I. A. Qureshi, F. Ferron, P. Cheung, J. Lescar

Date :   14 Apr 09 (Deposition) - 05 May 09 (Release) - 27 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cadmium Bound Ubiquitin, Isopeptide Bond, Nucleus, Phosphoprotein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. A. Qureshi, F. Ferron, C. C. Seh, P. Cheung, J. Lescar
Crystallographic Structure Of Ubiquitin In Complex With Cadmium Ions
Bmc Res Notes V. 2 251 2009
PubMed-ID: 20003470 | Reference-DOI: 10.1186/1756-0500-2-251

Molecule 1 - UBIQUITIN
	Chains	:	A, B
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 5)

No.	Name	Count	Type	Full Name
1	CD	5	Ligand/Ion	CADMIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:64 , HIS A:68 , HOH A:98	BINDING SITE FOR RESIDUE CD A 77
2	AC2	SOFTWARE	MET A:1 , GLU A:16 , ASP A:32 , HOH A:81	BINDING SITE FOR RESIDUE CD A 78
3	AC3	SOFTWARE	GLU A:18 , ASP A:21 , LYS A:29 , HOH A:80	BINDING SITE FOR RESIDUE CD A 79
4	AC4	SOFTWARE	GLU B:18 , ASP B:21 , LYS B:29 , HOH B:80	BINDING SITE FOR RESIDUE CD B 77
5	AC5	SOFTWARE	GLY A:75 , MET B:1 , GLU B:16 , ASP B:32	BINDING SITE FOR RESIDUE CD B 78

(no "SS Bond" information available for 3H1U)

(no "Cis Peptide Bond" information available for 3H1U)

(no "SAP(SNP)/Variant" information available for 3H1U)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UBIQUITIN_2	PS50053	Ubiquitin domain profile.	RS27A_BOVIN	1-76	2	A:1-75 B:1-75
				RL40_BOVIN	1-76	2	A:1-75 B:1-75
				UBB_BOVIN	1-76 77-152 153-228 229-304	2	- - - A:1-75 B:1-75
				UBC_BOVIN	1-76 77-152 153-228 229-304 305-380 381-456 457-532 533-608 609-684	2	- - - - - - - - A:1-75 B:1-75
2	UBIQUITIN_1	PS00299	Ubiquitin domain signature.	RS27A_BOVIN	27-52	2	A:27-52 B:27-52
				RL40_BOVIN	27-52	2	A:27-52 B:27-52
				UBB_BOVIN	27-52 103-128 179-204 255-280	2	- - - A:27-52 B:27-52
				UBC_BOVIN	27-52 103-128 179-204 255-280 331-356 407-432 483-508 559-584 635-660	2	- - - - - - - - A:27-52 B:27-52

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UBIQUITIN_2	PS50053	Ubiquitin domain profile.	RS27A_BOVIN	1-76	1	A:1-75 -
				RL40_BOVIN	1-76	1	A:1-75 -
				UBB_BOVIN	1-76 77-152 153-228 229-304	1	- - - A:1-75 -
				UBC_BOVIN	1-76 77-152 153-228 229-304 305-380 381-456 457-532 533-608 609-684	1	- - - - - - - - A:1-75 -
2	UBIQUITIN_1	PS00299	Ubiquitin domain signature.	RS27A_BOVIN	27-52	1	A:27-52 -
				RL40_BOVIN	27-52	1	A:27-52 -
				UBB_BOVIN	27-52 103-128 179-204 255-280	1	- - - A:27-52 -
				UBC_BOVIN	27-52 103-128 179-204 255-280 331-356 407-432 483-508 559-584 635-660	1	- - - - - - - - A:27-52 -

Biological Unit 2 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UBIQUITIN_2	PS50053	Ubiquitin domain profile.	RS27A_BOVIN	1-76	1	- B:1-75
				RL40_BOVIN	1-76	1	- B:1-75
				UBB_BOVIN	1-76 77-152 153-228 229-304	1	- - - - B:1-75
				UBC_BOVIN	1-76 77-152 153-228 229-304 305-380 381-456 457-532 533-608 609-684	1	- - - - - - - - - B:1-75
2	UBIQUITIN_1	PS00299	Ubiquitin domain signature.	RS27A_BOVIN	27-52	1	- B:27-52
				RL40_BOVIN	27-52	1	- B:27-52
				UBB_BOVIN	27-52 103-128 179-204 255-280	1	- - - - B:27-52
				UBC_BOVIN	27-52 103-128 179-204 255-280 331-356 407-432 483-508 559-584 635-660	1	- - - - - - - - - B:27-52

