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(-) Description

Title :  MODIFIED URIDINES WITH C5-METHYLENE SUBSTITUENTS AT THE FIRST POSITION OF THE TRNA ANTICODON STABILIZE U-G WOBBLE PAIRING DURING DECODING
 
Authors :  S. Kurata, A. Weixlbaumer, T. Ohtsuki, T. Shimazaki, T. Wada, Y. Kirino K. Watanabe, V. Ramakrishnan, T. Suzuki
Date :  14 Mar 08  (Deposition) - 29 Apr 08  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X,Y
Keywords :  Trna-Binding, Rrna-Binding, Metal-Binding, Zinc-Finger, Translation, Coiled Coil, Paromomycin, Trna, Zinc, Mrna, Cmo5U, Ribosome, Rna- Binding, Modifiactions, Ribosomal Protein, Ribonucleoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Kurata, A. Weixlbaumer, T. Ohtsuki, T. Shimazaki, T. Wada, Y. Kirino, K. Takai, K. Watanabe, V. Ramakrishnan, T. Suzuki
Modified Uridines With C5-Methylene Substituents At The First Position Of The Trna Anticodon Stabilize U. G Wobble Pairing During Decoding.
J. Biol. Chem. V. 283 18801 2008
PubMed-ID: 18456657  |  Reference-DOI: 10.1074/JBC.M800233200

(-) Compounds

Molecule 1 - 16S RRNA
    ChainsA
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    Other DetailsCHAIN A (16S RNA) HAS E.COLI NUMBERING, BASED ON A STRUCTURAL ALIGNMENT WITH THE CORRESPONDING E.COLI STRUCTURE IN 2AVY
    StrainHB8
 
Molecule 2 - 30S RIBOSOMAL PROTEIN S2
    ChainsB
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 3 - 30S RIBOSOMAL PROTEIN S3
    ChainsC
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 4 - 30S RIBOSOMAL PROTEIN S4
    ChainsD
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 5 - 30S RIBOSOMAL PROTEIN S5
    ChainsE
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 6 - 30S RIBOSOMAL PROTEIN S6
    ChainsF
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymTS9
 
Molecule 7 - 30S RIBOSOMAL PROTEIN S7
    ChainsG
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 8 - 30S RIBOSOMAL PROTEIN S8
    ChainsH
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 9 - 30S RIBOSOMAL PROTEIN S9
    ChainsI
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 10 - 30S RIBOSOMAL PROTEIN S10
    ChainsJ
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 11 - 30S RIBOSOMAL PROTEIN S11
    ChainsK
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 12 - 30S RIBOSOMAL PROTEIN S12
    ChainsL
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 13 - 30S RIBOSOMAL PROTEIN S13
    ChainsM
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 14 - 30S RIBOSOMAL PROTEIN S14 TYPE Z
    ChainsN
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    Synonym30S RIBOSOMAL PROTEIN S14
 
Molecule 15 - 30S RIBOSOMAL PROTEIN S15
    ChainsO
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 16 - 30S RIBOSOMAL PROTEIN S16
    ChainsP
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 17 - 30S RIBOSOMAL PROTEIN S17
    ChainsQ
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 18 - 30S RIBOSOMAL PROTEIN S18
    ChainsR
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 19 - 30S RIBOSOMAL PROTEIN S19
    ChainsS
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 20 - 30S RIBOSOMAL PROTEIN S20
    ChainsT
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
 
Molecule 21 - 30S RIBOSOMAL PROTEIN THX
    ChainsU
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymS31
 
Molecule 22 - 5'-R(*UP*UP*GP*AP*AP*AP)-3'
    ChainsX
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymRNA
 
Molecule 23 - 5'-R(*GP*CP*AP*UP*GP*CP*U*TM2P*AP*AP*AP *AP*CP*AP*UP*GP*C)- 3'
    ChainsY
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymRNA

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQRSTUXY

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 291)

Asymmetric/Biological Unit (5, 291)
No.NameCountTypeFull Name
1K73Ligand/IonPOTASSIUM ION
2MG214Ligand/IonMAGNESIUM ION
3PAR1Ligand/IonPAROMOMYCIN
4TM21Mod. Nucleotide5-{[(2-SULFOETHYL)AMINO]METHYL}URIDINE 5'-(DIHYDROGENPHOSPHATE)
5ZN2Ligand/IonZINC ION

(-) Sites  (264, 264)

