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Title :   STRUCTURE OF TAILSPIKE-PROTEIN

Authors :   S. Steinbacher, R. Huber

Date :   26 Jul 96 (Deposition) - 23 Jul 97 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (3x)

Keywords :   Complex, Viral Adhesion Protein, Receptor, Endoglycosidase Carbohydrate, Cell Receptor, Recognition, Binding Protein Lipopolysaccharide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Steinbacher, U. Baxa, S. Miller, A. Weintraub, R. Seckler, R. Huber
Crystal Structure Of Phage P22 Tailspike Protein Complexed With Salmonella Sp. O-Antigen Receptors.
Proc. Natl. Acad. Sci. Usa V. 93 10584 1996
PubMed-ID: 8855221 | Reference-DOI: 10.1073/PNAS.93.20.10584
(for further references see the PDB file header)

Molecule 1 - TAILSPIKE PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	PHAGE P22 GENE 9
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 109-666 LACKING THE N-TERMINAL, HEAD-BINDING DOMAIN
	Gene	:	PHAGE P22 GENE 9
	Organism Scientific	:	ENTEROBACTERIA PHAGE P22
	Organism Taxid	:	10754
	Synonym	:	TAILSPIKE ENDORHAMNOSIDASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 9)

No.	Name	Count	Type	Full Name
1	GLA	2	Ligand/Ion	ALPHA D-GALACTOSE
2	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE
3	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
4	RAM	2	Ligand/Ion	ALPHA-L-RHAMNOSE
5	TYV	2	Ligand/Ion	TYVELOSE

Biological Unit 1 (5, 27)

No.	Name	Count	Type	Full Name
1	GLA	6	Ligand/Ion	ALPHA D-GALACTOSE
2	GLC	3	Ligand/Ion	ALPHA-D-GLUCOSE
3	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
4	RAM	6	Ligand/Ion	ALPHA-L-RHAMNOSE
5	TYV	6	Ligand/Ion	TYVELOSE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MAN A:2 , ARG A:285 , GLU A:309 , VAL A:369 , ASP A:407	BINDING SITE FOR RESIDUE GLA A 1
2	AC2	SOFTWARE	GLA A:1 , TYV A:3 , RAM A:4 , HOH A:744	BINDING SITE FOR RESIDUE MAN A 2
3	AC3	SOFTWARE	MAN A:2 , GLC A:9 , ASP A:303 , THR A:307 , GLU A:309 , LEU A:337 , TRP A:365 , HOH A:726 , HOH A:875	BINDING SITE FOR RESIDUE TYV A 3
4	AC4	SOFTWARE	MAN A:2 , GLA A:5	BINDING SITE FOR RESIDUE RAM A 4
5	AC5	SOFTWARE	RAM A:4 , MAN A:6 , GLC A:9 , GLU A:359 , LYS A:363 , TRP A:365 , HOH A:767 , HOH A:787	BINDING SITE FOR RESIDUE GLA A 5
6	AC6	SOFTWARE	GLA A:5 , TYV A:7 , RAM A:8 , LYS A:363 , GLN A:366 , HOH A:770	BINDING SITE FOR RESIDUE MAN A 6
7	AC7	SOFTWARE	MAN A:6 , VAL A:236	BINDING SITE FOR RESIDUE TYV A 7
8	AC8	SOFTWARE	MAN A:6 , GLU A:359 , LYS A:363 , GLN A:366 , TRP A:391 , ASP A:392 , ASP A:395 , HOH A:874	BINDING SITE FOR RESIDUE RAM A 8
9	AC9	SOFTWARE	TYV A:3 , GLA A:5 , LYS A:302 , ASP A:303 , VAL A:331 , HOH A:875	BINDING SITE FOR RESIDUE GLC A 9

(no "SS Bond" information available for 1TYW)

(no "Cis Peptide Bond" information available for 1TYW)

(no "SAP(SNP)/Variant" information available for 1TYW)

(no "PROSITE Motif" information available for 1TYW)

(no "Exon" information available for 1TYW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:543
 aligned with FIBER_BPP22 | P12528 from UniProtKB/Swiss-Prot  Length:667

    Alignment length:554
                                   123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663    
          FIBER_BPP22   114 YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL 667
               SCOP domains d1tywa_ A: P22 tailspike protein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1tywA00 A:113-666  [code=2.160.20.20, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...eeehhh...hhhhhhh...eeee.........eeee......eeee..eee..eeeeee......eee..eee....................hhhhhhh............hhhhhh...hhhh..hhh......eeeeee.....eee..eee.eeeeee.....eee..eeeee.....eeee.........eeee..eeee.....eeee.........eeee..eee......eee...............eee.eeee......eee....------....................eee.eeee......eeeeee..eee.eeee......eeeeee..eee.eeee...........eee....eee.eee.....-----..eee...eee.......hhheee...................eeeeee...........eeeeeee........eeeeeee........eeeee.hhh..............hhh.....eeeeeeehhh.eeeeeee.....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyw A 113 YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADT------DRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRS-----LTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL 666
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       | -    |  412       422       432       442       452       462       472       482       492       502     |   - |     522       532       542       552       562       572       582       592       602       612       622       632       642       652       662    
                                                                                                                                                                                                                                                                                                                         400    407                                                                                                  508   514

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded right-handed beta-helix (140)

Superfamily: Pectin lyase-like (89)

Family: P22 tailspike protein (18)

Protein domain: P22 tailspike protein (18)

Salmonella phage P22 [TaxId: 10754] (18)

d1tywa_

Asymmetric Unit

Classes(

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Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: Pectate Lyase C-like (105)

Homologous Superfamily: [code=2.160.20.20, no name defined] (19)

Enterobacteria phage p22. Organism_taxid: 10754. (5)

1tywA00

A:113-666

(no "Pfam Domain" information available for 1TYW)

Asymmetric Unit(hide GO term definitions)

Chain A (FIBER_BPP22 | P12528)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
biological process
	GO:0085027	entry into host via enzymatic degradation of host anatomical structure	Penetration by symbiont of a host anatomical structure which provides a barrier to symbiont entry, mediated by symbiont degradative enzymes.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

Asymmetric Unit
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Description

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Chains, Units

Ligands, Modified Residues, Ions (5, 9)

Sites (9, 9)

SS Bonds (0, 0)

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