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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UBA DOMAIN FROM EDD UBIQUITIN LIGASE IN COMPLEX WITH UBIQUITIN
 
Authors :  G. Kozlov, K. Gehring
Date :  02 Jul 07  (Deposition) - 25 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Protein-Protein Complex, Protein Binding/Ligase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Kozlov, L. Nguyen, T. Lin, G. De Crescenzo, M. Park, K. Gehring
Structural Basis Of Ubiquitin Recognition By The Ubiquitin-Associated (Uba) Domain Of The Ubiquitin Ligase Edd.
J. Biol. Chem. V. 282 35787 2007
PubMed-ID: 17897937  |  Reference-DOI: 10.1074/JBC.M705655200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UBIQUITIN
    ChainsA, C, E, G
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
 
Molecule 2 - E3 UBIQUITIN-PROTEIN LIGASE EDD1
    ChainsB, D, F, H
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPGEX-4T-1
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentRESIDUES 180-230
    GeneEDD1, EDD, HYD, KIAA0896
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHYPERPLASTIC DISCS PROTEIN HOMOLOG, HHYD, PROGESTIN-INDUCED PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2QHO)

(-) Sites  (0, 0)

(no "Site" information available for 2QHO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QHO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QHO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QHO)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
  4A:1-72
C:1-76
E:1-75
G:1-72
RL40_BOVIN1-76
 
 
 
  4A:1-72
C:1-76
E:1-75
G:1-72
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
  4-
-
C:1-76
A:1-72
E:1-75
G:1-72
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
  4-
-
-
-
-
-
-
-
A:1-72
C:1-76
E:1-75
G:1-72
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
  4A:27-52
C:27-52
E:27-52
G:27-52
RL40_BOVIN27-52
 
 
 
  4A:27-52
C:27-52
E:27-52
G:27-52
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
  4-
-
C:27-52
A:27-52
E:27-52
G:27-52
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
  4-
-
-
-
-
-
-
-
A:27-52
C:27-52
E:27-52
G:27-52
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
  1A:1-72
-
-
-
RL40_BOVIN1-76
 
 
 
  1A:1-72
-
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
  1-
-
-
A:1-72
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
  1-
-
-
-
-
-
-
-
A:1-72
-
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
  1A:27-52
-
-
-
RL40_BOVIN27-52
 
 
 
  1A:27-52
-
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
  1-
-
-
A:27-52
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
  1-
-
-
-
-
-
-
-
A:27-52
-
-
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
  1-
C:1-76
-
-
RL40_BOVIN1-76
 
 
 
  1-
C:1-76
-
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
  1-
-
C:1-76
-
-
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
  1-
-
-
-
-
-
-
-
-
C:1-76
-
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
  1-
C:27-52
-
-
RL40_BOVIN27-52
 
 
 
  1-
C:27-52
-
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
  1-
-
C:27-52
-
-
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
  1-
-
-
-
-
-
-
-
-
C:27-52
-
-
Biological Unit 3 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
  1-
-
E:1-75
-
RL40_BOVIN1-76
 
 
 
  1-
-
E:1-75
-
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
  1-
-
-
-
E:1-75
-
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
  1-
-
-
-
-
-
-
-
-
-
E:1-75
-
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
  1-
-
E:27-52
-
RL40_BOVIN27-52
 
 
 
  1-
-
E:27-52
-
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
  1-
-
-
-
E:27-52
-
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
  1-
-
-
-
-
-
-
-
-
-
E:27-52
-
Biological Unit 4 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.RS27A_BOVIN1-76
 
 
 
  1-
-
-
G:1-72
RL40_BOVIN1-76
 
 
 
  1-
-
-
G:1-72
UBB_BOVIN1-76
77-152
153-228
229-304
 
 
  1-
-
-
-
-
G:1-72
UBC_BOVIN1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
 
 
 
  1-
-
-
-
-
-
-
-
-
-
-
G:1-72
2UBIQUITIN_1PS00299 Ubiquitin domain signature.RS27A_BOVIN27-52
 
 
 
  1-
-
-
G:27-52
RL40_BOVIN27-52
 
 
 
  1-
-
-
G:27-52
UBB_BOVIN27-52
103-128
179-204
255-280
 
 
  1-
-
-
-
-
G:27-52
UBC_BOVIN27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
 