Asymmetric Unit (264, 264)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREG A:1405 , U A:1406 , C A:1407 , A A:1408 , C A:1409 , C A:1490 , G A:1491 , A A:1492 , A A:1493 , G A:1494 , U A:1495 , MG A:1755BINDING SITE FOR RESIDUE PAR Z 1
002AC2SOFTWAREG A:157 , G A:158BINDING SITE FOR RESIDUE MG Z 2
003AC3SOFTWAREG A:284 , G A:285 , MG A:1696 , K A:1836BINDING SITE FOR RESIDUE MG Z 4
004AC4SOFTWAREC A:519 , A A:520BINDING SITE FOR RESIDUE MG Z 6
005AC5SOFTWAREG A:724 , G A:725 , G A:854BINDING SITE FOR RESIDUE MG Z 9
006AC6SOFTWAREG A:581 , G A:758BINDING SITE FOR RESIDUE MG Z 10
007AC7SOFTWAREG A:438BINDING SITE FOR RESIDUE MG Z 11
008AC8SOFTWAREG A:309BINDING SITE FOR RESIDUE MG Z 12
009AC9SOFTWAREG A:592 , G A:593 , G A:594 , U A:646BINDING SITE FOR RESIDUE MG Z 13
010AD1SOFTWAREARG M:29 , TRP M:64 , LYS M:65BINDING SITE FOR RESIDUE K Z 261
011AD2SOFTWAREG A:742 , MG A:1623BINDING SITE FOR RESIDUE K Z 262
012AD3SOFTWAREPRO I:123 , TYR I:125BINDING SITE FOR RESIDUE K Z 263
013AD4SOFTWAREG A:769 , C A:770 , A A:802BINDING SITE FOR RESIDUE K Z 264
014AD5SOFTWAREG A:530BINDING SITE FOR RESIDUE K Z 265
015AD6SOFTWARESER D:175 , LEU D:176 , ASP D:177 , LYS D:182BINDING SITE FOR RESIDUE K Z 266
016AD7SOFTWAREC A:1059BINDING SITE FOR RESIDUE K Z 267
017AD8SOFTWAREC A:805 , C A:806BINDING SITE FOR RESIDUE K Z 268
018AD9SOFTWAREC A:897 , G A:898BINDING SITE FOR RESIDUE K Z 269
019BC1SOFTWAREG A:660 , G A:661BINDING SITE FOR RESIDUE MG Z 14
020BC2SOFTWAREA A:1204BINDING SITE FOR RESIDUE MG Z 15
021BC3SOFTWAREG A:260 , U A:261 , U A:264 , ARG T:83BINDING SITE FOR RESIDUE MG Z 16
022BC4SOFTWAREC A:58 , A A:59 , U A:387 , G A:388BINDING SITE FOR RESIDUE MG Z 17
023BC5SOFTWAREG A:11 , U A:12 , G A:21 , G A:22 , C A:23BINDING SITE FOR RESIDUE MG Z 18
024BC6SOFTWAREG A:475 , G A:476 , K A:1826BINDING SITE FOR RESIDUE MG Z 19
025BC7SOFTWAREA A:665 , G A:666 , G A:667BINDING SITE FOR RESIDUE MG Z 20
026BC8SOFTWAREC A:882 , C A:883BINDING SITE FOR RESIDUE MG Z 21
027BC9SOFTWAREC A:48 , U A:114BINDING SITE FOR RESIDUE MG Z 22
028BD1SOFTWAREU A:304BINDING SITE FOR RESIDUE K Z 270
029BD2SOFTWAREU A:304BINDING SITE FOR RESIDUE K Z 271
030BD3SOFTWAREU A:603 , C A:634 , G A:635 , U A:636BINDING SITE FOR RESIDUE K Z 272
031BD4SOFTWAREA A:151 , G A:167 , G A:168BINDING SITE FOR RESIDUE K Z 273
032BD5SOFTWAREG A:570 , MG A:1653BINDING SITE FOR RESIDUE K Z 274
033BD6SOFTWAREGLY E:114 , LYS E:153BINDING SITE FOR RESIDUE K Z 275
034BD7SOFTWAREU A:1196 , G A:1197 , MG A:1746BINDING SITE FOR RESIDUE K Z 276
035BD8SOFTWAREU A:863 , GLU E:83BINDING SITE FOR RESIDUE K Z 277
036BD9SOFTWAREARG S:81BINDING SITE FOR RESIDUE K Z 278
037CC1SOFTWAREG A:741 , G A:742 , K A:1845BINDING SITE FOR RESIDUE MG Z 23
038CC2SOFTWAREG A:1171BINDING SITE FOR RESIDUE MG Z 24
039CC3SOFTWAREG A:297 , G A:299BINDING SITE FOR RESIDUE MG Z 25
040CC4SOFTWAREG A:584 , G A:585BINDING SITE FOR RESIDUE MG Z 26
041CC5SOFTWAREG A:1432 , G A:1467BINDING SITE FOR RESIDUE MG Z 27
042CC6SOFTWAREA A:729BINDING SITE FOR RESIDUE MG Z 28
