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(-) Description

Title :  CRYSTAL STRUCTURE OF K33 LINKED DI-UBIQUITIN
 
Authors :  Y. A. Kristariyanto, S. A. Abdul Rehman, S. Y. Choi, S. Ritorto, D. G. Ca N. A. Morrice, R. Toth, Y. Kulathu
Date :  03 Feb 15  (Deposition) - 18 Mar 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  K33, Lys33 Linked Di-Ubiquitin, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. A. Kristariyanto, S. Y. Choi, S. A. Rehman, M. S. Ritorto, D. G. Campbell, N. A. Morrice, R. Toth, Y. Kulathu
Assembly And Structure Of Lys33-Linked Polyubiquitin Reveal Distinct Conformations.
Biochem. J. V. 467 345 2015
PubMed-ID: 25723849  |  Reference-DOI: 10.1042/BJ20141502

(-) Compounds

Molecule 1 - POLYUBIQUITIN-C
    ChainsA, B
    FragmentUNP RESIDUES 77-152
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymUBIQUITIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3IOD1Ligand/IonIODIDE ION
4PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:42 , LYS A:63 , LYS B:11binding site for residue EDO A 101
2AC2SOFTWARELEU A:71binding site for residue IOD A 102
3AC3SOFTWARELEU A:8 , HIS A:68 , VAL A:70binding site for residue ACT A 103
4AC4SOFTWAREPHE A:4 , LYS A:6 , SER A:20 , HOH A:206 , HOH A:236binding site for residue PG4 A 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XYZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XYZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XYZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XYZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XYZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:74
                                                                                                         
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  4xyz A  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                                    10        20        30        40        50        60        70    

Chain B from PDB  Type:PROTEIN  Length:75
                                                                                                          
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee.....hhhhhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                  4xyz B  1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
                                    10        20        30        40        50        60        70     

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XYZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XYZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XYZ)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UBC_BOVIN | P0CH281aar 1cmx 1e0q 1gjz 1p3q 1ud7 1uzx 1v80 1v81 1wr6 1wrd 1yd8 2c7m 2c7n 2d3g 2dx5 2fid 2fif 2hd5 2oob 2qho 2wwz 2wx0 2wx1 2xbb 2zcc 3h1u 3m3j 4bbn 4xkh 5ait

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XYZ)