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(-) Description

Title :  HUMAN RABEX-5 RESIDUES 1-74 IN COMPLEX WITH UBIQUITIN
 
Authors :  L. Penengo, M. Mapelli, A. G. Murachelli, S. Confalioneri, L. Magri, A. Musacchio, P. P. Di Fiore, S. Polo, T. R. Schneider
Date :  25 Nov 05  (Deposition) - 15 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Protein-Binding, Ubiquitin Binding Domain, Endocytosis, Nuclear Protein, Polyprotein, Ubiquitin Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Penengo, M. Mapelli, A. G. Murachelli, S. Confalonieri, L. Magri, A. Musacchio, P. P. Di Fiore, S. Polo, T. R. Schneider
Crystal Structure Of The Ubiquitin Binding Domains Of Rabex-5 Reveals Two Modes Of Interaction With Ubiquitin.
Cell(Cambridge, Mass. ) V. 124 1183 2006
PubMed-ID: 16499958  |  Reference-DOI: 10.1016/J.CELL.2006.02.020

(-) Compounds

Molecule 1 - RAB GUANINE NUCLEOTIDE EXCHANGE FACTOR 1
    Chains: A, C, E, G, I, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TWO UBIQUTIN BINDING DOMAINS, RESIDUES 1-74
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RABEX-5, GEF 1
 
Molecule 2 - UBIQUITIN
    Chains: B, D, F, H, J, L
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: BOSTON BIOCHEM
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1ZN6Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:19 , CYS A:23 , CYS A:35 , CYS A:38BINDING SITE FOR RESIDUE ZN A 499
2AC2SOFTWARECYS C:19 , CYS C:23 , CYS C:35 , CYS C:38BINDING SITE FOR RESIDUE ZN C 499
3AC3SOFTWARECYS E:19 , CYS E:23 , CYS E:35 , CYS E:38BINDING SITE FOR RESIDUE ZN E 499
4AC4SOFTWARECYS G:19 , CYS G:23 , CYS G:35 , CYS G:38BINDING SITE FOR RESIDUE ZN G 499
5AC5SOFTWARECYS I:19 , CYS I:23 , CYS I:35 , CYS I:38BINDING SITE FOR RESIDUE ZN I 499
6AC6SOFTWARECYS K:19 , CYS K:23 , CYS K:35 , CYS K:38BINDING SITE FOR RESIDUE ZN K 499

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2C7N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2C7N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2C7N)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  6B:1-74
D:1-74
F:1-74
H:1-73
J:1-72
L:1-74
RL40_BOVIN1-76
 
 
 
 
 		  6B:1-74
D:1-74
F:1-74
H:1-73
J:1-72
L:1-74
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  6-
-
-
B:1-74
D:1-74
F:1-74
H:1-73
J:1-72
L:1-74
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  6-
-
-
-
-
-
-
-
B:1-74
D:1-74
F:1-74
H:1-73
J:1-72
L:1-74
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  6B:27-52
D:27-52
F:27-52
H:27-52
J:27-52
L:27-52
RL40_BOVIN27-52
 
 
 
 
 		  6B:27-52
D:27-52
F:27-52
H:27-52
J:27-52
L:27-52
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  6-
-
-
B:27-52
D:27-52
F:27-52
H:27-52
J:27-52
L:27-52
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  6-
-
-
-
-
-
-
-
B:27-52
D:27-52
F:27-52
H:27-52
J:27-52
L:27-52
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1B:1-74
-
-
-
-
-
RL40_BOVIN1-76
 
 
 
 
 		  1B:1-74
-
-
-
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
B:1-74
-
-
-
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
B:1-74
-
-
-
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1B:27-52
-
-
-
-
-
RL40_BOVIN27-52
 
 
 
 
 		  1B:27-52
-
-
-
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
B:27-52
-
-
-
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
B:27-52
-
-
-
-
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1-
D:1-74
-
-
-
-
RL40_BOVIN1-76
 
 
 
 
 		  1-
D:1-74
-
-
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
-
D:1-74
-
-
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
D:1-74
-
-
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1-
D:27-52
-
-
-
-
RL40_BOVIN27-52
 