043CC7SOFTWAREG A:976 , C A:1359BINDING SITE FOR RESIDUE MG Z 29
044CC8SOFTWAREG A:377BINDING SITE FOR RESIDUE MG Z 30
045CC9SOFTWAREG A:941BINDING SITE FOR RESIDUE MG Z 31
046CD1SOFTWAREA A:937 , A A:938BINDING SITE FOR RESIDUE K Z 279
047CD2SOFTWAREG A:517 , U A:531BINDING SITE FOR RESIDUE K Z 280
048CD3SOFTWAREC A:689 , G A:690 , U A:705BINDING SITE FOR RESIDUE K Z 281
049CD4SOFTWAREG A:724BINDING SITE FOR RESIDUE K Z 282
050CD5SOFTWARELEU F:98 , ALA F:99 , GLU R:62BINDING SITE FOR RESIDUE K Z 283
051CD6SOFTWAREU A:358 , U A:359BINDING SITE FOR RESIDUE K Z 284
052CD7SOFTWAREU A:1406 , G A:1488BINDING SITE FOR RESIDUE K Z 285
053CD8SOFTWAREC A:137 , G A:227 , SER P:61 , VAL P:62BINDING SITE FOR RESIDUE K Z 286
054CD9SOFTWAREG A:9 , A A:26BINDING SITE FOR RESIDUE K Z 287
055DC1SOFTWAREG A:438BINDING SITE FOR RESIDUE MG Z 32
056DC2SOFTWAREC A:748 , C A:749 , G A:750BINDING SITE FOR RESIDUE MG Z 33
057DC3SOFTWAREG A:685BINDING SITE FOR RESIDUE MG Z 34
058DC4SOFTWAREA A:766 , C A:811 , C A:812 , MG A:1742BINDING SITE FOR RESIDUE MG Z 36
059DC5SOFTWAREG A:774BINDING SITE FOR RESIDUE MG Z 38
060DC6SOFTWAREA A:777BINDING SITE FOR RESIDUE MG Z 39
061DC7SOFTWAREA A:780 , G A:800BINDING SITE FOR RESIDUE MG Z 40
062DC8SOFTWAREG A:576 , G A:577 , C A:578BINDING SITE FOR RESIDUE MG Z 41
063DC9SOFTWAREG A:362BINDING SITE FOR RESIDUE MG Z 43
064DD1SOFTWAREG A:867BINDING SITE FOR RESIDUE K Z 288
065DD2SOFTWAREU A:65 , G A:66 , C A:381BINDING SITE FOR RESIDUE K Z 289
066DD3SOFTWAREC A:701 , G A:703 , C A:1452BINDING SITE FOR RESIDUE MG Z 300
067EC1SOFTWAREC A:454BINDING SITE FOR RESIDUE MG Z 44
068EC2SOFTWAREG A:459 , C A:461BINDING SITE FOR RESIDUE MG Z 45
069EC3SOFTWAREA A:509 , A A:510BINDING SITE FOR RESIDUE MG Z 46
070EC4SOFTWAREU A:560 , C A:562BINDING SITE FOR RESIDUE MG Z 47
071EC5SOFTWAREC A:47 , C A:48 , G A:115BINDING SITE FOR RESIDUE MG Z 49
072EC6SOFTWAREG A:595 , C A:596 , G A:597 , U A:598BINDING SITE FOR RESIDUE MG Z 50
073EC7SOFTWAREC A:824 , G A:825BINDING SITE FOR RESIDUE MG Z 51
074EC8SOFTWAREG A:858 , G A:869BINDING SITE FOR RESIDUE MG Z 52
075EC9SOFTWAREG A:570 , U A:863 , K A:1855BINDING SITE FOR RESIDUE MG Z 53
076FC1SOFTWAREA A:860BINDING SITE FOR RESIDUE MG Z 55
077FC2SOFTWAREG A:638 , MG A:1667BINDING SITE FOR RESIDUE MG Z 56
078FC3SOFTWAREG A:885 , G A:886 , U A:911BINDING SITE FOR RESIDUE MG Z 57
079FC4SOFTWAREG A:1385BINDING SITE FOR RESIDUE MG Z 58
080FC5SOFTWAREA A:937 , A A:938BINDING SITE FOR RESIDUE MG Z 59
081FC6SOFTWAREC A:934 , U A:1345BINDING SITE FOR RESIDUE MG Z 60
082FC7SOFTWAREG A:1370BINDING SITE FOR RESIDUE MG Z 63
083FC8SOFTWAREU A:636 , G A:637 , MG A:1656BINDING SITE FOR RESIDUE MG Z 67
084FC9SOFTWAREG A:682 , G A:683BINDING SITE FOR RESIDUE MG Z 68
085GC1SOFTWAREU A:1351BINDING SITE FOR RESIDUE MG Z 70
086GC2SOFTWAREC A:980 , VAL N:18 , ALA N:20BINDING SITE FOR RESIDUE MG Z 71
087GC3SOFTWAREG A:1030ABINDING SITE FOR RESIDUE MG Z 72
088GC4SOFTWAREG A:1294 , G A:1295BINDING SITE FOR RESIDUE MG Z 73
089GC5SOFTWAREG A:1441 , THR T:35BINDING SITE FOR RESIDUE MG Z 74
090GC6SOFTWAREG A:1461BINDING SITE FOR RESIDUE MG Z 75
