2WKT - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316A MUTANT WITH COENZYME A.

Authors :   G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga

Date :   18 Jun 09 (Deposition) - 03 Nov 09 (Release) - 02 Nov 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Acyltransferase, Phb Biosynthesis, Cytoplasm, Transferase, Thiolase Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
The Thiolase Reaction Mechanism: The Importance Of Asn316 And His348 For Stabilizing The Enolate Intermediate Of The Claisen Condensation.
Biochemistry V. 48 11011 2009
PubMed-ID: 19842716 | Reference-DOI: 10.1021/BI901069H

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE
	Chains	:	A, B, D
	EC Number	:	2.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 2-11,12-392
	Mutation	:	YES
	Organism Scientific	:	ZOOGLOEA RAMIGERA
	Organism Taxid	:	350
	Other Details	:	COMPLEXED WITH COA.

Molecule 2 - ACETYL-COA ACETYLTRANSFERASE
	Chains	:	C
	EC Number	:	2.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 2-11,12-392
	Mutation	:	YES
	Organism Scientific	:	ZOOGLOEA RAMIGERA
	Organism Taxid	:	350
	Other Details	:	COMPLEXED WITH COA.

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 19)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	COA	4	Ligand/Ion	COENZYME A
3	CSO	3	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	K	1	Ligand/Ion	POTASSIUM ION
5	NA	1	Ligand/Ion	SODIUM ION
6	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 16)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	COA	4	Ligand/Ion	COENZYME A
3	CSO	3	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	K	-1	Ligand/Ion	POTASSIUM ION
5	NA	-1	Ligand/Ion	SODIUM ION
6	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	COA	2	Ligand/Ion	COENZYME A
3	CSO	1	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	K	-1	Ligand/Ion	POTASSIUM ION
5	NA	-1	Ligand/Ion	SODIUM ION
6	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 11)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	COA	2	Ligand/Ion	COENZYME A
3	CSO	2	Mod. Amino Acid	S-HYDROXYCYSTEINE
4	K	-1	Ligand/Ion	POTASSIUM ION
5	NA	-1	Ligand/Ion	SODIUM ION
6	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:260 , ALA A:262 , ARG A:266	BINDING SITE FOR RESIDUE SO4 A1393
02	AC2	SOFTWARE	SER B:260 , GLU B:263 , ARG B:266 , HOH B:2162 , HOH B:2412 , HOH B:2413 , HOH B:2414 , HOH B:2415	BINDING SITE FOR RESIDUE SO4 B1393
03	AC3	SOFTWARE	LYS B:298 , ARG B:302 , HOH B:2344 , HOH B:2416 , HOH B:2417 , HOH B:2418	BINDING SITE FOR RESIDUE SO4 B1394
04	AC4	SOFTWARE	LYS A:298 , GLU A:301 , ARG A:302 , HOH A:2432	BINDING SITE FOR RESIDUE SO4 A1394
05	AC5	SOFTWARE	LYS D:298 , ARG D:302	BINDING SITE FOR RESIDUE SO4 D1393
06	AC6	SOFTWARE	GLN B:167 , TRP B:168	BINDING SITE FOR RESIDUE SO4 B1395
07	AC7	SOFTWARE	ARG D:41 , ILE D:199 , VAL D:200 , PRO D:201	BINDING SITE FOR RESIDUE SO4 D1394
08	AC8	SOFTWARE	ARG B:41 , VAL B:200 , HOH B:2057 , HOH B:2251 , HOH B:2421 , HOH B:2422 , HOH B:2423	BINDING SITE FOR RESIDUE SO4 B1396
09	AC9	SOFTWARE	ARG B:368 , HOH B:2384	BINDING SITE FOR RESIDUE SO4 B1397
10	BC1	SOFTWARE	GLN A:56 , CL A:1396 , HOH B:2127	BINDING SITE FOR RESIDUE K A1395
11	BC2	SOFTWARE	VAL C:52 , ILE C:53 , LEU C:54 , ALA C:67 , TRP C:83	BINDING SITE FOR RESIDUE NA C1393
12	BC3	SOFTWARE	LEU A:54 , GLY A:55 , GLN A:56 , GLY A:84 , MET A:85 , K A:1395	BINDING SITE FOR RESIDUE CL A1396
13	BC4	SOFTWARE	CSO A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , MET A:228 , LEU A:231 , PHE A:235 , GLY A:244 , SER A:247 , MET A:288 , PHE A:319 , HIS A:348 , HOH A:2289 , HOH A:2300 , HOH A:2322 , HOH A:2324 , HOH A:2325 , HOH A:2434 , HOH A:2435 , HOH A:2436 , HOH A:2439 , HOH A:2440 , LYS C:208 , LYS D:133	BINDING SITE FOR RESIDUE COA A1397
14	BC5	SOFTWARE	CSO B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , LEU B:231 , PHE B:235 , ALA B:243 , GLY B:244 , SER B:247 , LEU B:249 , MET B:288 , PHE B:319 , HOH B:2282 , HOH B:2284 , HOH B:2290 , HOH B:2306 , HOH B:2307 , HOH B:2309 , HOH B:2424 , HOH B:2425 , HOH B:2426 , HOH B:2427 , HOH B:2428 , HOH B:2429 , HOH B:2430 , MET C:134	BINDING SITE FOR RESIDUE COA B1398
15	BC6	SOFTWARE	LYS A:208 , CYS C:89 , LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , SER C:227 , MET C:228 , LEU C:231 , ALA C:243 , GLY C:244 , SER C:247 , MET C:288 , ALA C:318 , PHE C:319 , HOH C:2170 , HOH C:2182 , HOH C:2183 , HOH C:2254	BINDING SITE FOR RESIDUE COA C1394
16	BC7	SOFTWARE	MET A:134 , CSO D:89 , LEU D:148 , HIS D:156 , MET D:157 , ARG D:220 , SER D:227 , LEU D:231 , PHE D:235 , ALA D:243 , GLY D:244 , SER D:247 , GLY D:248 , LEU D:249 , MET D:288 , ALA D:318 , PHE D:319 , HIS D:348 , HOH D:2114 , HOH D:2164 , HOH D:2165 , HOH D:2196 , HOH D:2215 , HOH D:2216 , HOH D:2218	BINDING SITE FOR RESIDUE COA D1395