 
 
 
 		  1-
D:27-52
-
-
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
-
D:27-52
-
-
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
D:27-52
-
-
-
-
Biological Unit 3 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1-
-
F:1-74
-
-
-
RL40_BOVIN1-76
 
 
 
 
 		  1-
-
F:1-74
-
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
-
-
F:1-74
-
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
F:1-74
-
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1-
-
F:27-52
-
-
-
RL40_BOVIN27-52
 
 
 
 
 		  1-
-
F:27-52
-
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
-
-
F:27-52
-
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
F:27-52
-
-
-
Biological Unit 4 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1-
-
-
H:1-73
-
-
RL40_BOVIN1-76
 
 
 
 
 		  1-
-
-
H:1-73
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
-
-
-
H:1-73
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
H:1-73
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1-
-
-
H:27-52
-
-
RL40_BOVIN27-52
 
 
 
 
 		  1-
-
-
H:27-52
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
-
-
-
H:27-52
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
H:27-52
-
-
Biological Unit 5 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1-
-
-
-
J:1-72
-
RL40_BOVIN1-76
 
 
 
 
 		  1-
-
-
-
J:1-72
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
-
-
-
-
J:1-72
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
-
J:1-72
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1-
-
-
-
J:27-52
-
RL40_BOVIN27-52
 
 
 
 
 		  1-
-
-
-
J:27-52
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
-
-
-
-
J:27-52
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
-
J:27-52
-
Biological Unit 6 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
 
 		  1-
-
-
-
-
L:1-74
RL40_BOVIN1-76
 
 
 
 
 		  1-
-
-
-
-
L:1-74
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
 
 
 		  1-
-
-
-
-
-
-
-
L:1-74
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
-
-
L:1-74
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
 
 		  1-
-
-
-
-
L:27-52
RL40_BOVIN27-52
 
 
 
 
 		  1-
-
-
-
-
L:27-52
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
 
 
 		  1-
-
-
-
-
-
-
-
L:27-52
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
 
 		  1-
-
-
-
-
-
-
-
-
-
-
-
-
L:27-52

(-) Exons   (0, 0)

(no "Exon" information available for 2C7N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:56
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:96
                                   165       175       185       195       205       215       225       235       245      
          RABX5_HUMAN   156 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREEEEAFASSQ 251
               SCOP domains d2c7na1 A:18-73                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 2c7n A  18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREEEEAFASSQ  73
                                    27        37        47        57  |      -         -         -         -   |    67      
                                                                     60                                       61            


Chain B from PDB  Type:PROTEIN  Length:74
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:74
                                    10        20        30        40        50        60        70    
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nb1 B:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nB00 B:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: B:1-74 UniProt: 1-76                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: B:27-52 ---------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain B from PDB  Type:PROTEIN  Length:74
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:74
                                    10        20        30        40        50        60        70    
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nb1 B:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nB00 B:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: B:1-74 UniProt: 1-76                                     PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: B:27-52 ---------------------- PROSITE (7)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain B from PDB  Type:PROTEIN  Length:74
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:74
                                   238       248       258       268       278       288       298    
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302
               SCOP domains d2c7nb1 B:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nB00 B:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: B:27-52 ---------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: B:1-74 UniProt: 229-304                                  PROSITE (1)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain B from PDB  Type:PROTEIN  Length:74
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:74
                                   618       628       638       648       658       668       678    
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682
               SCOP domains d2c7nb1 B:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nB00 B:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: B:1-74 UniProt: 609-684                                  PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: B:27-52 ---------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n B   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain C from PDB  Type:PROTEIN  Length:57
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:97
                                   164       174       184       194       204       214       224       234       244       
          RABX5_HUMAN   155 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREEEEAFASSQ 251
               SCOP domains d2c7nc1 C:17-73                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 2c7n C  17 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREEEEAFASSQ  73
                                    26        36        46        56   |     -         -         -         -    |   66       
                                                                      60                                       61            