091GC7SOFTWAREG A:1435BINDING SITE FOR RESIDUE MG Z 76
092GC8SOFTWAREA A:1468 , G A:1469BINDING SITE FOR RESIDUE MG Z 77
093GC9SOFTWAREA A:915BINDING SITE FOR RESIDUE MG Z 78
094HC1SOFTWAREU A:192BINDING SITE FOR RESIDUE MG Z 79
095HC2SOFTWAREU A:249 , G A:275 , G A:276BINDING SITE FOR RESIDUE MG Z 80
096HC3SOFTWAREG A:301BINDING SITE FOR RESIDUE MG Z 81
097HC4SOFTWAREG A:299 , A A:300 , G A:558 , U A:560 , G A:566BINDING SITE FOR RESIDUE MG Z 82
098HC5SOFTWAREG A:324BINDING SITE FOR RESIDUE MG Z 83
099HC6SOFTWAREA A:55 , U A:56BINDING SITE FOR RESIDUE MG Z 84
100HC7SOFTWAREU A:516 , A A:532 , A A:533BINDING SITE FOR RESIDUE MG Z 85
101HC8SOFTWAREG A:649 , G A:650BINDING SITE FOR RESIDUE MG Z 86
102HC9SOFTWAREG A:594 , G A:595BINDING SITE FOR RESIDUE MG Z 87
103IC1SOFTWAREA A:608BINDING SITE FOR RESIDUE MG Z 88
104IC2SOFTWAREG A:700BINDING SITE FOR RESIDUE MG Z 89
105IC3SOFTWAREG A:888BINDING SITE FOR RESIDUE MG Z 90
106IC4SOFTWAREA A:53BINDING SITE FOR RESIDUE MG Z 91
107IC5SOFTWAREU A:1065 , C A:1066BINDING SITE FOR RESIDUE MG Z 92
108IC6SOFTWAREA A:865 , C A:866 , G A:1079BINDING SITE FOR RESIDUE MG Z 93
109IC7SOFTWAREA A:1067 , G A:1068 , G A:1094 , G A:1387BINDING SITE FOR RESIDUE MG Z 94
110IC8SOFTWAREU A:1083BINDING SITE FOR RESIDUE MG Z 95
111IC9SOFTWAREG A:286 , MG A:1604BINDING SITE FOR RESIDUE MG Z 96
112JC1SOFTWAREG A:1266BINDING SITE FOR RESIDUE MG Z 97
113JC2SOFTWAREG A:199 , G A:200BINDING SITE FOR RESIDUE MG Z 98
114JC3SOFTWAREU A:129 , C A:131BINDING SITE FOR RESIDUE MG Z 99
115JC4SOFTWAREG A:903BINDING SITE FOR RESIDUE MG Z 100
116JC5SOFTWAREU A:952 , C A:970 , ARG M:125 , LYS M:126BINDING SITE FOR RESIDUE MG Z 101
117JC6SOFTWAREA A:964BINDING SITE FOR RESIDUE MG Z 102
118JC7SOFTWAREC A:924 , G A:925 , G A:927 , U A:1390 , U A:1391BINDING SITE FOR RESIDUE MG Z 103
119JC8SOFTWAREA A:1499 , A A:1500 , G A:1504 , G A:1505BINDING SITE FOR RESIDUE MG Z 108
120JC9SOFTWAREG A:44 , U A:45BINDING SITE FOR RESIDUE MG Z 110
121KC1SOFTWAREG A:138 , G A:139BINDING SITE FOR RESIDUE MG Z 113
122KC2SOFTWAREG A:148 , A A:172BINDING SITE FOR RESIDUE MG Z 114
123KC3SOFTWAREU A:180 , A A:195BINDING SITE FOR RESIDUE MG Z 116
124KC4SOFTWAREG A:181 , U A:182 , G A:183BINDING SITE FOR RESIDUE MG Z 117
125KC5SOFTWAREG A:190KBINDING SITE FOR RESIDUE MG Z 118
126KC6SOFTWAREC A:190 , G A:190H , G A:190IBINDING SITE FOR RESIDUE MG Z 119
127KC7SOFTWAREG A:129A , C A:190C , U A:190D , G A:190GBINDING SITE FOR RESIDUE MG Z 120
128KC8SOFTWAREC A:352BINDING SITE FOR RESIDUE MG Z 122
129KC9SOFTWAREC A:372 , U A:375 , G A:376 , U A:387BINDING SITE FOR RESIDUE MG Z 123
130LC1SOFTWAREG A:410 , A A:431BINDING SITE FOR RESIDUE MG Z 124
131LC2SOFTWAREC A:504 , G A:505BINDING SITE FOR RESIDUE MG Z 125
132LC3SOFTWAREG A:111BINDING SITE FOR RESIDUE MG Z 126
133LC4SOFTWAREU A:705 , A A:706BINDING SITE FOR RESIDUE MG Z 127
134LC5SOFTWAREG A:709BINDING SITE FOR RESIDUE MG Z 128
135LC6SOFTWAREG A:776BINDING SITE FOR RESIDUE MG Z 129
136LC7SOFTWAREA A:782 , A A:794BINDING SITE FOR RESIDUE MG Z 131