(no "Exon" information available for 3H1U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:75
                                    10        20        30        40        50        60        70     
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d3h1ua_ A: automated matches                                                SCOP domains
               CATH domains 3h1uA00 A:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) UBIQUITIN_2  PDB: A:1-75 UniProt: 1-76                                      PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: A:27-52 ----------------------- PROSITE (7)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:75
                                    10        20        30        40        50        60        70     
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d3h1ua_ A: automated matches                                                SCOP domains
               CATH domains 3h1uA00 A:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-75 UniProt: 1-76                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) --------------------------UBIQUITIN_1  PDB: A:27-52 ----------------------- PROSITE (8)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:75
                                   238       248       258       268       278       288       298     
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
               SCOP domains d3h1ua_ A: automated matches                                                SCOP domains
               CATH domains 3h1uA00 A:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: A:1-75 UniProt: 229-304                                   PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: A:27-52 ----------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:75
                                   618       628       638       648       658       668       678     
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 683
               SCOP domains d3h1ua_ A: automated matches                                                SCOP domains
               CATH domains 3h1uA00 A:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee................eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: A:27-52 ----------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-75 UniProt: 609-684                                   PROSITE (1)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:75
                                    10        20        30        40        50        60        70     
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d3h1ub_ B: automated matches                                                SCOP domains
               CATH domains 3h1uB00 B:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..eee...............eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) UBIQUITIN_2  PDB: B:1-75 UniProt: 1-76                                      PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: B:27-52 ----------------------- PROSITE (7)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:75
                                    10        20        30        40        50        60        70     
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d3h1ub_ B: automated matches                                                SCOP domains
               CATH domains 3h1uB00 B:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..eee...............eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: B:1-75 UniProt: 1-76                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) --------------------------UBIQUITIN_1  PDB: B:27-52 ----------------------- PROSITE (8)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:75
                                   238       248       258       268       278       288       298     
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
               SCOP domains d3h1ub_ B: automated matches                                                SCOP domains
               CATH domains 3h1uB00 B:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..eee...............eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: B:1-75 UniProt: 229-304                                   PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: B:27-52 ----------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:75
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:75
                                   618       628       638       648       658       668       678     
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 683
               SCOP domains d3h1ub_ B: automated matches                                                SCOP domains
               CATH domains 3h1uB00 B:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..eee...............eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: B:27-52 ----------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) UBIQUITIN_2  PDB: B:1-75 UniProt: 609-684                                   PROSITE (1)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------- PROSITE (6)
                 Transcript --------------------------------------------------------------------------- Transcript
                 3h1u B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: beta-Grasp (ubiquitin-like) (1032)

Superfamily: Ubiquitin-like (546)

Family: Ubiquitin-related (337)

Protein domain: automated matches (80)

Cow (Bos taurus) [TaxId: 9913] (4)

1a	d3h1ua_	A:
1b	d3h1ub_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 (286)

Bovine (Bos taurus) (3)

1a	3h1uA00	A:1-75
1b	3h1uB00	B:1-75

(no "Pfam Domain" information available for 3H1U)

Asymmetric Unit(hide GO term definitions)

Chain A,B (UBB_BOVIN | P0CG53)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B (UBC_BOVIN | P0CH28)

cellular component
	GO:0005737		cytoplasm		All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634		nucleus		A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,B (RL40_BOVIN | P63048)

molecular function
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain A,B (RS27A_BOVIN | P62992)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3h1u)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	3h1u
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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	RL40_BOVIN \| P63048
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	RS27A_BOVIN \| P62992
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	UBB_BOVIN \| P0CG53
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	UBC_BOVIN \| P0CH28
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	RL40_BOVIN \| P63048
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RS27A_BOVIN \| P62992
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	UBB_BOVIN \| P0CG53
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	UBC_BOVIN \| P0CH28
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (10, 21)

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File