Chain D from PDB  Type:PROTEIN  Length:74
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:74
                                    10        20        30        40        50        60        70    
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nd1 D:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nD00 D:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: D:1-74 UniProt: 1-76                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: D:27-52 ---------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n D   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain D from PDB  Type:PROTEIN  Length:74
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:74
                                    10        20        30        40        50        60        70    
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nd1 D:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nD00 D:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: D:1-74 UniProt: 1-76                                     PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: D:27-52 ---------------------- PROSITE (7)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n D   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain D from PDB  Type:PROTEIN  Length:74
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:74
                                   238       248       258       268       278       288       298    
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302
               SCOP domains d2c7nd1 D:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nD00 D:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: D:27-52 ---------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: D:1-74 UniProt: 229-304                                  PROSITE (1)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n D   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain D from PDB  Type:PROTEIN  Length:74
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:74
                                   618       628       638       648       658       668       678    
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682
               SCOP domains d2c7nd1 D:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nD00 D:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: D:1-74 UniProt: 609-684                                  PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: D:27-52 ---------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n D   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain E from PDB  Type:PROTEIN  Length:49
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:89
                                   164       174       184       194       204       214       224       234         
          RABX5_HUMAN   155 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREE 243
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2c7n E  17 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREE  65
                                    26        36        46        56   |     -         -         -         -    |    
                                                                      60                                       61    


Chain F from PDB  Type:PROTEIN  Length:74
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:74
                                    10        20        30        40        50        60        70    
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nf1 F:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nF00 F:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: F:1-74 UniProt: 1-76                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: F:27-52 ---------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n F   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain F from PDB  Type:PROTEIN  Length:74
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:74
                                    10        20        30        40        50        60        70    
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nf1 F:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nF00 F:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: F:1-74 UniProt: 1-76                                     PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: F:27-52 ---------------------- PROSITE (7)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n F   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain F from PDB  Type:PROTEIN  Length:74
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:74
                                   238       248       258       268       278       288       298    
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302
               SCOP domains d2c7nf1 F:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nF00 F:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: F:27-52 ---------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: F:1-74 UniProt: 229-304                                  PROSITE (1)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n F   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain F from PDB  Type:PROTEIN  Length:74
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:74
                                   618       628       638       648       658       668       678    
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682
               SCOP domains d2c7nf1 F:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nF00 F:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: F:1-74 UniProt: 609-684                                  PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: F:27-52 ---------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n F   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain G from PDB  Type:PROTEIN  Length:55
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:95
                                   164       174       184       194       204       214       224       234       244     
          RABX5_HUMAN   155 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREEEEAFAS 249
               SCOP domains d2c7ng1 G:17-71                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 2c7n G  17 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREEEEAFAS  71
                                    26        36        46        56   |     -         -         -         -    |   66     
                                                                      60                                       61          


Chain H from PDB  Type:PROTEIN  Length:73
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:73
                                    10        20        30        40        50        60        70   
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
               SCOP domains d2c7nh1 H:1-73 Ubiquitin                                                  SCOP domains
               CATH domains 2c7nH00 H:1-73                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: H:1-73 UniProt: 1-76                                    PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: H:27-52 --------------------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------- Transcript
                 2c7n H   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
                                    10        20        30        40        50        60        70   


Chain H from PDB  Type:PROTEIN  Length:73
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:73
                                    10        20        30        40        50        60        70   
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
               SCOP domains d2c7nh1 H:1-73 Ubiquitin                                                  SCOP domains
               CATH domains 2c7nH00 H:1-73                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: H:1-73 UniProt: 1-76                                    PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: H:27-52 --------------------- PROSITE (7)
                 Transcript ------------------------------------------------------------------------- Transcript
                 2c7n H   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
                                    10        20        30        40        50        60        70   


Chain H from PDB  Type:PROTEIN  Length:73
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:73
                                   238       248       258       268       278       288       298   
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 301
               SCOP domains d2c7nh1 H:1-73 Ubiquitin                                                  SCOP domains
               CATH domains 2c7nH00 H:1-73                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: H:27-52 --------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: H:1-73 UniProt: 229-304                                 PROSITE (1)
                PROSITE (5) ------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------- Transcript
                 2c7n H   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
                                    10        20        30        40        50        60        70   