137LC8SOFTWAREK A:1824BINDING SITE FOR RESIDUE MG Z 132
138LC9SOFTWAREU A:955 , A A:1225BINDING SITE FOR RESIDUE MG Z 133
139MC1SOFTWAREG A:1053 , G A:1058 , C A:1059 , G A:1198 , U A:1199BINDING SITE FOR RESIDUE MG Z 134
140MC2SOFTWAREC A:1069BINDING SITE FOR RESIDUE MG Z 135
141MC3SOFTWAREC A:1501 , A A:1502 , A A:1503 , A A:1507BINDING SITE FOR RESIDUE MG Z 136
142MC4SOFTWAREG A:926 , G A:1505 , U A:1542 , C A:1543BINDING SITE FOR RESIDUE MG Z 137
143MC5SOFTWAREGLU B:20 , LYS B:74 , ASP B:166 , ASP B:191 , ASP B:205BINDING SITE FOR RESIDUE MG Z 139
144MC6SOFTWARECYS D:9 , LEU D:19 , CYS D:26 , CYS D:31BINDING SITE FOR RESIDUE ZN Z 140
145MC7SOFTWARECYS N:24 , CYS N:27 , CYS N:40 , CYS N:43BINDING SITE FOR RESIDUE ZN Z 141
146MC8SOFTWAREG A:21BINDING SITE FOR RESIDUE MG Z 142
147MC9SOFTWAREA A:116 , G A:117 , G A:289BINDING SITE FOR RESIDUE MG Z 143
148NC1SOFTWAREA A:768BINDING SITE FOR RESIDUE MG Z 144
149NC2SOFTWAREA A:766 , MG A:1636BINDING SITE FOR RESIDUE MG Z 145
150NC3SOFTWAREC A:1054 , G A:1197 , G A:1198BINDING SITE FOR RESIDUE MG Z 146
151NC4SOFTWAREA A:572 , A A:573 , A A:574BINDING SITE FOR RESIDUE MG Z 147
152NC5SOFTWAREG A:944 , G A:945BINDING SITE FOR RESIDUE MG Z 148
153NC6SOFTWAREG A:1053 , C A:1054 , G A:1197 , K A:1856BINDING SITE FOR RESIDUE MG Z 149
154NC7SOFTWAREU A:1095 , G A:1108BINDING SITE FOR RESIDUE MG Z 150
155NC8SOFTWAREC A:1223 , G A:1224BINDING SITE FOR RESIDUE MG Z 151
156NC9SOFTWAREG A:588BINDING SITE FOR RESIDUE MG Z 152
157OC1SOFTWAREA A:964 , U A:1199BINDING SITE FOR RESIDUE MG Z 153
158OC2SOFTWAREC A:979 , C A:980 , U A:981 , G A:1221 , G A:1222BINDING SITE FOR RESIDUE MG Z 154
159OC3SOFTWAREU A:1330 , THR M:20 , ILE M:22 , TYR M:23 , ILE M:25BINDING SITE FOR RESIDUE MG Z 155
160OC4SOFTWAREC A:972 , LYS J:57BINDING SITE FOR RESIDUE MG Z 156
161OC5SOFTWAREC A:1369 , GLU I:110 , ARG I:111 , LYS I:112BINDING SITE FOR RESIDUE MG Z 157
162OC6SOFTWAREA A:109 , A A:329 , G A:331BINDING SITE FOR RESIDUE MG Z 158
163OC7SOFTWAREC A:1359 , THR N:22 , ALA N:30 , VAL N:33 , MG A:1789BINDING SITE FOR RESIDUE MG Z 159
164OC8SOFTWAREG A:1082 , U A:1083BINDING SITE FOR RESIDUE MG Z 160
165OC9SOFTWAREG A:1405 , U A:1406 , PAR A:1601BINDING SITE FOR RESIDUE MG Z 161
166PC1SOFTWAREC A:1243 , THR U:8 , ARG U:9BINDING SITE FOR RESIDUE MG Z 162
167PC2SOFTWAREC A:1109 , A A:1110 , C A:1189BINDING SITE FOR RESIDUE MG Z 163
168PC3SOFTWAREG A:1120BINDING SITE FOR RESIDUE MG Z 164
169PC4SOFTWAREG A:1064 , U A:1065BINDING SITE FOR RESIDUE MG Z 165
170PC5SOFTWAREC A:518 , G A:529 , PRO L:48 , ASN L:49BINDING SITE FOR RESIDUE MG Z 166
171PC6SOFTWAREA A:415 , G A:416BINDING SITE FOR RESIDUE MG Z 167
172PC7SOFTWAREU A:1083BINDING SITE FOR RESIDUE MG Z 168
173PC8SOFTWAREG A:1061 , U A:1062BINDING SITE FOR RESIDUE MG Z 169
174PC9SOFTWAREG A:933 , C A:934BINDING SITE FOR RESIDUE MG Z 170
175QC1SOFTWAREASP Q:13 , MET Q:15 , GLU Q:49BINDING SITE FOR RESIDUE MG Z 171
176QC2SOFTWAREA A:908 , A A:909 , MG A:1783BINDING SITE FOR RESIDUE MG Z 172
177QC3SOFTWAREG A:691 , U A:692 , ASN K:26 , GLY K:52 , LYS K:55BINDING SITE FOR RESIDUE MG Z 173
