2OM7 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS

Authors :   S. R. Connell, D. N. Wilson, M. Rost, M. Schueler, J. Giesebrecht, M. Dab T. Mielke, P. Fucini, C. M. T. Spahn

Date :   21 Jan 07 (Deposition) - 15 Jan 08 (Release) - 12 Mar 14 (Revision)

Method :   ELECTRON MICROSCOPY

Resolution :   7.30

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N

Keywords :   Rna-Protein Complex, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. R. Connell, C. Takemoto, D. N. Wilson, H. Wang, K. Murayama, T. Terada, M. Shirouzu, M. Rost, M. Schuler, J. Giesebrecht, M. Dabrowski, T. Mielke, P. Fucini, S. Yokoyama, C. M. Spahn
Structural Basis For Interaction Of The Ribosome With The Switch Regions Of Gtp-Bound Elongation Factors.
Mol. Cell V. 25 751 2007
PubMed-ID: 17349960 | Reference-DOI: 10.1016/J.MOLCEL.2007.01.027

Molecule 1 - FRAGMENT OF 16S RRNA (H14)
	Chains	:	A
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	16S RRNA

Molecule 2 - FRAGMENT OF 16S RRNA (H15)
	Chains	:	B
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	16S RRNA

Molecule 3 - FRAGMENT OF 16S RRNA (H44)
	Chains	:	C
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	16S RRNA

Molecule 4 - 16S RIBOSOMAL RNA (H5)
	Chains	:	D
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	16S RRNA

Molecule 5 - FRAGMENT OF23S RRNA (H95)
	Chains	:	F
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	23S RRNA

Molecule 6 - FRAGMENT OF23S RRNA (H68)
	Chains	:	G
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	23S RRNA

Molecule 7 - FRAGMENT OF23S RRNA (H89)
	Chains	:	H
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	23S RRNA

Molecule 8 - FRAGMENT OF23S RRNA (H42-44)
	Chains	:	I
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	23S RRNA

Molecule 9 - FRAGMENT OF23S RRNA (H76)
	Chains	:	J
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	23S RRNA

Molecule 10 - P/E-TRNA
	Chains	:	M
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	TRNA

Molecule 11 - 30S RIBOSOMAL PROTEIN S12
	Chains	:	E
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	SMALL RIBOSOMAL SUBUNIT PROTEIN S12

Molecule 12 - 50S RIBOSOMAL PROTEIN L1
	Chains	:	K
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	LARGE RIBOSOMAL SUBUNIT PROTEIN L1

Molecule 13 - ELONGATION FACTOR G
	Chains	:	L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	FUSA, FUS
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Synonym	:	EF-G

Molecule 14 - 30S RIBOSOMAL PROTEIN S2
	Chains	:	N
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	SMALL RIBOSOMAL SUBUNIT PROTEIN S2

		1	2	3	4	5	6	7	8	9	10	11	12	13	14
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 6)

No.	Name	Count	Type	Full Name
1	4SU	1	Mod. Nucleotide	4-THIOURIDINE-5'-MONOPHOSPHATE
2	5MC	1	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
3	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
4	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
5	PSU	1	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE

(no "Site" information available for 2OM7)

(no "SS Bond" information available for 2OM7)

(no "Cis Peptide Bond" information available for 2OM7)

Asymmetric/Biological Unit (7, 7)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_RS12_THETH_001 *	P	42	S	RS12_THETH	---	---	E	P	45	S
2	UniProt	VAR_RS12_THETH_002 *	K	43	R	RS12_THETH	---	---	E	K	46	R
3	UniProt	VAR_RS12_THETH_003 *	R	86	C	RS12_THETH	---	---	E	R	89	C
4	UniProt	VAR_RS12_THETH_004 *	R	86	H	RS12_THETH	---	---	E	R	89	H
5	UniProt	VAR_RS12_THETH_005 *	K	88	E	RS12_THETH	---	---	E	K	91	E
6	UniProt	VAR_RS12_THETH_006 *	K	88	R	RS12_THETH	---	---	E	K	91	R
7	UniProt	VAR_RS12_THETH_007 *	P	91	L	RS12_THETH	---	---	E	P	94	L
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (4, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S2_1	PS00962	Ribosomal protein S2 signature 1.	RS2_THET8	7-18	1	N:7-18
2	RIBOSOMAL_S12	PS00055	Ribosomal protein S12 signature.	RS12_THETH	43-50	1	E:46-53
3	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFG_THETH	53-68	1	L:68-68
4	RIBOSOMAL_L1	PS01199	Ribosomal protein L1 signature.	RL1_THET8	121-140	1	K:120-139

