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(-) Description

Title :  BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348A MUTANT WITH COENZYME A.
 
Authors :  G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
Date :  22 Jun 09  (Deposition) - 03 Nov 09  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Acyltransferase, Cytoplasm, Phb Biosynthesis, Thiolase Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
The Thiolase Reaction Mechanism: The Importance Of Asn316 And His348 For Stabilizing The Enolate Intermediate Of The Claisen Condensation.
Biochemistry V. 48 11011 2009
PubMed-ID: 19842716  |  Reference-DOI: 10.1021/BI901069H

(-) Compounds

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Fragment: RESIDUES 2-11,12-392
    Mutation: YES
    Organism Scientific: ZOOGLOEA RAMIGERA
    Organism Taxid: 350
    Other Details: SUBUNITS A AND B COMPLEXED WITH COA.
    Synonym: ACETOACETYL-COA THIOLASE
 
Molecule 2 - ACETYL-COA ACETYLTRANSFERASE
    Chains: B
    EC Number: 2.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Fragment: RESIDUES 2-11,12-392
    Mutation: YES
    Organism Scientific: ZOOGLOEA RAMIGERA
    Organism Taxid: 350
    Other Details: SUBUNITS A AND B COMPLEXED WITH COA.
    Synonym: ACETOACETYL-COA THIOLASE
 
Molecule 3 - ACETYL-COA ACETYLTRANSFERASE
    Chains: C
    EC Number: 2.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Fragment: RESIDUES 2-11,12-392
    Mutation: YES
    Organism Scientific: ZOOGLOEA RAMIGERA
    Organism Taxid: 350
    Other Details: SUBUNITS A AND B COMPLEXED WITH COA.
    Synonym: ACETOACETYL-COA THIOLASE
 
Molecule 4 - ACETYL-COA ACETYLTRANSFERASE
    Chains: D
    EC Number: 2.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Fragment: RESIDUES 2-11,12-392
    Mutation: YES
    Organism Scientific: ZOOGLOEA RAMIGERA
    Organism Taxid: 350
    Other Details: SUBUNITS A AND B COMPLEXED WITH COA.
    Synonym: ACETOACETYL-COA THIOLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 37)