178QC4SOFTWAREG A:251 , G A:266 , C A:267 , C A:268BINDING SITE FOR RESIDUE MG Z 174
179QC5SOFTWAREC A:1297 , C A:1298 , ARG G:114BINDING SITE FOR RESIDUE MG Z 175
180QC6SOFTWAREG A:236 , C A:237 , LYS Q:40 , TYR Q:42BINDING SITE FOR RESIDUE MG Z 176
181QC7SOFTWAREC A:1158 , U A:1159 , G A:1160BINDING SITE FOR RESIDUE MG Z 177
182QC8SOFTWAREG A:662 , A A:663 , G A:836 , LYS R:61BINDING SITE FOR RESIDUE MG Z 178
183QC9SOFTWAREG A:713 , G A:714BINDING SITE FOR RESIDUE MG Z 179
184RC1SOFTWAREG A:1516 , G A:1517BINDING SITE FOR RESIDUE MG Z 180
185RC2SOFTWAREC A:18 , C A:19 , ASN E:127BINDING SITE FOR RESIDUE MG Z 181
186RC3SOFTWAREC A:1342 , GLN I:124BINDING SITE FOR RESIDUE MG Z 182
187RC4SOFTWAREASP E:147BINDING SITE FOR RESIDUE MG Z 183
188RC5SOFTWAREC A:810 , G A:898 , C A:899BINDING SITE FOR RESIDUE MG Z 184
189RC6SOFTWAREA A:828BINDING SITE FOR RESIDUE MG Z 185
190RC7SOFTWAREG A:1224 , A A:1225 , C A:1322 , GLN M:101BINDING SITE FOR RESIDUE MG Z 186
191RC8SOFTWAREC A:656 , G A:657 , GLN O:62BINDING SITE FOR RESIDUE MG Z 187
192RC9SOFTWAREA A:959 , U A:960 , U A:961BINDING SITE FOR RESIDUE MG Z 188
193SC1SOFTWAREG A:604 , U A:605BINDING SITE FOR RESIDUE MG Z 189
194SC2SOFTWAREG A:836 , U A:850 , G A:851BINDING SITE FOR RESIDUE MG Z 190
195SC3SOFTWAREU A:831BINDING SITE FOR RESIDUE MG Z 191
196SC4SOFTWAREA A:325 , SER T:70 , HIS T:73BINDING SITE FOR RESIDUE MG Z 192
197SC5SOFTWAREA A:1067 , A A:1092 , A A:1093BINDING SITE FOR RESIDUE MG Z 193
198SC6SOFTWAREU A:516 , G A:517 , U A:531BINDING SITE FOR RESIDUE MG Z 194
199SC7SOFTWAREA A:909 , C A:910 , MG A:1765BINDING SITE FOR RESIDUE MG Z 195
200SC8SOFTWAREG A:1417 , G A:1482BINDING SITE FOR RESIDUE MG Z 196
201SC9SOFTWAREG A:662 , A A:663 , U A:835 , G A:836BINDING SITE FOR RESIDUE MG Z 197
202TC1SOFTWAREU A:202 , C A:456 , C A:457BINDING SITE FOR RESIDUE MG Z 198
203TC2SOFTWAREC A:1242 , C A:1243 , U A:1302BINDING SITE FOR RESIDUE MG Z 199
204TC3SOFTWAREC A:121 , C A:123BINDING SITE FOR RESIDUE MG Z 200
205TC4SOFTWAREU A:1358 , C A:1359 , THR N:22 , MG N:102BINDING SITE FOR RESIDUE MG Z 201
206TC5SOFTWAREC A:106 , G A:107 , ARG T:15BINDING SITE FOR RESIDUE MG Z 202
207TC6SOFTWAREG A:1166BINDING SITE FOR RESIDUE MG Z 203
208TC7SOFTWAREG A:474 , ARG P:75 , GLY P:78 , VAL P:79 , PHE P:80 , ARG P:81BINDING SITE FOR RESIDUE MG Z 204
209TC8SOFTWAREG A:592BINDING SITE FOR RESIDUE MG Z 205
210TC9SOFTWAREC A:504 , G A:505 , C A:511 , U A:534BINDING SITE FOR RESIDUE MG Z 206
211UC1SOFTWAREG A:115 , A A:116 , G A:117 , G A:289BINDING SITE FOR RESIDUE MG Z 207
212UC2SOFTWAREA A:572 , A A:819BINDING SITE FOR RESIDUE MG Z 208
213UC3SOFTWAREU A:943 , G A:944 , U A:1232 , G A:1233BINDING SITE FOR RESIDUE MG Z 209
214UC4SOFTWAREU A:1073 , G A:1074 , G A:1082 , U A:1083BINDING SITE FOR RESIDUE MG Z 210
215UC5SOFTWAREC A:1303 , G A:1304 , ASP U:5BINDING SITE FOR RESIDUE MG Z 211
216UC6SOFTWAREC A:817 , G A:818 , C A:1527 , U A:1528BINDING SITE FOR RESIDUE MG Z 212
217UC7SOFTWAREA A:702 , G A:703BINDING SITE FOR RESIDUE MG Z 213