(no "SS Bond" information available for 2WKT)

(no "Cis Peptide Bond" information available for 2WKT)

(no "SAP(SNP)/Variant" information available for 2WKT)

Asymmetric Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	4	A:85-103 B:85-103 C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	4	A:338-354 B:338-354 C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	4	A:373-386 B:373-386 C:373-386 D:373-386

Biological Unit 1 (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	4	A:85-103 B:85-103 C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	4	A:338-354 B:338-354 C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	4	A:373-386 B:373-386 C:373-386 D:373-386

Biological Unit 2 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	2	- - C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	2	- - C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	2	- - C:373-386 D:373-386

Biological Unit 3 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	2	A:85-103 B:85-103 - -
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	2	A:338-354 B:338-354 - -
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	2	A:373-386 B:373-386 - -

(no "Exon" information available for 2WKT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:390
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:390
                                   11                                                                                                                                                                                                                                                                                                                                                                                             
                                 10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                  | 12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
           THIL_ZOORA     4 PSIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wkta1 A:3-268 automated matches                                                                                                                                                                                                                                         d2wkta2 A:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wktA01 A:3-124,A:194-275  [code=3.40.47.10, no name defined]                                                             ---------------------------2wktA02 A:152-193,A:276-389               2wktA01 A:3-124,A:194-275  [code=3.40.47.10, no name defined]                     2wktA02 A:152-193,A:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhhh..................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wkt A   3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    12        22        32        42        52        62        72        82      | 92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
                                                                                                                 89-CSO

Chain B from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wktb1 B:4-268 automated matches                                                                                                                                                                                                                                        d2wktb2 B:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wktB01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wktB02 B:152-193,B:276-389               2wktB01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                     2wktB02 B:152-193,B:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee......hhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh.hhhhh........hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wkt B   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-CSO

Chain C from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wktc1 C:4-268 automated matches                                                                                                                                                                                                                                        d2wktc2 C:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wktC01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wktC02 C:152-193,C:276-389               2wktC01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                     2wktC02 C:152-193,C:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhhhhh............hhhhhhhhhhhhhhhhhhh..................eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhhh..................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wkt C   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383