Asymmetric/Biological Unit (6, 37)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2COA2Ligand/IonCOENZYME A
3CSD2Mod. Amino Acid3-SULFINOALANINE
4CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
5NA3Ligand/IonSODIUM ION
6SO425Ligand/IonSULFATE ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER B:260 , ALA B:262 , ARG B:266BINDING SITE FOR RESIDUE SO4 B1395
02AC2SOFTWARESER A:260 , ALA A:262 , ARG A:266 , HOH A:2390BINDING SITE FOR RESIDUE SO4 A1394
03AC3SOFTWAREARG B:302 , HOH B:2383 , HOH B:2384 , HOH B:2385 , HOH B:2386 , HOH B:2387BINDING SITE FOR RESIDUE SO4 B1396
04AC4SOFTWARELYS A:298 , GLU A:301 , ARG A:302 , HOH A:2393 , HOH A:2394BINDING SITE FOR RESIDUE SO4 A1395
05AC5SOFTWAREARG A:41 , HOH A:2049 , HOH A:2395 , HOH A:2396 , HOH A:2397 , HOH A:2398BINDING SITE FOR RESIDUE SO4 A1396
06AC6SOFTWAREVAL C:57 , ASN C:86 , ASP C:146 , PRO D:59 , GLY D:63 , ASN D:65 , PRO D:66 , HOH D:2187BINDING SITE FOR RESIDUE SO4 D1394
07AC7SOFTWARESER B:4 , HOH B:2392 , HOH B:2394BINDING SITE FOR RESIDUE SO4 B1397
08AC8SOFTWARETHR A:33 , SER A:36 , HOH A:2046 , HOH A:2399 , HOH A:2400 , HOH A:2401 , HOH A:2402BINDING SITE FOR RESIDUE SO4 A1397
09AC9SOFTWARETRP D:168 , HOH D:2188BINDING SITE FOR RESIDUE SO4 D1395
10BC1SOFTWARETHR A:224 , ASP A:226 , HOH A:2404BINDING SITE FOR RESIDUE SO4 A1398
11BC2SOFTWAREHOH C:3004BINDING SITE FOR RESIDUE SO4 C1397
12BC3SOFTWAREASP A:311 , ARG A:368 , ALA A:370 , HOH A:2334 , HOH A:2405 , HOH A:2406 , HOH A:2407 , HOH A:2408BINDING SITE FOR RESIDUE SO4 A1399
13BC4SOFTWAREGLU D:174 , ALA D:177 , PHE D:178 , CYS D:324BINDING SITE FOR RESIDUE SO4 D1396
14BC5SOFTWAREHOH C:3006BINDING SITE FOR RESIDUE SO4 C1398
15BC6SOFTWAREHOH A:3007BINDING SITE FOR RESIDUE SO4 A1403
16BC7SOFTWAREALA C:243 , HOH C:3008 , HOH C:3009 , HOH C:3010BINDING SITE FOR RESIDUE SO4 C1399
17BC8SOFTWARELEU C:148 , HIS C:156 , SER C:247 , GLY C:248 , LEU C:249BINDING SITE FOR RESIDUE SO4 C1393
18BC9SOFTWAREMET B:100 , ILE B:275 , VAL B:276 , SER B:277 , HOH B:2393 , HOH B:2394BINDING SITE FOR RESIDUE SO4 B1398
19CC1SOFTWAREILE D:35 , SER D:36 , LEU D:39 , ALA D:46 , VAL D:49 , ALA D:71 , ALA D:74 , GLY D:75 , VAL D:76BINDING SITE FOR RESIDUE SO4 D1397
20CC2SOFTWAREHOH B:3011BINDING SITE FOR RESIDUE SO4 B1402
21CC3SOFTWAREHOH B:3012BINDING SITE FOR RESIDUE SO4 B1403
22CC4SOFTWAREASP B:226 , HOH B:2395BINDING SITE FOR RESIDUE SO4 B1399
23CC5SOFTWAREGLY A:282 , VAL A:283 , ASP A:284 , HOH A:2409 , HOH A:2410 , HOH A:2411 , HOH A:2412 , GLN B:78 , GLU B:79BINDING SITE FOR RESIDUE SO4 A1400
24CC6SOFTWARETRP A:278 , ALA A:279 , THR A:280 , LYS A:298 , ARG A:302 , HOH A:2415 , ASP B:107BINDING SITE FOR RESIDUE SO4 A1401
25CC7SOFTWAREGLY D:289 , ILE D:293 , GLN D:322 , ALA D:325 , VAL D:326BINDING SITE FOR RESIDUE NA D1398
26CC8SOFTWARELYS B:185 , ARG B:194 , VAL B:339 , ASN B:340BINDING SITE FOR RESIDUE CL B1400
27CC9SOFTWAREGLN C:56 , LEU C:58 , GLU C:117 , SER C:118 , HOH C:2027BINDING SITE FOR RESIDUE NA C1394
28DC1SOFTWAREVAL C:34 , ILE C:35 , VAL C:38 , VAL C:112 , ALA C:255BINDING SITE FOR RESIDUE NA C1395
29DC2SOFTWAREASN C:65 , ARG C:68 , HOH C:2032 , HOH C:2033 , GLY D:380 , MET D:383BINDING SITE FOR RESIDUE CL C1396
30DC3SOFTWARECYS C:125 , PRO D:123 , HIS D:124 , CYS D:125 , THR D:142BINDING SITE FOR RESIDUE CL D1399
31DC4SOFTWARECYS A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , MET A:228 , LEU A:231 , ALA A:243 , GLY A:244 , SER A:247 , LEU A:249 , MET A:288 , PHE A:319 , CSD A:378 , HOH A:2216 , HOH A:2268 , HOH A:2289 , HOH A:2416 , HOH A:2417 , HOH A:2418 , HOH A:2419 , HOH A:2420 , HOH A:2421 , HOH A:2422 , HOH A:2423 , MET D:134BINDING SITE FOR RESIDUE COA A1402
32DC5SOFTWARECSO B:89 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , LEU B:231 , ALA B:243 , GLY B:244 , SER B:247 , LEU B:249 , MET B:288 , ALA B:318 , PHE B:319 , CSD B:378 , HOH B:2172 , HOH B:2290 , HOH B:2291 , HOH B:2376 , HOH B:2396 , HOH B:2397 , HOH B:2398 , HOH B:2399 , HOH B:2400 , HOH B:2401 , HOH B:2402 , HOH B:2403 , HOH B:2404 , HOH B:2405 , MET C:134BINDING SITE FOR RESIDUE COA B1401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WL4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WL4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WL4)

(-) PROSITE Motifs  (3, 12)

Asymmetric/Biological Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOLASE_1PS00098 Thiolases acyl-enzyme intermediate signature.THIL_ZOORA85-103
 
 
 		  4A:85-103
B:85-103
C:85-103
D:85-103
2THIOLASE_2PS00737 Thiolases signature 2.THIL_ZOORA338-354
 
 
 		  4A:338-354
B:338-354
C:338-354
D:338-354
3THIOLASE_3PS00099 Thiolases active site.THIL_ZOORA373-386
 
 
 		  4A:373-386
B:373-386
C:373-386
D:373-386

(-) Exons   (0, 0)

(no "Exon" information available for 2WL4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wl4a1 A:4-268 automated matches                                                                                                                                                                                                                                        d2wl4a2 A:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wl4A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wl4A02 A:152-193,A:276-389               2wl4A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                     2wl4A02 A:152-193,A:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wl4 A   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLcIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    |  383         
                                                                                                                                                                                                                                                                                                                                                                                                                378-CSD          


Chain B from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wl4b1 B:4-268 automated matches                                                                                                                                                                                                                                        d2wl4b2 B:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wl4B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wl4B02 B:152-193,B:276-389               2wl4B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                     2wl4B02 B:152-193,B:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhhh.....eeeeee....hhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee..........hhhhhhhh..................eeeeeeeeeeehhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh.hhhhh........hhhhhhhhhhhhh.hhhh.....hhhhhh....hhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wl4 B   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLcIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    |  383         
                                                                                                                89-CSO                                                                                                                                                                                                                                                                                          378-CSD          