Chain H from PDB  Type:PROTEIN  Length:73
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:73
                                   618       628       638       648       658       668       678   
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 681
               SCOP domains d2c7nh1 H:1-73 Ubiquitin                                                  SCOP domains
               CATH domains 2c7nH00 H:1-73                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhh..hhh.eeeee..ee......hhhhh.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: H:1-73 UniProt: 609-684                                 PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: H:27-52 --------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------- Transcript
                 2c7n H   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  73
                                    10        20        30        40        50        60        70   


Chain I from PDB  Type:PROTEIN  Length:58
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:98
                                   164       174       184       194       204       214       224       234       244        
          RABX5_HUMAN   155 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREEEEAFASSQS 252
               SCOP domains d2c7ni1 I:17-74                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2c7n I  17 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREEEEAFASSQS  74
                                    26        36        46        56   |     -         -         -         -    |   66        
                                                                      60                                       61             


Chain J from PDB  Type:PROTEIN  Length:72
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:72
                                    10        20        30        40        50        60        70  
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2c7nj1 J:1-72 Ubiquitin                                                 SCOP domains
               CATH domains 2c7nJ00 J:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: J:1-72 UniProt: 1-76                                   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: J:27-52 -------------------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2c7n J   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  


Chain J from PDB  Type:PROTEIN  Length:72
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:72
                                    10        20        30        40        50        60        70  
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2c7nj1 J:1-72 Ubiquitin                                                 SCOP domains
               CATH domains 2c7nJ00 J:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: J:1-72 UniProt: 1-76                                   PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------ PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: J:27-52 -------------------- PROSITE (7)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2c7n J   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  


Chain J from PDB  Type:PROTEIN  Length:72
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:72
                                   238       248       258       268       278       288       298  
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
               SCOP domains d2c7nj1 J:1-72 Ubiquitin                                                 SCOP domains
               CATH domains 2c7nJ00 J:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: J:27-52 -------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: J:1-72 UniProt: 229-304                                PROSITE (1)
                PROSITE (5) ------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------ PROSITE (6)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2c7n J   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  


Chain J from PDB  Type:PROTEIN  Length:72
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:72
                                   618       628       638       648       658       668       678  
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680
               SCOP domains d2c7nj1 J:1-72 Ubiquitin                                                 SCOP domains
               CATH domains 2c7nJ00 J:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee......hhhhh.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: J:1-72 UniProt: 609-684                                PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: J:27-52 -------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2c7n J   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  


Chain K from PDB  Type:PROTEIN  Length:49
 aligned with RABX5_HUMAN | Q9UJ41 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:89
                                   164       174       184       194       204       214       224       234         
          RABX5_HUMAN   155 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERVLLCCPGWSAMVQFQLTATSASWAQVILLLQPPKWLGLQKLQREE 243
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhhhhh----------------------------------------hhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 2c7n K  17 LLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER----------------------------------------LQREE  65
                                    26        36        46        56   |     -         -         -         -    |    
                                                                      60                                       61    


Chain L from PDB  Type:PROTEIN  Length:74
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:74
                                    10        20        30        40        50        60        70    
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nl1 L:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nL00 L:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: L:1-74 UniProt: 1-76                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: L:27-52 ---------------------- PROSITE (5)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n L   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain L from PDB  Type:PROTEIN  Length:74
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:74
                                    10        20        30        40        50        60        70    
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
               SCOP domains d2c7nl1 L:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nL00 L:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: L:1-74 UniProt: 1-76                                     PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------UBIQUITIN_1  PDB: L:27-52 ---------------------- PROSITE (7)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n L   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain L from PDB  Type:PROTEIN  Length:74
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:74
                                   238       248       258       268       278       288       298    
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302
               SCOP domains d2c7nl1 L:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nL00 L:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: L:27-52 ---------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                PROSITE (1) UBIQUITIN_2  PDB: L:1-74 UniProt: 229-304                                  PROSITE (1)
                PROSITE (5) -------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) -------------------------------------------------------------------------- PROSITE (6)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n L   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70    


