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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH ACETYL-COA

Authors :   Y. Modis, R. K. Wierenga

Date :   13 Dec 99 (Deposition) - 29 Aug 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Biosynthetic Thiolase, Reaction Intermediate, Acetyl-Coa, Beta-Alpha Fold, Acetyl-Coa Acetyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Modis, R. K. Wierenga
Crystallographic Analysis Of The Reaction Pathway Of Zoogloea Ramigera Biosynthetic Thiolase.
J. Mol. Biol. V. 297 1171 2000
PubMed-ID: 10764581 | Reference-DOI: 10.1006/JMBI.2000.3638
(for further references see the PDB file header)

Molecule 1 - BIOSYNTHETIC THIOLASE ACETYLATED AT CYS89
	Cellular Location	:	CYTOPLASM
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRC99A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	ENTIRE THIOLASE, ACETYLATED AT CYS89
	Organism Scientific	:	ZOOGLOEA RAMIGERA
	Organism Taxid	:	350

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 14)

No.	Name	Count	Type	Full Name
1	ACO	4	Ligand/Ion	ACETYL COENZYME *A
2	SCY	4	Mod. Amino Acid	S-ACETYL-CYSTEINE
3	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS B:298 , ARG B:302 , HOH B:983 , HOH B:1029	BINDING SITE FOR RESIDUE SO4 B 807
02	AC2	SOFTWARE	SER A:260 , GLU A:263 , ARG A:266	BINDING SITE FOR RESIDUE SO4 A 808
03	AC3	SOFTWARE	SER B:260 , GLU B:263 , ARG B:266 , HOH B:991	BINDING SITE FOR RESIDUE SO4 B 809
04	AC4	SOFTWARE	LYS A:298 , ARG A:302 , HOH A:966 , HOH A:1088	BINDING SITE FOR RESIDUE SO4 A 810
05	AC5	SOFTWARE	ARG A:41 , ILE A:199 , VAL A:200 , HOH A:968 , HOH A:1063 , HOH A:1108	BINDING SITE FOR RESIDUE SO4 A 811
06	AC6	SOFTWARE	ARG B:41 , ILE B:199 , VAL B:200 , HOH B:984 , HOH B:1052 , HOH B:1054	BINDING SITE FOR RESIDUE SO4 B 812
07	AC7	SOFTWARE	SCY A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , MET A:228 , ALA A:243 , GLY A:244 , SER A:247 , GLY A:248 , MET A:288 , ALA A:318 , PHE A:319 , HIS A:348 , CYS A:378 , HOH A:846 , HOH A:879 , HOH A:902 , HOH A:908 , HOH A:936 , HOH A:949 , HOH A:976 , HOH A:978 , HOH A:1001 , HOH A:1109 , MET D:134	BINDING SITE FOR RESIDUE ACO A 813
08	AC8	SOFTWARE	SCY B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , ALA B:243 , GLY B:244 , SER B:247 , GLY B:248 , MET B:288 , ALA B:318 , PHE B:319 , HIS B:348 , CYS B:378 , ILE B:379 , GLY B:380 , HOH B:829 , HOH B:854 , HOH B:857 , HOH B:880 , HOH B:896 , HOH B:1022 , HOH B:1096 , MET C:134	BINDING SITE FOR RESIDUE ACO B 814
09	AC9	SOFTWARE	SCY C:89 , LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , SER C:227 , MET C:228 , PHE C:235 , ALA C:243 , GLY C:244 , SER C:247 , GLY C:248 , MET C:288 , ALA C:318 , PHE C:319 , HIS C:348 , CYS C:378 , ILE C:379 , HOH C:881 , HOH C:908	BINDING SITE FOR RESIDUE ACO C 815
10	BC1	SOFTWARE	SCY D:89 , LEU D:148 , HIS D:156 , MET D:157 , GLN D:183 , ARG D:220 , MET D:228 , PHE D:235 , ALA D:243 , GLY D:244 , SER D:247 , GLY D:248 , LEU D:249 , MET D:288 , ALA D:318 , PHE D:319 , HIS D:348 , CYS D:378 , ILE D:379 , GLY D:380 , HOH D:845 , HOH D:855	BINDING SITE FOR RESIDUE ACO D 816

(no "SS Bond" information available for 1DM3)

(no "Cis Peptide Bond" information available for 1DM3)

(no "SAP(SNP)/Variant" information available for 1DM3)

Asymmetric/Biological Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	4	A:85-103 B:85-103 C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	4	A:338-354 B:338-354 C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	4	A:373-386 B:373-386 C:373-386 D:373-386

(no "Exon" information available for 1DM3)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1dm3a1 A:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1dm3a2 A:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1dm3A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1dm3A02 A:152-193,A:276-389               1dm3A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                     1dm3A02 A:152-193,A:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee...........................hhhhh.eeeee.........hhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dm3 A   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain B from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1dm3b1 B:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1dm3b2 B:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1dm3B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1dm3B02 B:152-193,B:276-389               1dm3B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                     1dm3B02 B:152-193,B:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dm3 B   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain C from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1dm3c1 C:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1dm3c2 C:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1dm3C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1dm3C02 C:152-193,C:276-389               1dm3C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                     1dm3C02 C:152-193,C:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhh...hhhhh.eeeee.........hhhhhhhhhhh.....eeeeee...hhhhhhhhhhhhhhhh....eeeeeeee......eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhhh..................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dm3 C   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Chain D from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d1dm3d1 D:4-268 Biosynthetic thiolase                                                                                                                                                                                                                                    d1dm3d2 D:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains 1dm3D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------1dm3D02 D:152-193,D:276-389               1dm3D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                     1dm3D02 D:152-193,D:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhh....eeeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dm3 D   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-SCY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thiolase-like (231)

Superfamily: Thiolase-like (231)

Family: Thiolase-related (67)

Protein domain: Biosynthetic thiolase (16)

Zoogloea ramigera [TaxId: 350] (16)

1a	d1dm3a1	A:4-268
1b	d1dm3a2	A:269-392
1c	d1dm3b1	B:4-268
1d	d1dm3b2	B:269-392
1e	d1dm3c1	C:4-268
1f	d1dm3c2	C:269-392
1g	d1dm3d1	D:4-268
1h	d1dm3d2	D:269-392

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Peroxisomal Thiolase; Chain A, domain 1 (130)

Homologous Superfamily: [code=3.40.47.10, no name defined] (130)

Zoogloea ramigera. Organism_taxid: 350. (3)

1a	1dm3A01	A:4-124,A:194-275
1b	1dm3C01	C:4-124,C:194-275
1c	1dm3D01	D:4-124,D:194-275
1d	1dm3A02	A:152-193,A:276-389
1e	1dm3B02	B:152-193,B:276-389
1f	1dm3C02	C:152-193,C:276-389
1g	1dm3D02	D:152-193,D:276-389
1h	1dm3B01	B:4-124,B:194-275

(no "Pfam Domain" information available for 1DM3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (THIL_ZOORA | P07097)

molecular function
	GO:0003985	acetyl-CoA C-acetyltransferase activity	Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042619	poly-hydroxybutyrate biosynthetic process	The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1dm3)

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Access by PDB/NDB ID
	1dm3
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	THIL_ZOORA \| P07097
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.3.1.9
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	THIL_ZOORA \| P07097
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1dlu	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA (UNLIGANDED)
1dlv	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA
1qfl	ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (1, 8)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File