Chain C from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wl4c1 C:4-268 automated matches                                                                                                                                                                                                                                        d2wl4c2 C:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wl4C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wl4C02 C:152-193,C:276-389               2wl4C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                     2wl4C02 C:152-193,C:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...ee........hhhhhhhhhhhhhhh....hhhhh.eeeee.........hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhh.eee..........eeeeehhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhh....................eeeeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhh.hhhhhhhhhhh..hhhhh..eee...hhhhhhhhhhhhh.hhhh............hhhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wl4 C   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         


Chain D from PDB  Type:PROTEIN  Length:389
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:389
                                  11                                                                                                                                                                                                                                                                                                                                                                                             
                                10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                 | |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
           THIL_ZOORA     5 SIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2wl4d1 D:4-268 automated matches                                                                                                                                                                                                                                        d2wl4d2 D:269-392 automated matches                                                                                          SCOP domains
               CATH domains 2wl4D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2wl4D02 D:152-193,D:276-389               2wl4D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                     2wl4D02 D:152-193,D:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
           Pfam domains (1) -------Thiolase_N-2wl4D05 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wl4D01 D:269-391                                                                                               - Pfam domains (1)
           Pfam domains (2) -------Thiolase_N-2wl4D06 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wl4D02 D:269-391                                                                                               - Pfam domains (2)
           Pfam domains (3) -------Thiolase_N-2wl4D07 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wl4D03 D:269-391                                                                                               - Pfam domains (3)
           Pfam domains (4) -------Thiolase_N-2wl4D08 D:11-262                                                                                                                                                                                                                                 ------Thiolase_C-2wl4D04 D:269-391                                                                                               - Pfam domains (4)
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee......hhhhhhhhhhhhh....eeeeeeeee.hhh.eee..........eee..hhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee....................................eeeeeeeeeeehhhhhhh.......eeeeeeee.hhhhhhhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wl4 D   4 SIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    13        23        33        43        53        63        73        83     |  93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383         
                                                                                                                89-CSO
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 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Peroxisomal Thiolase; Chain A, domain 1 (130)
(-)
Homologous Superfamily: [code=3.40.47.10, no name defined] (130)
(-)
Zoogloea ramigera. Organism_taxid: 350. (19)
1a2wl4B01B:4-124,B:194-275
1b2wl4C02C:152-193,C:276-389
1c2wl4D02D:152-193,D:276-389
1d2wl4A02A:152-193,A:276-389
1e2wl4B02B:152-193,B:276-389
1f2wl4D01D:4-124,D:194-275
1g2wl4A01A:4-124,A:194-275
1h2wl4C01C:4-124,C:194-275

(-) Pfam Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Clan: Thiolase (72)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (THIL_ZOORA | P07097)
molecular function
    GO:0003985    acetyl-CoA C-acetyltransferase activity    Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
    GO:0016747    transferase activity, transferring acyl groups other than amino-acyl groups    Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0042619    poly-hydroxybutyrate biosynthetic process    The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2wl4
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  THIL_ZOORA | P07097
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THIL_ZOORA | P07097: 1dlu 1dlv 1dm3 1m1o 1m1t 1m3k 1m3z 1m4s 1m4t 1nl7 1ou6 1qfl 2vtz 2vu0 2vu1 2vu2 2wkt 2wku 2wkv 2wl5 2wl6

(-) Related Entries Specified in the PDB File

1dlu UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA
1dlv BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA
1dm3 ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA INCOMPLEX WITH ACETYL-COA
1m1o CRYSTAL STRUCTURE OF BIOSYNTHETIC THIOLASE, C89A MUTANT,COMPLEXED WITH ACETOACETYL-COA
1m1t BIOSYNTHETIC THIOLASE, Q64A MUTANT
1m3k BIOSYNTHETIC THIOLASE, INACTIVE C89A MUTANT
1m3z BIOSYNTHETIC THIOLASE, C89A MUTANT, COMPLEXED WITH ACETYLCOENZYME A
1m4s BIOSYNTHETIC THIOLASE, CYS89 ACETYLATED, UNLIGANDED FORM
1m4t BIOSYNTHETIC THIOLASE, CYS89 BUTYRYLATED
1nl7 Z. RAMIGERA BIOSYNTHETIC THIOLASE, ACETYLATED ENZYMECOMPLEXED WITH COA AT PH 9.5
1ou6 BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEXWITH ACETYL-O-PANTETHEINE-11- PIVALATE
1qfl BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
2vtz BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE C89A MUTANT WITH COENZYME A.
2vu0 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE OXIDISED ENZYME WITH COENZYME A.
2vu1 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF WITH O-PANTHETEINE-11-PIVALATE.
2vu2 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX WITH S-PANTETHEINE-11-PIVALATE.
2wkt BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316A MUTANT WITH COENZYME A.
2wku BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H MUTANT.
2wkv BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE N316D MUTANT WITH COENZYME A.
2wl5 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348N MUTANT WITH COENZYME A.
2wl6 BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H-H348N MUTANT.