Chain L from PDB  Type:PROTEIN  Length:74
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:74
                                   618       628       638       648       658       668       678    
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682
               SCOP domains d2c7nl1 L:1-74 Ubiquitin                                                   SCOP domains
               CATH domains 2c7nL00 L:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: L:1-74 UniProt: 609-684                                  PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: L:27-52 ---------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -------------------------------------------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------- Transcript
                 2c7n L   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  74
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 10)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2C7N)

(-) Gene Ontology  (35, 49)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (RABX5_HUMAN | Q9UJ41)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0017137    Rab GTPase binding    Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
    GO:0017112    Rab guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rab family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0061630    ubiquitin protein ligase activity    Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:1900235    negative regulation of Kit signaling pathway    Any process that stops, prevents or reduces the frequency, rate or extent of Kit signaling pathway.
    GO:0046580    negative regulation of Ras protein signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of Ras protein signal transduction.
    GO:0050728    negative regulation of inflammatory response    Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response.
    GO:1900165    negative regulation of interleukin-6 secretion    Any process that stops, prevents or reduces the frequency, rate or extent of interleukin-6 secretion.
    GO:0002686    negative regulation of leukocyte migration    Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte migration.
    GO:0033004    negative regulation of mast cell activation    Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation.
    GO:0043305    negative regulation of mast cell degranulation    Any process that stops, prevents, or reduces the rate of mast cell degranulation.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0048261    negative regulation of receptor-mediated endocytosis    Any process that stops, prevents, or reduces the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0006612    protein targeting to membrane    The process of directing proteins towards a membrane, usually using signals contained within the protein.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0060368    regulation of Fc receptor mediated stimulatory signaling pathway    Any process that modulates the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway. The Fc receptor mediated stimulatory signaling pathway is a series of molecular signals generated as a consequence of a the binding of the Fc portion of an immunoglobulin by an Fc receptor capable of activating or perpetuating an immune response. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
    GO:0031982    vesicle    Any small, fluid-filled, spherical organelle enclosed by membrane.

Chain B,D,F,H,J,L   (UBB_BOVIN | P0CG53)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F,H,J,L   (RL40_BOVIN | P63048)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain B,D,F,H,J,L   (UBC_BOVIN | P0CH28)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D,F,H,J,L   (RS27A_BOVIN | P62992)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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  2c7n
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RABX5_HUMAN | Q9UJ41: 1txu 2c7m 2ot3 4n3x 4n3y 4n3z 4q9u
        RL40_BOVIN | P63048: 1aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 3h1u 3m3j 4ljo 4ljp 4s22
        RS27A_BOVIN | P62992: 1aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 3h1u 3m3j 4m0w 4y1h 4z9s 5bz0 5fer 5jqs 5mn9
        UBB_BOVIN | P0CG53: 1aar 1cmx 1e0q 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 2xbb 3h1u 3m3j 4bbn
        UBC_BOVIN | P0CH28: 1aar 1cmx 1e0q 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 2xbb 2zcc 3h1u 3m3j 4bbn 4xkh 4xyz 5ait

(-) Related Entries Specified in the PDB File

1aar DI-UBIQUITIN
1e0q MUTANT PEPTIDE FROM THE FIRST N-TERMINAL 17 AMINO-ACID OF UBIQUITIN
1p3q MECHANISM OF UBIQUITIN RECOGNITION BY THE CUE DOMAIN OF VPS9
1uzx A COMPLEX OF THE VPS23 UEV WITH UBIQUITIN
1v80 SOLUTION STRUCTURES OF UBIQUITIN AT 30 BAR AND 3 KBAR
1v81 SOLUTION STRUCTURES OF UBIQUITIN AT 30 BAR AND 3 KBAR
1wr6 CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
1wrd CRYSTAL STRUCTURE OF TOM1 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
1yd8 COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN
2bgf NMR STRUCTURE OF LYS48-LINKED DI-UBIQUITIN USING CHEMICAL SHIFT PERTURBATION DATA TOGETHER WITH RDCS AND 15N-RELAXATION DATA
2c7m COMPLEX OF HUMAN RABEX-5 RESIDUES 1-74 IN COMPLEX WITH UBIQUITIN