 
 
  1-
-
-
-
-
-
-
-
-
-
-
G:27-52

(-) Exons   (0, 0)

(no "Exon" information available for 2QHO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:72
                                    10        20        30        40        50        60        70  
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2qhoa_ A: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoA00 A:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-72 UniProt: 1-76                                   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: A:27-52 -------------------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain A from PDB  Type:PROTEIN  Length:72
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:72
                                    10        20        30        40        50        60        70  
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2qhoa_ A: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoA00 A:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: A:1-72 UniProt: 1-76                                   PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) --------------------------UBIQUITIN_1  PDB: A:27-52 -------------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain A from PDB  Type:PROTEIN  Length:72
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:72
                                   238       248       258       268       278       288       298  
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
               SCOP domains d2qhoa_ A: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoA00 A:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-72 UniProt: 229-304                                PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: A:27-52 -------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain A from PDB  Type:PROTEIN  Length:72
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:72
                                   618       628       638       648       658       668       678  
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680
               SCOP domains d2qhoa_ A: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoA00 A:1-72                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-72 UniProt: 609-684                                PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: A:27-52 -------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho A   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain B from PDB  Type:PROTEIN  Length:47
 aligned with UBR5_HUMAN | O95071 from UniProtKB/Swiss-Prot  Length:2799

    Alignment length:52
                                   183       193       203       213       223  
           UBR5_HUMAN   174 SQPQPVIPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 225
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author .-----.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 2qho B 179 S-----IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 225
                            |     |183       193       203       213       223  
                          179   180                                             

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:76
                                    10        20        30        40        50        60        70      
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
               SCOP domains d2qhoc_ C: Ubiquitin                                                         SCOP domains
               CATH domains 2qhoC00 C:1-76                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: C:1-76 UniProt: 1-76                                       PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: C:27-52 ------------------------ PROSITE (5)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 2qho C   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
                                    10        20        30        40        50        60        70      

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:76
                                    10        20        30        40        50        60        70      
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
               SCOP domains d2qhoc_ C: Ubiquitin                                                         SCOP domains
               CATH domains 2qhoC00 C:1-76                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: C:1-76 UniProt: 1-76                                       PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------UBIQUITIN_1  PDB: C:27-52 ------------------------ PROSITE (6)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 2qho C   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
                                    10        20        30        40        50        60        70      

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:76
                                   162       172       182       192       202       212       222      
            UBB_BOVIN   153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
               SCOP domains d2qhoc_ C: Ubiquitin                                                         SCOP domains
               CATH domains 2qhoC00 C:1-76                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: C:1-76 UniProt: 153-228                                    PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: C:27-52 ------------------------ PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------- PROSITE (4)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 2qho C   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
                                    10        20        30        40        50        60        70      

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:76
                                   618       628       638       648       658       668       678      
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
               SCOP domains d2qhoc_ C: Ubiquitin                                                         SCOP domains
               CATH domains 2qhoC00 C:1-76                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: C:1-76 UniProt: 609-684                                    PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: C:27-52 ------------------------ PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------- PROSITE (3)
                 Transcript ---------------------------------------------------------------------------- Transcript
                 2qho C   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  76
                                    10        20        30        40        50        60        70      

Chain D from PDB  Type:PROTEIN  Length:49
 aligned with UBR5_HUMAN | O95071 from UniProtKB/Swiss-Prot  Length:2799

    Alignment length:54
                                   182       192       202       212       222    
           UBR5_HUMAN   173 GSQPQPVIPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 226
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ..-----.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 2qho D 178 GS-----IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 226
                             |     182       192       202       212       222    
                           179   180                                              

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:75
                                    10        20        30        40        50        60        70     
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d2qhoe_ E: Ubiquitin                                                        SCOP domains
               CATH domains 2qhoE00 E:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: E:1-75 UniProt: 1-76                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: E:27-52 ----------------------- PROSITE (5)
                 Transcript --------------------------------------------------------------------------- Transcript
                 2qho E   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70     

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:75
                                    10        20        30        40        50        60        70     
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
               SCOP domains d2qhoe_ E: Ubiquitin                                                        SCOP domains
               CATH domains 2qhoE00 E:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: E:1-75 UniProt: 1-76                                      PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------UBIQUITIN_1  PDB: E:27-52 ----------------------- PROSITE (6)
                 Transcript --------------------------------------------------------------------------- Transcript
                 2qho E   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70     

