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2VDI
Asym. Unit
Info
Asym.Unit (813 KB)
Biol.Unit 1 (796 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHLAMYDOMONAS REINHARDTII RUBISCO WITH A LARGE-SUBUNIT C192S MUTATION
Authors
:
M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Date
:
09 Oct 07 (Deposition) - 04 Nov 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Vicinal Cysteines, Co2/O2 Specificity, Photosynthesis, Transit Peptide, Photorespiration, Metal-Binding, Hydroxylation, Oxidoreductase, Methylation, Chloroplast, Calvin Cycle, Monooxygenase, Lyase, Rubisco, Plastid, Magnesium, Acetylation, Carbon Dioxide Fixation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. -J. Garcia-Murria, S. Karkehabadi, J. Marin-Navarro, S. Satagopan, I. Andersson, R. J. Spreitzer, J. Moreno
Structural And Functional Consequences Of The Replacement Of Proximal Residues Cys-172 And Cys- 192 In The Large Subunit Of Ribulose 1, 5- Bisphosphate Carboxylase/Oxygenase From Chlamydomonas Reinhardtii
Biochem. J. V. 411 241 2008
[
close entry info
]
Hetero Components
(7, 107)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: N-METHYL METHIONINE (MMEa)
6b: N-METHYL METHIONINE (MMEb)
6c: N-METHYL METHIONINE (MMEc)
6d: N-METHYL METHIONINE (MMEd)
6e: N-METHYL METHIONINE (MMEe)
6f: N-METHYL METHIONINE (MMEf)
6g: N-METHYL METHIONINE (MMEg)
6h: N-METHYL METHIONINE (MMEh)
7a: S-METHYLCYSTEINE (SMCa)
7b: S-METHYLCYSTEINE (SMCb)
7c: S-METHYLCYSTEINE (SMCc)
7d: S-METHYLCYSTEINE (SMCd)
7e: S-METHYLCYSTEINE (SMCe)
7f: S-METHYLCYSTEINE (SMCf)
7g: S-METHYLCYSTEINE (SMCg)
7h: S-METHYLCYSTEINE (SMCh)
7i: S-METHYLCYSTEINE (SMCi)
7j: S-METHYLCYSTEINE (SMCj)
7k: S-METHYLCYSTEINE (SMCk)
7l: S-METHYLCYSTEINE (SMCl)
7m: S-METHYLCYSTEINE (SMCm)
7n: S-METHYLCYSTEINE (SMCn)
7o: S-METHYLCYSTEINE (SMCo)
7p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
43
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
MME
8
Mod. Amino Acid
N-METHYL METHIONINE
7
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477
BINDING SITE FOR RESIDUE MG A1476
02
AC2
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2124 , HOH A:2133 , HOH A:2150 , HOH A:2151 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2017 , HOH B:2037
BINDING SITE FOR RESIDUE CAP A1477
03
AC3
SOFTWARE
LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1477
BINDING SITE FOR RESIDUE MG B1476
04
AC4
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2038 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:1476 , HOH B:2053 , HOH B:2091 , HOH B:2124 , HOH B:2150 , HOH B:2151 , HOH B:2152
BINDING SITE FOR RESIDUE CAP B1477
05
AC5
SOFTWARE
LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , CAP C:1477
BINDING SITE FOR RESIDUE MG C1476
06
AC6
SOFTWARE
THR C:173 , LYS C:175 , LYS C:177 , KCX C:201 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , MG C:1476 , HOH C:2055 , HOH C:2118 , HOH C:2126 , HOH C:2141 , HOH C:2142 , HOH C:2143 , HOH C:2144 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123
BINDING SITE FOR RESIDUE CAP C1477
07
AC7
SOFTWARE
LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , CAP D:1477
BINDING SITE FOR RESIDUE MG D1476
08
AC8
SOFTWARE
GLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , THR D:173 , LYS D:175 , LYS D:177 , KCX D:201 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404 , MG D:1476 , HOH D:2129 , HOH D:2154 , HOH D:2155 , HOH D:2156 , HOH D:2157 , HOH D:2158
BINDING SITE FOR RESIDUE CAP D1477
09
AC9
SOFTWARE
LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477
BINDING SITE FOR RESIDUE MG E1476
10
BC1
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2110 , HOH E:2138 , HOH E:2155 , HOH E:2156 , HOH E:2157 , HOH E:2158 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123 , HOH F:2015
BINDING SITE FOR RESIDUE CAP E1477
11
BC2
SOFTWARE
LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , CAP F:1477
BINDING SITE FOR RESIDUE MG F1476
12
BC3
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2018 , THR F:173 , LYS F:175 , LYS F:177 , KCX F:201 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404 , MG F:1476 , HOH F:2088 , HOH F:2090 , HOH F:2112 , HOH F:2113 , HOH F:2115
BINDING SITE FOR RESIDUE CAP F1477
13
BC4
SOFTWARE
LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , CAP G:1477
BINDING SITE FOR RESIDUE MG G1476
14
BC5
SOFTWARE
THR G:173 , LYS G:175 , LYS G:177 , KCX G:201 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , MG G:1476 , HOH G:2066 , HOH G:2107 , HOH G:2137 , HOH G:2157 , HOH G:2158 , HOH G:2159 , HOH G:2160 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123
BINDING SITE FOR RESIDUE CAP G1477
15
BC6
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:1477
BINDING SITE FOR RESIDUE MG H1476
16
BC7
SOFTWARE
GLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , HOH G:2047 , THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:1476 , HOH H:2098 , HOH H:2145 , HOH H:2146
BINDING SITE FOR RESIDUE CAP H1477
17
BC8
SOFTWARE
TYR A:24 , THR A:68 , VAL A:69 , ASP A:72 , EDO A:1479
BINDING SITE FOR RESIDUE EDO A1478
18
BC9
SOFTWARE
LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , EDO A:1478
BINDING SITE FOR RESIDUE EDO A1479
19
CC1
SOFTWARE
GLU A:52 , HOH A:2152 , PHE B:469
BINDING SITE FOR RESIDUE EDO A1480
20
CC2
SOFTWARE
ARG A:295 , HIS A:298 , ASP A:473 , HOH A:2153
BINDING SITE FOR RESIDUE EDO A1481
21
CC3
SOFTWARE
TYR H:24 , THR H:68 , VAL H:69 , ASP H:72 , EDO H:1479 , HOH H:2016 , HOH H:2147 , HOH H:2148
BINDING SITE FOR RESIDUE EDO H1478
22
CC4
SOFTWARE
LYS H:18 , TYR H:20 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , EDO H:1478 , HOH H:2005 , HOH H:2148
BINDING SITE FOR RESIDUE EDO H1479
23
CC5
SOFTWARE
PHE G:469 , HOH G:2162 , GLU H:52
BINDING SITE FOR RESIDUE EDO H1480
24
CC6
SOFTWARE
LYS H:466 , PHE H:467 , GLU H:468 , PHE H:469 , HOH H:2149
BINDING SITE FOR RESIDUE EDO H1481
25
CC7
SOFTWARE
ARG H:295 , PHE H:345 , ASP H:473 , HOH H:2150
BINDING SITE FOR RESIDUE EDO H1482
26
CC8
SOFTWARE
TYR G:24 , GLY G:64 , THR G:68 , VAL G:69 , ASP G:72 , HOH G:2161
BINDING SITE FOR RESIDUE EDO G1478
27
CC9
SOFTWARE
VAL G:17 , LYS G:18 , THR G:65 , TRP G:66 , THR G:67 , THR G:68 , HOH G:2016 , HOH G:2161