(no "Exon" information available for 2OM7)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:RNA  Length:12
                                              
               2om7 A   339 CUCCUACGGGAG   350
                                   348

Chain B from PDB  Type:RNA  Length:10
                                            
               2om7 B   367 UUCCGCGGAG   394
                                || 394
                              371|    
                               390

Chain C from PDB  Type:RNA  Length:96
                                                                                                                                  
               2om7 C  1401 GCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAAC  1501
                                  1410      1420      1430      1440  ||  1452|     1465      1475      1485      1495      
                                                                  1442A| 1447||                                             
                                                                   1442B  1452|                                             
                                                                           1456

Chain D from PDB  Type:RNA  Length:13
                                               
               2om7 D    52 GACAUGCGCAGUU   359
                                  |356   
                                 58|     
                                 354

Chain E from PDB  Type:PROTEIN  Length:125
 aligned with RS12_THETH | P17293 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
         RS12_THETH       2 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAA   126
               SCOP domains d2om7e1 E:5-128 70S ribosome functional complex                                                                             - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Ribosomal_S12-2om7E01 E:5-126                                                                                             --- Pfam domains
         Sec.struct. author .hhhhhhhh...................eeeeeeee..............eeeeee....eeeee............eeee............................................ Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------SR------------------------------------------C-E--L----------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------H-R-------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------RIBOSOMA---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
               2om7 E     5 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAA   129
                                    14        24        34        44        54        64        74        84        94       104       114       124

Chain F from PDB  Type:RNA  Length:29
                                                               
               2om7 F  2646 CUCUUCCUAGUACGAGAGGACCGGAAGGG  2674
                                  2655      2665

Chain G from PDB  Type:RNA  Length:54
                                                                                        
               2om7 G  1840 GUGCCGGAAGGUCAAGGGGAGGGGUGCAAGCCCCGAACCGAAGCCCCGGUGAAC  1902
                                  1849      1859      1878      1888      1898    
                                                   1866|                          
                                                    1876

Chain H from PDB  Type:RNA  Length:42
                                                                            
               2om7 H  2455 GCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGC  2496
                                  2464      2474      2484      2494

Chain I from PDB  Type:RNA  Length:58
                                                                                            
               2om7 I  1051 GCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAAUAGCUCACUGGU  1108
                                  1060      1070      1080      1090      1100

Chain J from PDB  Type:RNA  Length:73
                                                                                                           
               2om7 J  2094 GCUCUUGGUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGGCGCCGGUGAAAUCCACCCUGGCGCGGCUGGGGGC  2195
                                  2103      2113      2123      2161      2171||    2182      2192   
                                                             2130|         2172|                     
                                                              2159          2174

Chain K from PDB  Type:PROTEIN  Length:191
 aligned with RL1_THET8 | Q5SLP7 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:207
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       
          RL1_THET8      19 KVYTIDEAARLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI   225
               SCOP domains d2om7k1 K:      18-224 Ribosomal protein L1                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Ribosomal_      L1-2om7K01 K:18-221                                                                                                                                                                         --- Pfam domains
         Sec.struct. author ....hhhhh.------.............................................................................--------..................--.........................................................................ee....ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------RIBOSOMAL_L1        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2om7 K    18 KVYTIDEAAR------TAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDF--------VMGAVGSKLGRILGPRGL--NPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI   224
                                    27      | 37        47        57        67        77        87        97       107  |      - |     127        |- |     147       157       167       177       187       197       207       217       
                                    27     34                                                                         110      119              136  |                                                                                     
                                                                                                                                                   139

Chain L from PDB  Type:PROTEIN  Length:655
 aligned with EFG_THETH | P13551 from UniProtKB/Swiss-Prot  Length:691

