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3H1U
Asym. Unit
Info
Asym.Unit (31 KB)
Biol.Unit 1 (14 KB)
Biol.Unit 2 (14 KB)
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(1)
Title
:
STRUCTURE OF UBIQUITIN IN COMPLEX WITH CD IONS
Authors
:
I. A. Qureshi, F. Ferron, P. Cheung, J. Lescar
Date
:
14 Apr 09 (Deposition) - 05 May 09 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cadmium Bound Ubiquitin, Isopeptide Bond, Nucleus, Phosphoprotein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. A. Qureshi, F. Ferron, C. C. Seh, P. Cheung, J. Lescar
Crystallographic Structure Of Ubiquitin In Complex With Cadmium Ions
Bmc Res Notes V. 2 251 2009
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
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Label:
No.
Name
Count
Type
Full Name
1
CD
5
Ligand/Ion
CADMIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:64 , HIS A:68 , HOH A:98
BINDING SITE FOR RESIDUE CD A 77
2
AC2
SOFTWARE
MET A:1 , GLU A:16 , ASP A:32 , HOH A:81
BINDING SITE FOR RESIDUE CD A 78
3
AC3
SOFTWARE
GLU A:18 , ASP A:21 , LYS A:29 , HOH A:80
BINDING SITE FOR RESIDUE CD A 79
4
AC4
SOFTWARE
GLU B:18 , ASP B:21 , LYS B:29 , HOH B:80
BINDING SITE FOR RESIDUE CD B 77
5
AC5
SOFTWARE
GLY A:75 , MET B:1 , GLU B:16 , ASP B:32
BINDING SITE FOR RESIDUE CD B 78
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-75,B:1-75,A:1-75,B:1-75,-|-|-|...)
2: UBIQUITIN_1 (A:27-52,B:27-52,A:27-52,B:27-52,-|...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_BOVIN
1-76
2
A:1-75
B:1-75
RL40_BOVIN
1-76
2
A:1-75
B:1-75
UBB_BOVIN
1-76
77-152
153-228
229-304
2
-
-
-
A:1-75
B:1-75
UBC_BOVIN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
2
-
-
-
-
-
-
-
-
A:1-75
B:1-75
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_BOVIN
27-52
2
A:27-52
B:27-52
RL40_BOVIN
27-52
2
A:27-52
B:27-52
UBB_BOVIN
27-52
103-128
179-204
255-280
2
-
-
-
A:27-52
B:27-52
UBC_BOVIN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
2
-
-
-
-
-
-
-
-
A:27-52
B:27-52
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3h1ua_ (A:)
1b: SCOP_d3h1ub_ (B:)
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Classes
(
)
(
)
Folds
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Cow (Bos taurus) [TaxId: 9913]
(4)
1a
d3h1ua_
A:
1b
d3h1ub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3h1uA00 (A:1-75)
1b: CATH_3h1uB00 (B:1-75)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Bovine (Bos taurus)
(3)
1a
3h1uA00
A:1-75
1b
3h1uB00
B:1-75
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (31 KB)
Header - Asym.Unit
Biol.Unit 1 (14 KB)
Header - Biol.Unit 1
Biol.Unit 2 (14 KB)
Header - Biol.Unit 2
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