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:75
                                   238       248       258       268       278       288       298     
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 303
               SCOP domains d2qhoe_ E: Ubiquitin                                                        SCOP domains
               CATH domains 2qhoE00 E:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: E:1-75 UniProt: 229-304                                   PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: E:27-52 ----------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------- PROSITE (4)
                 Transcript --------------------------------------------------------------------------- Transcript
                 2qho E   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70     

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:75
                                   618       628       638       648       658       668       678     
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 683
               SCOP domains d2qhoe_ E: Ubiquitin                                                        SCOP domains
               CATH domains 2qhoE00 E:1-75                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: E:1-75 UniProt: 609-684                                   PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: E:27-52 ----------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------- PROSITE (3)
                 Transcript --------------------------------------------------------------------------- Transcript
                 2qho E   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  75
                                    10        20        30        40        50        60        70     

Chain F from PDB  Type:PROTEIN  Length:49
 aligned with UBR5_HUMAN | O95071 from UniProtKB/Swiss-Prot  Length:2799

    Alignment length:49
                                   189       199       209       219         
           UBR5_HUMAN   180 IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 228
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 2qho F 180 IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 228
                                   189       199       209       219         

Chain G from PDB  Type:PROTEIN  Length:72
 aligned with RL40_BOVIN | P63048 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:72
                                    10        20        30        40        50        60        70  
           RL40_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2qhog_ G: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoG00 G:1-72                                                           CATH domains
           Pfam domains (1) -----ubiquitin-2qhoG01 G:6-72                                            Pfam domains (1)
           Pfam domains (2) -----ubiquitin-2qhoG02 G:6-72                                            Pfam domains (2)
           Pfam domains (3) -----ubiquitin-2qhoG03 G:6-72                                            Pfam domains (3)
           Pfam domains (4) -----ubiquitin-2qhoG04 G:6-72                                            Pfam domains (4)
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: G:1-72 UniProt: 1-76                                   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) --------------------------UBIQUITIN_1  PDB: G:27-52 -------------------- PROSITE (5)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho G   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain G from PDB  Type:PROTEIN  Length:72
 aligned with RS27A_BOVIN | P62992 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:72
                                    10        20        30        40        50        60        70  
          RS27A_BOVIN     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
               SCOP domains d2qhog_ G: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoG00 G:1-72                                                           CATH domains
           Pfam domains (1) -----ubiquitin-2qhoG01 G:6-72                                            Pfam domains (1)
           Pfam domains (2) -----ubiquitin-2qhoG02 G:6-72                                            Pfam domains (2)
           Pfam domains (3) -----ubiquitin-2qhoG03 G:6-72                                            Pfam domains (3)
           Pfam domains (4) -----ubiquitin-2qhoG04 G:6-72                                            Pfam domains (4)
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) UBIQUITIN_2  PDB: G:1-72 UniProt: 1-76                                   PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------ PROSITE (5)
                PROSITE (6) --------------------------UBIQUITIN_1  PDB: G:27-52 -------------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho G   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain G from PDB  Type:PROTEIN  Length:72
 aligned with UBB_BOVIN | P0CG53 from UniProtKB/Swiss-Prot  Length:305

    Alignment length:72
                                   238       248       258       268       278       288       298  
            UBB_BOVIN   229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
               SCOP domains d2qhog_ G: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoG00 G:1-72                                                           CATH domains
           Pfam domains (1) -----ubiquitin-2qhoG01 G:6-72                                            Pfam domains (1)
           Pfam domains (2) -----ubiquitin-2qhoG02 G:6-72                                            Pfam domains (2)
           Pfam domains (3) -----ubiquitin-2qhoG03 G:6-72                                            Pfam domains (3)
           Pfam domains (4) -----ubiquitin-2qhoG04 G:6-72                                            Pfam domains (4)
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: G:1-72 UniProt: 229-304                                PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) --------------------------UBIQUITIN_1  PDB: G:27-52 -------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho G   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain G from PDB  Type:PROTEIN  Length:72
 aligned with UBC_BOVIN | P0CH28 from UniProtKB/Swiss-Prot  Length:690

