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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.

Authors :   Y. Modis, R. K. Wierenga

Date :   12 Apr 99 (Deposition) - 19 Apr 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.92

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Thiolase, Coa, Tetramerization Motif, Covalent Intermediate, Acetyl-Cysteine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Modis, R. K. Wierenga
A Biosynthetic Thiolase In Complex With A Reaction Intermediate: The Crystal Structure Provides New Insights Into The Catalytic Mechanism.
Structure Fold. Des. V. 7 1279 1999
PubMed-ID: 10545327 | Reference-DOI: 10.1016/S0969-2126(00)80061-1
(for further references see the PDB file header)

Molecule 1 - PROTEIN (ACETOACETYL-COA THIOLASE)
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Plasmid	:	PZTH, BASED ON PTRC99A (PHARMACIA)
	Expression System Strain	:	JM105
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 4-392
	Organism Scientific	:	ZOOGLOEA RAMIGERA
	Organism Taxid	:	350
	Other Details	:	CYS89 IS ACETYLATED
	Synonym	:	BIOSYNTHETIC THIOLASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 14)

No.	Name	Count	Type	Full Name
1	COA	4	Ligand/Ion	COENZYME A
2	SCY	4	Mod. Amino Acid	S-ACETYL-CYSTEINE
3	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS B:298 , ARG B:302 , HOH B:892 , HOH B:938	BINDING SITE FOR RESIDUE SO4 B 719
02	AC2	SOFTWARE	SER A:260 , ALA A:262 , GLU A:263 , ARG A:266 , HOH A:900	BINDING SITE FOR RESIDUE SO4 A 720
03	AC3	SOFTWARE	SER B:260 , GLU B:263 , ARG B:266 , HOH B:900	BINDING SITE FOR RESIDUE SO4 B 721
04	AC4	SOFTWARE	ARG A:302 , HOH A:875 , HOH A:1000	BINDING SITE FOR RESIDUE SO4 A 722
05	AC5	SOFTWARE	ARG A:41 , ILE A:199 , VAL A:200 , PRO A:201 , HOH A:878 , HOH A:975 , HOH A:1009	BINDING SITE FOR RESIDUE SO4 A 723
06	AC6	SOFTWARE	ARG B:41 , ILE B:199 , VAL B:200 , PRO B:201 , HOH B:893 , HOH B:960 , HOH B:963	BINDING SITE FOR RESIDUE SO4 B 724
07	AC7	SOFTWARE	SCY A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , LEU A:231 , ALA A:243 , GLY A:244 , SER A:247 , MET A:288 , PHE A:319 , HIS A:348 , HOH A:755 , HOH A:788 , HOH A:811 , HOH A:817 , HOH A:845 , HOH A:886 , HOH A:889 , HOH A:948 , MET D:134	BINDING SITE FOR RESIDUE COA A 393
08	AC8	SOFTWARE	SCY B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , PHE B:235 , ALA B:243 , GLY B:244 , SER B:247 , MET B:288 , PHE B:319 , HIS B:348 , HOH B:740 , HOH B:768 , HOH B:773 , HOH B:807 , HOH B:931 , MET C:134	BINDING SITE FOR RESIDUE COA B 393
09	AC9	SOFTWARE	SCY C:89 , LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , MET C:228 , PHE C:235 , ALA C:243 , GLY C:244 , SER C:247 , LEU C:249 , MET C:288 , PHE C:319 , HIS C:348	BINDING SITE FOR RESIDUE COA C 393
10	AS1	AUTHOR	SCY A:89 , CYS A:378 , HIS A:348 , COA A:393	CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
11	AS2	AUTHOR	SCY B:89 , CYS B:378 , HIS B:348 , COA B:393	CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
12	AS3	AUTHOR	SCY C:89 , CYS C:378 , HIS C:348 , COA C:393	CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
13	AS4	AUTHOR	SCY D:89 , CYS D:378 , HIS D:348 , COA D:393	CATALYTIC SITE WITH REACTION INTERMEDIATE CONSISTING OF ACETYLATED ENZYME AND COA
14	BC1	SOFTWARE	SCY D:89 , LEU D:148 , HIS D:156 , MET D:157 , ARG D:220 , SER D:227 , MET D:228 , ALA D:243 , GLY D:244 , SER D:247 , MET D:288 , PHE D:319 , HIS D:348 , HOH D:432	BINDING SITE FOR RESIDUE COA D 393

(no "SS Bond" information available for 1QFL)

(no "Cis Peptide Bond" information available for 1QFL)

(no "SAP(SNP)/Variant" information available for 1QFL)

Asymmetric/Biological Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	4	A:85-103 B:85-103 C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	4	A:338-354 B:338-354 C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	4	A:373-386 B:373-386 C:373-386 D:373-386