BINDING SITE FOR RESIDUE EDO G1479
28
DC1
SOFTWARE
LYS G:466 , PHE G:467 , GLU G:468 , PHE G:469 , HOH G:2162
BINDING SITE FOR RESIDUE EDO G1480
29
DC2
SOFTWARE
ARG G:295 , SER G:328 , GLY G:329 , GLU G:336 , GLY G:337 , THR G:342 , PHE G:345
BINDING SITE FOR RESIDUE EDO G1481
30
DC3
SOFTWARE
TYR A:226 , LYS A:227 , HOH A:2071 , LYS O:49 , GLU O:55 , HOH O:2022
BINDING SITE FOR RESIDUE EDO O1141
31
DC4
SOFTWARE
GLY O:37 , ILE O:39 , PHE O:81 , GLY O:82 , CYS O:83
BINDING SITE FOR RESIDUE EDO O1142
32
DC5
SOFTWARE
LEU E:270 , HOH E:2099 , LEU F:270 , HOH F:2132
BINDING SITE FOR RESIDUE EDO F1478
33
DC6
SOFTWARE
PRO E:176 , THR F:63 , GLY F:64 , THR F:65 , THR F:67 , VAL F:69 , ASP F:72 , HOH F:2007 , HOH F:2018 , HOH F:2022
BINDING SITE FOR RESIDUE EDO F1479
34
DC7
SOFTWARE
VAL F:17 , LYS F:18 , THR F:65 , TRP F:66 , THR F:67 , THR F:68
BINDING SITE FOR RESIDUE EDO F1480
35
DC8
SOFTWARE
PHE E:469 , GLU F:52
BINDING SITE FOR RESIDUE EDO F1481
36
DC9
SOFTWARE
LYS F:466 , PHE F:467 , GLU F:468 , PHE F:469
BINDING SITE FOR RESIDUE EDO F1482
37
EC1
SOFTWARE
ARG F:295 , SER F:328 , GLU F:336 , PHE F:345 , HOH F:2097
BINDING SITE FOR RESIDUE EDO F1483
38
EC2
SOFTWARE
TYR C:24 , THR C:68 , VAL C:69 , ASP C:72
BINDING SITE FOR RESIDUE EDO C1478
39
EC3
SOFTWARE
LYS C:18 , THR C:65 , TRP C:66 , THR C:67 , THR C:68
BINDING SITE FOR RESIDUE EDO C1479
40
EC4
SOFTWARE
GLY K:37 , TRP K:38 , ILE K:39 , GLY K:82
BINDING SITE FOR RESIDUE EDO K1141
41
EC5
SOFTWARE
TYR B:24 , THR B:68 , VAL B:69 , ASP B:72 , EDO B:1479 , HOH B:2153
BINDING SITE FOR RESIDUE EDO B1478
42
EC6
SOFTWARE
LYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , EDO B:1478 , HOH B:2008
BINDING SITE FOR RESIDUE EDO B1479
43
EC7
SOFTWARE
GLU B:52 , ALA B:129
BINDING SITE FOR RESIDUE EDO B1480
44
EC8
SOFTWARE
HOH A:2152 , LYS B:466 , GLU B:468 , PHE B:469
BINDING SITE FOR RESIDUE EDO B1481
45
EC9
SOFTWARE
TYR H:226 , LYS H:227 , ALA H:230 , LYS J:49 , GLU J:55 , ASP J:69 , HOH J:2019 , HOH J:2023
BINDING SITE FOR RESIDUE EDO J1141
46
FC1
SOFTWARE
LEU C:270 , HOH C:2145 , HOH C:2146 , LEU D:270
BINDING SITE FOR RESIDUE EDO C1480
47
FC2
SOFTWARE
LEU G:270 , GLY G:273 , PHE G:274 , LEU H:270 , THR H:271
BINDING SITE FOR RESIDUE EDO G1482
48
FC3
SOFTWARE
LEU A:270 , GLY A:273 , PHE A:274 , HOH A:2154 , LEU B:270 , THR B:271
BINDING SITE FOR RESIDUE EDO A1482
49
FC4
SOFTWARE
LYS D:18 , THR D:65 , TRP D:66 , THR D:67 , THR D:68
BINDING SITE FOR RESIDUE EDO D1478
50
FC5
SOFTWARE
PHE C:469 , GLU D:52 , HOH D:2005
BINDING SITE FOR RESIDUE EDO D1479
51
FC6
SOFTWARE
LYS D:466 , GLU D:468 , PHE D:469
BINDING SITE FOR RESIDUE EDO D1480
52
FC7
SOFTWARE
TYR E:24 , GLY E:64 , VAL E:69 , ASP E:72 , EDO E:1479
BINDING SITE FOR RESIDUE EDO E1478
53
FC8
SOFTWARE
LYS E:18 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , EDO E:1478
BINDING SITE FOR RESIDUE EDO E1479
54
FC9
SOFTWARE
GLU E:52
BINDING SITE FOR RESIDUE EDO E1480
55
GC1
SOFTWARE
LYS E:466 , GLU E:468 , PHE E:469 , HOH E:2159
BINDING SITE FOR RESIDUE EDO E1481
56
GC2
SOFTWARE
GLU E:336 , GLY E:337 , GLU E:338 , ASP E:473