    Alignment length:72
                                   618       628       638       648       658       668       678  
            UBC_BOVIN   609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680
               SCOP domains d2qhog_ G: Ubiquitin                                                     SCOP domains
               CATH domains 2qhoG00 G:1-72                                                           CATH domains
           Pfam domains (1) -----ubiquitin-2qhoG01 G:6-72                                            Pfam domains (1)
           Pfam domains (2) -----ubiquitin-2qhoG02 G:6-72                                            Pfam domains (2)
           Pfam domains (3) -----ubiquitin-2qhoG03 G:6-72                                            Pfam domains (3)
           Pfam domains (4) -----ubiquitin-2qhoG04 G:6-72                                            Pfam domains (4)
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: G:1-72 UniProt: 609-684                                PROSITE (1)
                PROSITE (2) --------------------------UBIQUITIN_1  PDB: G:27-52 -------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------ Transcript
                 2qho G   1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  72
                                    10        20        30        40        50        60        70  

Chain H from PDB  Type:PROTEIN  Length:48
 aligned with UBR5_HUMAN | O95071 from UniProtKB/Swiss-Prot  Length:2799

    Alignment length:53
                                   183       193       203       213       223   
           UBR5_HUMAN   174 SQPQPVIPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 226
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
           Pfam domains (1) ------E3_UbLigase_EDD-2qhoH01 H:180-226               Pfam domains (1)
           Pfam domains (2) ------E3_UbLigase_EDD-2qhoH02 H:180-226               Pfam domains (2)
           Pfam domains (3) ------E3_UbLigase_EDD-2qhoH03 H:180-226               Pfam domains (3)
           Pfam domains (4) ------E3_UbLigase_EDD-2qhoH04 H:180-226               Pfam domains (4)
         Sec.struct. author .-----.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 2qho H 179 S-----IPASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 226
                            |     |183       193       203       213       223   
                          179   180                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Ubiquitin (279)

(-) Gene Ontology  (31, 46)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (RS27A_BOVIN | P62992)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain A,C,E,G   (UBB_BOVIN | P0CG53)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,C,E,G   (UBC_BOVIN | P0CH28)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain A,C,E,G   (RL40_BOVIN | P63048)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain B,D,F,H   (UBR5_HUMAN | O95071)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043130    ubiquitin binding    Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
    GO:0034450    ubiquitin-ubiquitin ligase activity    Isoenergetic transfer of ubiquitin from one protein to an existing ubiquitin chain via the reaction X-ubiquitin + Y-ubiquitin -> Y-ubiquitin-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:2000780    negative regulation of double-strand break repair    Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair.
    GO:1901315    negative regulation of histone H2A K63-linked ubiquitination    Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A K63-linked ubiquitination.
    GO:0090263    positive regulation of canonical Wnt signaling pathway    Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
    GO:0035413    positive regulation of catenin import into nucleus    Any process that increases the rate, frequency or extent of the directed movement of a catenin protein from the cytoplasm into the nucleus.
    GO:0033160    positive regulation of protein import into nucleus, translocation    Any process that activates or increases the vectorial transfer of a protein from the cytoplasm into the nucleus, across the nuclear membrane.
    GO:0050847    progesterone receptor signaling pathway    Any series of molecular signals generated as a consequence of a progesterone binding to its receptor.
    GO:0000209    protein polyubiquitination    Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0042787    protein ubiquitination involved in ubiquitin-dependent protein catabolic process    The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein.
    GO:0006511    ubiquitin-dependent protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL40_BOVIN | P630481aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2wwz 2wx0 2wx1 3h1u 3m3j 4ljo 4ljp 4s22
        RS27A_BOVIN | P629921aar 1cmx 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2wwz 2wx0 2wx1 3h1u 3m3j 4m0w 4y1h 4z9s 5bz0 5fer 5jqs 5mn9
        UBB_BOVIN | P0CG531aar 1cmx 1e0q 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2wwz 2wx0 2wx1 2xbb 3h1u 3m3j 4bbn
        UBC_BOVIN | P0CH281aar 1cmx 1e0q 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2wwz 2wx0 2wx1 2xbb 2zcc 3h1u 3m3j 4bbn 4xkh 4xyz 5ait
        UBR5_HUMAN | O950711i2t 3pt3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QHO)