218UC8SOFTWAREA A:1324 , C A:1362BINDING SITE FOR RESIDUE MG Z 214
219UC9SOFTWAREA A:959 , U A:960 , U A:961 , C A:984 , G A:1222 , C A:1223BINDING SITE FOR RESIDUE MG Z 215
220VC1SOFTWAREA A:632 , LYS H:98BINDING SITE FOR RESIDUE MG Z 216
221VC2SOFTWAREG A:293 , A A:303 , U A:304 , G A:305BINDING SITE FOR RESIDUE K Z 217
222VC3SOFTWAREU A:133 , U A:229 , G A:230BINDING SITE FOR RESIDUE K Z 218
223VC4SOFTWAREU A:863BINDING SITE FOR RESIDUE K Z 219
224VC5SOFTWAREG A:577BINDING SITE FOR RESIDUE K Z 220
225VC6SOFTWAREG A:895BINDING SITE FOR RESIDUE K Z 221
226VC7SOFTWAREC A:291 , U A:304 , G A:305BINDING SITE FOR RESIDUE K Z 222
227VC8SOFTWAREG A:576BINDING SITE FOR RESIDUE K Z 223
228VC9SOFTWAREU A:296 , G A:297BINDING SITE FOR RESIDUE K Z 224
229WC1SOFTWAREG A:898 , A A:900BINDING SITE FOR RESIDUE K Z 225
230WC2SOFTWAREG A:257 , G A:258 , G A:266BINDING SITE FOR RESIDUE K Z 226
231WC3SOFTWAREC A:934 , C A:936 , G A:1343BINDING SITE FOR RESIDUE K Z 227
232WC4SOFTWAREG A:1088BINDING SITE FOR RESIDUE K Z 228
233WC5SOFTWAREG A:838BINDING SITE FOR RESIDUE K Z 229
234WC6SOFTWAREU A:14 , U A:17BINDING SITE FOR RESIDUE K Z 230
235WC7SOFTWAREC A:536BINDING SITE FOR RESIDUE K Z 231
236WC8SOFTWAREG A:664BINDING SITE FOR RESIDUE K Z 232
237WC9SOFTWAREG A:406 , A A:496 , A A:497BINDING SITE FOR RESIDUE K Z 233
238XC1SOFTWAREG A:594 , G A:595BINDING SITE FOR RESIDUE K Z 234
239XC2SOFTWAREU A:512 , U A:534 , A A:535BINDING SITE FOR RESIDUE K Z 235
240XC3SOFTWAREG A:944 , G A:945 , C A:1230 , G A:1338BINDING SITE FOR RESIDUE K Z 236
241XC4SOFTWAREMG A:1732BINDING SITE FOR RESIDUE K Z 237
242XC5SOFTWAREG A:191 , U A:192BINDING SITE FOR RESIDUE K Z 238
243XC6SOFTWAREG A:474 , G A:475 , MG A:1619BINDING SITE FOR RESIDUE K Z 239
244XC7SOFTWAREG A:557 , G A:558BINDING SITE FOR RESIDUE K Z 240
245XC8SOFTWAREG A:1185 , G A:1186BINDING SITE FOR RESIDUE K Z 241
246XC9SOFTWAREG A:688 , G A:700BINDING SITE FOR RESIDUE K Z 242
247YC1SOFTWAREG A:247 , G A:278BINDING SITE FOR RESIDUE K Z 243
248YC2SOFTWAREA A:1332 , A A:1333BINDING SITE FOR RESIDUE K Z 244
249YC3SOFTWAREG A:127BINDING SITE FOR RESIDUE K Z 245
250YC4SOFTWAREC A:153 , C A:169BINDING SITE FOR RESIDUE K Z 246
251YC5SOFTWAREA A:1236 , C A:1352BINDING SITE FOR RESIDUE K Z 247
252YC6SOFTWAREG A:299 , A A:300 , U A:565BINDING SITE FOR RESIDUE K Z 248
253YC7SOFTWAREG A:284 , MG A:1604BINDING SITE FOR RESIDUE K Z 249
254YC8SOFTWAREG A:491 , G A:492BINDING SITE FOR RESIDUE K Z 250
255YC9SOFTWAREG A:122 , C A:234BINDING SITE FOR RESIDUE K Z 251
256ZC1SOFTWAREASN E:65 , MET E:136 , ARG E:140BINDING SITE FOR RESIDUE K Z 252
257ZC2SOFTWAREARG K:120BINDING SITE FOR RESIDUE K Z 253
258ZC3SOFTWAREARG T:25BINDING SITE FOR RESIDUE K Z 254
259ZC4SOFTWAREC A:811 , C A:812BINDING SITE FOR RESIDUE K Z 255
260ZC5SOFTWAREG A:226 , G A:227BINDING SITE FOR RESIDUE K Z 256
261ZC6SOFTWAREU A:1381BINDING SITE FOR RESIDUE K Z 257
262ZC7SOFTWAREG A:928BINDING SITE FOR RESIDUE K Z 258
263ZC8SOFTWAREG A:1442BINDING SITE FOR RESIDUE K Z 259
264ZC9SOFTWAREC A:1336 , G A:1337BINDING SITE FOR RESIDUE K Z 260