BINDING SITE FOR RESIDUE EDO E1482
57
GC3
SOFTWARE
ILE N:39 , GLY N:82 , CYS N:83
BINDING SITE FOR RESIDUE EDO N1141
58
GC4
SOFTWARE
GLY L:37 , TRP L:38 , ILE L:39 , GLY L:82
BINDING SITE FOR RESIDUE EDO L1141
59
GC5
SOFTWARE
GLY J:37 , GLY J:82 , CYS J:83 , HOH J:2036
BINDING SITE FOR RESIDUE EDO J1142
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/C/D/E/F/G/H, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/C/D/E/F/G/H
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,C:196-204,D:19...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d2vdia1 (A:11-150)
1b: SCOP_d2vdib1 (B:8-150)
1c: SCOP_d2vdic1 (C:11-150)
1d: SCOP_d2vdid1 (D:11-150)
1e: SCOP_d2vdie1 (E:11-150)
1f: SCOP_d2vdif1 (F:11-150)
1g: SCOP_d2vdig1 (G:10-150)
1h: SCOP_d2vdih1 (H:11-150)
2a: SCOP_d2vdii_ (I:)
2b: SCOP_d2vdij_ (J:)
2c: SCOP_d2vdik_ (K:)
2d: SCOP_d2vdil_ (L:)
2e: SCOP_d2vdim_ (M:)
2f: SCOP_d2vdin_ (N:)
2g: SCOP_d2vdio_ (O:)
2h: SCOP_d2vdip_ (P:)
3a: SCOP_d2vdia2 (A:151-475)
3b: SCOP_d2vdib2 (B:151-475)
3c: SCOP_d2vdic2 (C:151-475)
3d: SCOP_d2vdid2 (D:151-475)
3e: SCOP_d2vdie2 (E:151-475)
3f: SCOP_d2vdif2 (F:151-475)
3g: SCOP_d2vdig2 (G:151-475)
3h: SCOP_d2vdih2 (H:151-475)
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Families
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
1a
d2vdia1
A:11-150
1b
d2vdib1
B:8-150
1c
d2vdic1
C:11-150
1d
d2vdid1
D:11-150
1e
d2vdie1
E:11-150
1f
d2vdif1
F:11-150
1g
d2vdig1
G:10-150
1h
d2vdih1
H:11-150
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
2a
d2vdii_
I:
2b
d2vdij_
J:
2c
d2vdik_
K:
2d
d2vdil_
L:
2e
d2vdim_
M:
2f
d2vdin_
N:
2g
d2vdio_
O:
2h
d2vdip_
P:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
3a
d2vdia2
A:151-475
3b
d2vdib2
B:151-475
3c
d2vdic2
C:151-475
3d
d2vdid2
D:151-475
3e
d2vdie2
E:151-475
3f
d2vdif2
F:151-475
3g
d2vdig2
G:151-475
3h
d2vdih2
H:151-475
[
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CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_2vdiA01 (A:22-148)
1b: CATH_2vdiC01 (C:22-148)
1c: CATH_2vdiD01 (D:22-148)
1d: CATH_2vdiE01 (E:22-148)
1e: CATH_2vdiF01 (F:22-148)
1f: CATH_2vdiG01 (G:22-148)
1g: CATH_2vdiH01 (H:22-148)
1h: CATH_2vdiB01 (B:22-148)
2a: CATH_2vdiI00 (I:2-140)
2b: CATH_2vdiK00 (K:2-140)
2c: CATH_2vdiL00 (L:2-140)
2d: CATH_2vdiM00 (M:2-140)
2e: CATH_2vdiN00 (N:2-140)
2f: CATH_2vdiO00 (O:2-140)
2g: CATH_2vdiP00 (P:2-140)
2h: CATH_2vdiJ00 (J:2-140)
3a: CATH_2vdiA02 (A:149-462)
3b: CATH_2vdiC02 (C:149-462)
3c: CATH_2vdiD02 (D:149-462)
3d: CATH_2vdiE02 (E:149-462)
3e: CATH_2vdiF02 (F:149-462)
3f: CATH_2vdiG02 (G:149-462)
3g: CATH_2vdiH02 (H:149-462)
3h: CATH_2vdiB02 (B:149-462)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
1a
2vdiA01
A:22-148
1b
2vdiC01
C:22-148
1c
2vdiD01
D:22-148
1d
2vdiE01
E:22-148
1e
2vdiF01
F:22-148
1f
2vdiG01
G:22-148
1g
2vdiH01
H:22-148
1h
2vdiB01
B:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
2a
2vdiI00
I:2-140
2b
2vdiK00
K:2-140
2c
2vdiL00
L:2-140
2d
2vdiM00
M:2-140
2e
2vdiN00
N:2-140
2f
2vdiO00
O:2-140
2g
2vdiP00
P:2-140
2h
2vdiJ00
J:2-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055. Strain: 18-7g.
