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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE OXIDISED ENZYME WITH COENZYME A.

Authors :   P. Kursula, R. K. Wierenga

Date :   19 May 08 (Deposition) - 28 Oct 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.87

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Acyltransferase, Phb Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Merilainen, W. Schmitz, R. K. Wierenga, P. Kursula
The Sulfur Atoms Of The Substrate Coa And The Catalytic Cysteine Are Required For A Productive Mode Of Substrate Binding In Bacterial Biosynthetic Thiolase, A Thioester-Dependent Enzyme.
Febs J. V. 275 6136 2008
PubMed-ID: 19016856 | Reference-DOI: 10.1111/J.1742-4658.2008.06737.X

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.9
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 2-392
	Organism Scientific	:	ZOOGLOEA RAMIGERA
	Organism Taxid	:	350
	Synonym	:	BIOSYNTHETIC THIOLASE, ACETOACETYL-COA THIOLASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 11)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A
2	CSO	4	Mod. Amino Acid	S-HYDROXYCYSTEINE
3	GOL	1	Ligand/Ion	GLYCEROL
4	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:148 , HIS A:156 , MET A:157 , GLN A:183 , ARG A:220 , SER A:227 , MET A:228 , LEU A:231 , PHE A:235 , ALA A:243 , SER A:247 , MET A:288 , PHE A:319 , HIS A:348 , HOH A:2285 , HOH A:2287 , HOH A:2394 , HOH A:2396 , LYS C:208 , MET D:134	BINDING SITE FOR RESIDUE COA A1393
2	AC2	SOFTWARE	LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , ALA B:243 , GLY B:244 , SER B:247 , PHE B:319 , HIS B:348 , HOH B:2171 , HOH B:2272 , HOH B:2276 , HOH B:2279 , HOH B:2388	BINDING SITE FOR RESIDUE COA B1393
3	AC3	SOFTWARE	LYS A:306 , ILE A:307 , HOH A:2397 , HOH A:2398	BINDING SITE FOR RESIDUE GOL A1394
4	AC4	SOFTWARE	LYS A:298 , ARG A:302 , HOH A:2330 , HOH A:2399 , HOH A:2400	BINDING SITE FOR RESIDUE SO4 A1395
5	AC5	SOFTWARE	SER B:260 , ALA B:262 , ARG B:266	BINDING SITE FOR RESIDUE SO4 B1394
6	AC6	SOFTWARE	SER A:260 , ARG A:266	BINDING SITE FOR RESIDUE SO4 A1396
7	AC7	SOFTWARE	LYS B:298 , ARG B:302 , HOH B:2391	BINDING SITE FOR RESIDUE SO4 B1395

(no "SS Bond" information available for 2VU0)

(no "Cis Peptide Bond" information available for 2VU0)

(no "SAP(SNP)/Variant" information available for 2VU0)

Asymmetric/Biological Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOLASE_1	PS00098	Thiolases acyl-enzyme intermediate signature.	THIL_ZOORA	85-103	4	A:85-103 B:85-103 C:85-103 D:85-103
2	THIOLASE_2	PS00737	Thiolases signature 2.	THIL_ZOORA	338-354	4	A:338-354 B:338-354 C:338-354 D:338-354
3	THIOLASE_3	PS00099	Thiolases active site.	THIL_ZOORA	373-386	4	A:373-386 B:373-386 C:373-386 D:373-386

(no "Exon" information available for 2VU0)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:391
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:391
                                    11                                                                                                                                                                                                                                                                                                                                                                                             
                                  10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                   |11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
           THIL_ZOORA     3 TPSIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2vu0a1 A:2-268 Biosynthetic thiolase                                                                                                                                                                                                                                      d2vu0a2 A:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains --2vu0A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2vu0A02 A:152-193,A:276-389               2vu0A01 A:4-124,A:194-275  [code=3.40.47.10, no name defined]                     2vu0A02 A:152-193,A:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vu0 A   2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    11        21        31        41        51        61        71        81       |91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
                                                                                                                  89-CSO