Chain D from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wktd1 D:4-268 automated matches                                                                                                                                                                                                                                        d2wktd2 D:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wktD01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wktD02 D:152-193,D:276-389               2wktD01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                     2wktD02 D:152-193,D:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
           Pfam domains (1) -------Thiolase_N-2wktD05 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wktD01 D:269-391                                                                                               - Pfam domains (1)
           Pfam domains (2) -------Thiolase_N-2wktD06 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wktD02 D:269-391                                                                                               - Pfam domains (2)
           Pfam domains (3) -------Thiolase_N-2wktD07 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wktD03 D:269-391                                                                                               - Pfam domains (3)
           Pfam domains (4) -------Thiolase_N-2wktD08 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wktD04 D:269-391                                                                                               - Pfam domains (4)
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhhhhh................hhhhhhhhhhhhhhh..................eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhh............hhhh....eeeeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wkt D   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Thiolase-like (231)

Superfamily: Thiolase-like (231)

Family: automated matches (108)

Protein domain: automated matches (108)

Zoogloea ramigera [TaxId: 350] (6)

1a	d2wkta2	A:269-392
1b	d2wktc2	C:269-392
1c	d2wktd2	D:269-392
1d	d2wktb2	B:269-392

Family: Thiolase-related (67)

Protein domain: automated matches (12)

Zoogloea ramigera [TaxId: 350] (6)

2a	d2wkta1	A:3-268
2b	d2wktc1	C:4-268
2c	d2wktd1	D:4-268
2d	d2wktb1	B:4-268

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Peroxisomal Thiolase; Chain A, domain 1 (130)

Homologous Superfamily: [code=3.40.47.10, no name defined] (130)

Zoogloea ramigera. Organism_taxid: 350. (19)

1a	2wktC01	C:4-124,C:194-275
1b	2wktA02	A:152-193,A:276-389
1c	2wktB02	B:152-193,B:276-389
1d	2wktC02	C:152-193,C:276-389
1e	2wktD02	D:152-193,D:276-389
1f	2wktB01	B:4-124,B:194-275
1g	2wktD01	D:4-124,D:194-275
1h	2wktA01	A:3-124,A:194-275

Asymmetric Unit

Clans(

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Families(

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Organisms( (-)

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Clan: Thiolase (72)

Family: Thiolase_C (23)

Zoogloea ramigera (15)

1a	Thiolase_C-2wktD01	D:269-391
1b	Thiolase_C-2wktD02	D:269-391
1c	Thiolase_C-2wktD03	D:269-391
1d	Thiolase_C-2wktD04	D:269-391

Family: Thiolase_N (23)

Zoogloea ramigera (15)

2a	Thiolase_N-2wktD05	D:11-262
2b	Thiolase_N-2wktD06	D:11-262
2c	Thiolase_N-2wktD07	D:11-262
2d	Thiolase_N-2wktD08	D:11-262

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (THIL_ZOORA | P07097)

molecular function
	GO:0003985	acetyl-CoA C-acetyltransferase activity	Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042619	poly-hydroxybutyrate biosynthetic process	The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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	2wkt
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Access by UniProt ID/Accession number
	THIL_ZOORA \| P07097
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1dlu	UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA
1dlv	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA
1dm3	ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA INCOMPLEX WITH ACETYL-COA
1m1o	CRYSTAL STRUCTURE OF BIOSYNTHETIC THIOLASE, C89A MUTANT,COMPLEXED WITH ACETOACETYL-COA
1m1t	BIOSYNTHETIC THIOLASE, Q64A MUTANT
1m3k	BIOSYNTHETIC THIOLASE, INACTIVE C89A MUTANT
1m3z	BIOSYNTHETIC THIOLASE, C89A MUTANT, COMPLEXED WITH ACETYLCOENZYME A
1m4s	BIOSYNTHETIC THIOLASE, CYS89 ACETYLATED, UNLIGANDED FORM
1m4t	BIOSYNTHETIC THIOLASE, CYS89 BUTYRYLATED
1nl7	Z. RAMIGERA BIOSYNTHETIC THIOLASE, ACETYLATED ENZYMECOMPLEXED WITH COA AT PH 9.5
1ou6	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEXWITH ACETYL-O-PANTETHEINE-11- PIVALATE
1qfl	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
2vtz	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE C89A MUTANT WITH COENZYME A.
2vu0	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE OXIDISED ENZYME WITH COENZYME A.
2vu1	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF WITH O-PANTHETEINE-11-PIVALATE.
2vu2	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX WITH S-PANTETHEINE-11-PIVALATE.
2wku	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H MUTANT.
2wkv	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316D MUTANT WITH COENZYME A.
2wl4	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348A MUTANT WITH COENZYME A.
2wl5	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348N MUTANT WITH COENZYME A.
2wl6	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H-H348N MUTANT.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 19)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (1, 8)

Pfam Domains (2, 8)

Gene Ontology (8, 8)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File