    Alignment length:683
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685   
          EFG_THETH       6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI   688
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----GTP_EFTU-2om7L02 L:10-282                                                                                                                                                                                                                                                        ----------------------------------------GTP_EFTU_D2-2om7L04 L:323-390                                       ----------------------------------------------------------------------------------------EFG_IV-2om7L03 L:479-598                                                                                                -EFG_C-2om7L01 L:600-687                                                                 - Pfam domains
         Sec.struct. author ..hhh.eeeeeeee....hhhhhhhhhhhhhh..----------------------------.eeeeee..eeeeee.......hhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh..eee.eeee.......eeee....eeeee.......ee....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhh........eeee.....eeee........eeeeeeeeee...eeeeeeeeee.eee..eeeee.....eeeeeeeeee....eeee.eee...eeeeee........eee..................eeeeeee..hhhhhhhhhhhhhhhhhh...eeee......eeeee.hhhhhhhhhhhhhh.....eee...eee........eeeeeeeee......eeeeeeeeeee......eeeee.......hhhhhhhhhhhhhhhh............eeeeeeeee......hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...hhhhhhhhhhh..eeeee.....eeeeeeeee.hhheehhhhhhhhh....eeeeeeeeeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------G_TR_1          -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2om7 L     6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRI----------------------------AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLI   688
                                    15        25        35   |     -         -         -  |     75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685   
                                                            39                           68

Chain M from PDB  Type:RNA  Length:74
                                                                                                            
               2om7 M     1 UCCGUGAuAACAAAGCGGuuAUGUACCGGAUUUUUAUUCCGGCUAUcGGGGuuCAAUUCCCCGUCGCGGAGCCA    76
                                   |10     || 21        31        41    ||| 52 ||     62        72    
                                   8-4SU  16| ||                       46||    ||                     
                                           18 ||                        48|    ||                     
                                             20-H2U                      49-5MC||                     
                                              21-H2U                          54-5MU                  
                                                                               55-PSU

Chain N from PDB  Type:PROTEIN  Length:235
 aligned with RS2_THET8 | P80371 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:235
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236     
          RS2_THET8       7 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE   241
               SCOP domains d2om7n1 N:7-241 Ribosomal protein S2                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---Ribosomal_S2-2om7N01 N:10-226                                                                                                                                                                                            --------------- Pfam domains
         Sec.struct. author hhhhhhhhhh........hhhhhhh..eee..eee.hhhhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhhh....ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...........eee..hhhhhhhhhhhhhh...eeeee..........eeee....hhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RIBOSOMAL_S2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2om7 N     7 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE   241
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 2OM7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain E (RS12_THETH | P17293)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0019843	rRNA binding	Interacting selectively and non-covalently with ribosomal RNA.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
	GO:0000049	tRNA binding	Interacting selectively and non-covalently with transfer RNA.
biological process
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
	GO:0015935	small ribosomal subunit	The smaller of the two subunits of a ribosome.

Chain K (RL1_THET8 | Q5SLP7)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0019843	rRNA binding	Interacting selectively and non-covalently with ribosomal RNA.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
	GO:0000049	tRNA binding	Interacting selectively and non-covalently with transfer RNA.
biological process
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0015934	large ribosomal subunit	The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain L (EFG_THETH | P13551)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Chain N (RS2_THET8 | P80371)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0019843	rRNA binding	Interacting selectively and non-covalently with ribosomal RNA.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
	GO:0015935	small ribosomal subunit	The smaller of the two subunits of a ribosome.

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	2om7
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	RS12_THETH \| P17293
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	RS2_THET8 \| P80371
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	RS2_THET8 \| P80371
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1fnm	STRUCTURE OF THERMUS THERMOPHILUS EF-G H573A RELATED ID: EMD-1315 RELATED DB: EMDB
1wdt	CRYSTAL STRUCTURE OF EF-G-2-GTP FROM THERMUS THERMOPHILUS HB8
1yl3	CRYSTAL STRUCTURE OF 70S RIBOSOME
1yl4	CRYSTAL STRUCTURE OF 70S RIBOSOME
2j00	STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME
2j01	STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME

Description

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Ligands, Modified Residues, Ions (5, 6)

Sites (0, 0)

SS Bonds (0, 0)

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SAPs(SNPs)/Variants (7, 7)

PROSITE Motifs (4, 4)

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SCOP Domains (3, 3)

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Pfam Domains (7, 7)

Gene Ontology (18, 35)

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