Chain B from PDB  Type:PROTEIN  Length:391
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:391
                                    11                                                                                                                                                                                                                                                                                                                                                                                             
                                  10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                   |11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
           THIL_ZOORA     3 TPSIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2vu0b1 B:2-268 Biosynthetic thiolase                                                                                                                                                                                                                                      d2vu0b2 B:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains --2vu0B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2vu0B02 B:152-193,B:276-389               2vu0B01 B:4-124,B:194-275  [code=3.40.47.10, no name defined]                     2vu0B02 B:152-193,B:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhhhhhhhhh.hhhhh.eeeee.........hhhhhhhhhh......eeeeee...hhhhhhhhhhhhhhhh.....eeeeeeee.....eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh.hhhhh........hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vu0 B   2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    11        21        31        41        51        61        71        81       |91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
                                                                                                                  89-CSO

Chain C from PDB  Type:PROTEIN  Length:391
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:391
                                    11                                                                                                                                                                                                                                                                                                                                                                                             
                                  10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                   |11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
           THIL_ZOORA     3 TPSIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2vu0c1 C:2-268 Biosynthetic thiolase                                                                                                                                                                                                                                      d2vu0c2 C:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains --2vu0C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2vu0C02 C:152-193,C:276-389               2vu0C01 C:4-124,C:194-275  [code=3.40.47.10, no name defined]                     2vu0C02 C:152-193,C:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhhhhhh..............hhhhhhhhhhhhhhhh..................eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.........eee......eee..........hhhhhhhh..................eeeeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vu0 C   2 TPSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    11        21        31        41        51        61        71        81       |91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
                                                                                                                  89-CSO

Chain D from PDB  Type:PROTEIN  Length:390
 aligned with THIL_ZOORA | P07097 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:390
                                   11                                                                                                                                                                                                                                                                                                                                                                                             
                                 10 |                                                                                                                                                                                                                                                                                                                                                                                             
                                  | 12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
           THIL_ZOORA     4 PSIVIAS-ARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
               SCOP domains d2vu0d1 D:3-268 Biosynthetic thiolase                                                                                                                                                                                                                                     d2vu0d2 D:269-392 Biosynthetic thiolase                                                                                      SCOP domains
               CATH domains -2vu0D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                                                            ---------------------------2vu0D02 D:152-193,D:276-389               2vu0D01 D:4-124,D:194-275  [code=3.40.47.10, no name defined]                     2vu0D02 D:152-193,D:276-389  [code=3.40.47.10, no name defined]                                                   --- CATH domains
           Pfam domains (1) Thiolase_N-2vu0D05 D:3-262                                                                                                                                                                                                                                          ------Thiolase_C-2vu0D01 D:269-391                                                                                               - Pfam domains (1)
           Pfam domains (2) Thiolase_N-2vu0D06 D:3-262                                                                                                                                                                                                                                          ------Thiolase_C-2vu0D02 D:269-391                                                                                               - Pfam domains (2)
           Pfam domains (3) Thiolase_N-2vu0D07 D:3-262                                                                                                                                                                                                                                          ------Thiolase_C-2vu0D03 D:269-391                                                                                               - Pfam domains (3)
           Pfam domains (4) Thiolase_N-2vu0D08 D:3-262                                                                                                                                                                                                                                          ------Thiolase_C-2vu0D04 D:269-391                                                                                               - Pfam domains (4)
         Sec.struct. author ..eeeeeeee...ee........hhhhhhhhhhhhhhhhhh.hhhhh...............hhhhhhhhhh...............hhhhhhhhhhhhhhhh..................eee..........eeeeehhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh........eee......eee..........hhhhhhh...................eeeeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhh.....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------THIOLASE_1         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------THIOLASE_2       ------------------THIOLASE_3    ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2vu0 D   3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLcGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMCIESL 392
                                    12        22        32        42        52        62        72        82      | 92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
                                                                                                                 89-CSO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Thiolase-like (231)