(no "Exon" information available for 1QFL)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1qfla1 A:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1qfla2 A:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1qflA01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1qflA02 A:152-193,A:276-389               1qflA01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                     1qflA02 A:152-193,A:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhh...hhh.................hhhhhhhh.................hhhhhhhhhhhhhh...................eee..........eeeeehhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.........eee......eee...........hhhhh...............................hhhhhhh.................hhhhhhhhhhhhhhhhhhh...hhh..........hhhhhhhhhhh...hhh......hhhh...hhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qfl A   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain B from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1qflb1 B:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1qflb2 B:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1qflB01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1qflB02 B:152-193,B:276-389               1qflB01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                     1qflB02 B:152-193,B:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhh...hhh.................hhhhhhhh.................hhhhhhhhhhhhhh...................eee..........eeeeehhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.........eee......eee...........hhhhh...............................hhhhhh..................hhhhhhhhhhhhhhhhhhh...hhh..........hhhhhhhhhhh...hhh......hhhh......hhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qfl B   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain C from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1qflc1 C:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1qflc2 C:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1qflC01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1qflC02 C:152-193,C:276-389               1qflC01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                     1qflC02 C:152-193,C:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhh...hhh.................hhhhhhhh.................hhhhhhhhhhhhhh...................eee..........eeeeehhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..........eee......eee...........hhhhhh..............................hhhhhhh.................hhhhhhhhhhhhhhhhhhh...hhh..........hhhhhhhhhhh...hhh......hhhh...hhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qfl C   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain D from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1qfld1 D:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1qfld2 D:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1qflD01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1qflD02 D:152-193,D:276-389               1qflD01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                     1qflD02 D:152-193,D:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
           Pfam domains (1) -------Thiolase_N-1qflD05 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-1qflD01 D:269-391                                                                                               - Pfam domains (1)
           Pfam domains (2) -------Thiolase_N-1qflD06 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-1qflD02 D:269-391                                                                                               - Pfam domains (2)
           Pfam domains (3) -------Thiolase_N-1qflD07 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-1qflD03 D:269-391                                                                                               - Pfam domains (3)
           Pfam domains (4) -------Thiolase_N-1qflD08 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-1qflD04 D:269-391                                                                                               - Pfam domains (4)
         Sec.struct. author .......................hhhhhhhhhhhhhhhh...hhh.................hhhhhhhh.................hhhhhhhhhhhhhh...................eee..........eeeeehhhhhhh........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........eee......eee...........hhhhhh..............................hhhhhh..................hhhhhh.hhhhhhhhhhhh...hhh..........hhhhhhhhhhh...hhh......hhhh...hhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qfl D   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thiolase-like (231)

Superfamily: Thiolase-like (231)

Family: Thiolase-related (67)

Protein domain: Biosynthetic thiolase (16)

Zoogloea ramigera [TaxId: 350] (16)

1a	d1qfla1	A:4-268
1b	d1qfla2	A:269-392
1c	d1qflb1	B:4-268
1d	d1qflb2	B:269-392
1e	d1qflc1	C:4-268
1f	d1qflc2	C:269-392
1g	d1qfld1	D:4-268
1h	d1qfld2	D:269-392

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Peroxisomal Thiolase; Chain A, domain 1 (130)

Homologous Superfamily: [code=3.40.47.10, no name defined] (130)

Zoogloea ramigera. Organism_taxid: 350. (19)

1a	1qflA01	A:4-124,A:194-275
1b	1qflA02	A:152-193,A:276-389
1c	1qflB02	B:152-193,B:276-389
1d	1qflC02	C:152-193,C:276-389
1e	1qflD02	D:152-193,D:276-389
1f	1qflB01	B:4-124,B:194-275
1g	1qflC01	C:4-124,C:194-275
1h	1qflD01	D:4-124,D:194-275

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Thiolase (72)

Family: Thiolase_C (23)

Zoogloea ramigera (15)

1a	Thiolase_C-1qflD01	D:269-391
1b	Thiolase_C-1qflD02	D:269-391
1c	Thiolase_C-1qflD03	D:269-391
1d	Thiolase_C-1qflD04	D:269-391

Family: Thiolase_N (23)

Zoogloea ramigera (15)

2a	Thiolase_N-1qflD05	D:11-262
2b	Thiolase_N-1qflD06	D:11-262
2c	Thiolase_N-1qflD07	D:11-262
2d	Thiolase_N-1qflD08	D:11-262

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (THIL_ZOORA | P07097)

molecular function
	GO:0003985	acetyl-CoA C-acetyltransferase activity	Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042619	poly-hydroxybutyrate biosynthetic process	The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	1qfl
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(no "Related Entries Specified in the PDB File" available for 1QFL)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 12)

Exons (0, 0)

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SCOP Domains (1, 8)

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Pfam Domains (2, 8)

Gene Ontology (8, 8)

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