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(-) Description

Title :  CRYSTAL STRUCTURE OF IBV PAPAIN-LIKE PROTEASE PLPRO C101S MUTANT IN COMPLEX WITH UBIQUITIN
 
Authors :  L. Y. Kong, L. M. Yan, Y. Zhang, Z. H. Rao
Date :  11 Jun 15  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ibv, Papain-Like Protease, Ubiquitin, Dub, Hydrolase-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Y. Kong, L. M. Yan, Y. Zhang, Z. H. Rao
Crystal Structure Of Ibv Papain-Like Protease Plpro C101S Mutant In Complex With Ubiquitin
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REPLICASE POLYPROTEIN 1AB
    Chains: A
    EC Number: 3.4.22.-, 2.7.7.48, 3.6.4.12, 3.6.4.13, 3.1.13.-, 3.1.-.-, 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1174-1483
    Gene: REP, 1A-1B
    Mutation: YES
    Organism Common: IBV
    Organism Scientific: AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE)
    Organism Taxid: 11122
    Other Details: THE FIRST THREE RESIDUES ARE TAG. THE 56 RESIDUES BESIDES TAG AT THE VERY BEGINNING ARE MISSING IN THE STRUCTURE BECAUSE OF DEGRADATION DURING CRYSTALLIZATION.
    Strain: BEAUDETTE
    Synonym: PP1AB,ORF1AB POLYPROTEIN
 
Molecule 2 - UBIQUITIN-40S RIBOSOMAL PROTEIN S27A
    Chains: B
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: UBIQUITIN FROM BOVINE ERYTHROCYTES
    Synonym: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
2ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:180 , CYS A:182 , CYS A:214 , CYS A:217binding site for residue ZN A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BZ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BZ0)

(-) Exons   (0, 0)

(no "Exon" information available for 5BZ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhhhhhhh.....eeee..eeee.....hhhhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhh.........eeeeeeee..eeeeeeeehhhhheeee...hhhhhheeeee......eeeeeeeeeeeeeeeeee....eeee......eeeeee......eeeeee..eee...........eeeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bz0 A  57 TDKSILEYYGLDAQKYVIYLQTLAQKWNVQYRDNFLILEWRDGNSWISSAIVLLQAAKIRFKGFLTEAWAKLLGGDPTDFVAWCYASCTAKVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCNCGIKSYELRGLEACIQPVRATNLLHFKTQYSNCPTCGANNTDEVIEASLPYLLLFATDGPATVDCDEDAVGTVVFVGSTNSGHCYTQAAGQAFDNLAKDRKFGKKSPYITAmYTRFAFKNETS 304
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286      |296        
                                                                                                                                                                                                                                                                      293-MSE       


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 5bz0 B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BZ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BZ0)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (43, 44)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        R1AB_IBVB | P0C6Y1: 3ejf 3eke 4x2z
        RS27A_BOVIN | P62992: 1aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 3h1u 3m3j 4m0w 4y1h 4z9s 5fer 5jqs 5mn9

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