Superfamily: Thiolase-like (231)

Family: Thiolase-related (67)

Protein domain: Biosynthetic thiolase (16)

Zoogloea ramigera [TaxId: 350] (16)

1a	d2vu0a1	A:2-268
1b	d2vu0a2	A:269-392
1c	d2vu0b1	B:2-268
1d	d2vu0b2	B:269-392
1e	d2vu0c1	C:2-268
1f	d2vu0c2	C:269-392
1g	d2vu0d1	D:3-268
1h	d2vu0d2	D:269-392

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Peroxisomal Thiolase; Chain A, domain 1 (130)

Homologous Superfamily: [code=3.40.47.10, no name defined] (130)

Zoogloea ramigera. Organism_taxid: 350. (19)

1a	2vu0A01	A:4-124,A:194-275
1b	2vu0B01	B:4-124,B:194-275
1c	2vu0C01	C:4-124,C:194-275
1d	2vu0D01	D:4-124,D:194-275
1e	2vu0A02	A:152-193,A:276-389
1f	2vu0B02	B:152-193,B:276-389
1g	2vu0C02	C:152-193,C:276-389
1h	2vu0D02	D:152-193,D:276-389

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Thiolase (72)

Family: Thiolase_C (23)

Zoogloea ramigera (15)

1a	Thiolase_C-2vu0D01	D:269-391
1b	Thiolase_C-2vu0D02	D:269-391
1c	Thiolase_C-2vu0D03	D:269-391
1d	Thiolase_C-2vu0D04	D:269-391

Family: Thiolase_N (23)

Zoogloea ramigera (15)

2a	Thiolase_N-2vu0D05	D:3-262
2b	Thiolase_N-2vu0D06	D:3-262
2c	Thiolase_N-2vu0D07	D:3-262
2d	Thiolase_N-2vu0D08	D:3-262

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (THIL_ZOORA | P07097)

molecular function
	GO:0003985	acetyl-CoA C-acetyltransferase activity	Catalysis of the reaction: 2 acetyl-CoA = CoA + acetoacetyl-CoA.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0042619	poly-hydroxybutyrate biosynthetic process	The chemical reactions and pathways resulting in the formation of poly-hydroxybutyrate (PHB), a polymer of beta-hydroxybutyrate and a common storage material of prokaryotic cells.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2vu0)

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	2vu0
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	2.3.1.9
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1dlu	UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA
1dlv	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA
1dm3	ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA INCOMPLEX WITH ACETYL-COA
1m1o	CRYSTAL STRUCTURE OF BIOSYNTHETIC THIOLASE, C89A MUTANT,COMPLEXED WITH ACETOACETYL-COA
1m1t	BIOSYNTHETIC THIOLASE, Q64A MUTANT
1m3k	BIOSYNTHETIC THIOLASE, INACTIVE C89A MUTANT
1m3z	BIOSYNTHETIC THIOLASE, C89A MUTANT, COMPLEXED WITH ACETYLCOENZYME A
1m4s	BIOSYNTHETIC THIOLASE, CYS89 ACETYLATED, UNLIGANDED FORM
1m4t	BIOSYNTHETIC THIOLASE, CYS89 BUTYRYLATED
1nl7	Z. RAMIGERA BIOSYNTHETIC THIOLASE, ACETYLATED ENZYMECOMPLEXED WITH COA AT PH 9.5
1ou6	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEXWITH ACETYL-O-PANTETHEINE-11- PIVALATE
1qfl	BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH A REACTION INTERMEDIATE.
2vtz	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE C89A MUTANT WITH COENZYME A.
2vu1	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF WITH O-PANTHETEINE-11-PIVALATE.
2vu2	BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX WITH S-PANTETHEINE-11-PIVALATE.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 8)

CATH Domains (1, 8)

Pfam Domains (2, 8)

Gene Ontology (8, 8)

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File