(2)
3a
2vdiA02
A:149-462
3b
2vdiC02
C:149-462
3c
2vdiD02
D:149-462
3d
2vdiE02
E:149-462
3e
2vdiF02
F:149-462
3f
2vdiG02
G:149-462
3g
2vdiH02
H:149-462
3h
2vdiB02
B:149-462
[
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Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_2vdiH01 (H:154-462)
1b: PFAM_RuBisCO_large_2vdiH02 (H:154-462)
1c: PFAM_RuBisCO_large_2vdiH03 (H:154-462)
1d: PFAM_RuBisCO_large_2vdiH04 (H:154-462)
1e: PFAM_RuBisCO_large_2vdiH05 (H:154-462)
1f: PFAM_RuBisCO_large_2vdiH06 (H:154-462)
1g: PFAM_RuBisCO_large_2vdiH07 (H:154-462)
1h: PFAM_RuBisCO_large_2vdiH08 (H:154-462)
2a: PFAM_RuBisCO_large_N_2vdiH09 (H:21-146)
2b: PFAM_RuBisCO_large_N_2vdiH10 (H:21-146)
2c: PFAM_RuBisCO_large_N_2vdiH11 (H:21-146)
2d: PFAM_RuBisCO_large_N_2vdiH12 (H:21-146)
2e: PFAM_RuBisCO_large_N_2vdiH13 (H:21-146)
2f: PFAM_RuBisCO_large_N_2vdiH14 (H:21-146)
2g: PFAM_RuBisCO_large_N_2vdiH15 (H:21-146)
2h: PFAM_RuBisCO_large_N_2vdiH16 (H:21-146)
3a: PFAM_RuBisCO_small_2vdiP01 (P:11-127)
3b: PFAM_RuBisCO_small_2vdiP02 (P:11-127)
3c: PFAM_RuBisCO_small_2vdiP03 (P:11-127)
3d: PFAM_RuBisCO_small_2vdiP04 (P:11-127)
3e: PFAM_RuBisCO_small_2vdiP05 (P:11-127)
3f: PFAM_RuBisCO_small_2vdiP06 (P:11-127)
3g: PFAM_RuBisCO_small_2vdiP07 (P:11-127)
3h: PFAM_RuBisCO_small_2vdiP08 (P:11-127)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-2vdiH01
H:154-462
1b
RuBisCO_large-2vdiH02
H:154-462
1c
RuBisCO_large-2vdiH03
H:154-462
1d
RuBisCO_large-2vdiH04
H:154-462
1e
RuBisCO_large-2vdiH05
H:154-462
1f
RuBisCO_large-2vdiH06
H:154-462
1g
RuBisCO_large-2vdiH07
H:154-462
1h
RuBisCO_large-2vdiH08
H:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-2vdiH09
H:21-146
2b
RuBisCO_large_N-2vdiH10
H:21-146
2c
RuBisCO_large_N-2vdiH11
H:21-146
2d
RuBisCO_large_N-2vdiH12
H:21-146
2e
RuBisCO_large_N-2vdiH13
H:21-146
2f
RuBisCO_large_N-2vdiH14
H:21-146
2g
RuBisCO_large_N-2vdiH15
H:21-146
2h
RuBisCO_large_N-2vdiH16
H:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-2vdiP01
P:11-127
3b
RuBisCO_small-2vdiP02
P:11-127
3c
RuBisCO_small-2vdiP03
P:11-127
3d
RuBisCO_small-2vdiP04
P:11-127
3e
RuBisCO_small-2vdiP05
P:11-127
3f
RuBisCO_small-2vdiP06
P:11-127
3g
RuBisCO_small-2vdiP07
P:11-127
3h
RuBisCO_small-2vdiP08
P:11-127
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