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VQF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VQF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VQF)

(-) PROSITE Motifs  (21, 21)

Asymmetric/Biological Unit (21, 21)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_S13_2PS50159 Ribosomal protein S13 family profile.RS13_THET84-112  1M:4-112
2S5_DSRBDPS50881 S5 double stranded RNA-binding domain profile.RS5_THET86-69  1E:6-69
3RIBOSOMAL_S2_1PS00962 Ribosomal protein S2 signature 1.RS2_THET87-18  1B:7-18
4RIBOSOMAL_S7PS00052 Ribosomal protein S7 signature.RS7_THET820-46  1G:20-46
5RIBOSOMAL_S14PS00527 Ribosomal protein S14 signature.RS14Z_THEAQ23-45  1N:23-45
RS14Z_THET823-45  1N:23-45
6RIBOSOMAL_S5PS00585 Ribosomal protein S5 signature.RS5_THET823-55  1E:23-55
7RIBOSOMAL_S10PS00361 Ribosomal protein S10 signature.RS10_THET827-42  1J:27-42
8RIBOSOMAL_S18PS00057 Ribosomal protein S18 signature.RS18_THETH32-55  1R:32-55
9KH_TYPE_2PS50823 Type-2 KH domain profile.RS3_THET839-107  1C:39-107
10RIBOSOMAL_S15PS00362 Ribosomal protein S15 signature.RS15_THET839-69  1O:39-69
11RIBOSOMAL_S12PS00055 Ribosomal protein S12 signature.RS12_THET843-50  1L:46-53
12RIBOSOMAL_S6PS01048 Ribosomal protein S6 signature.RS6_THET844-53  1F:44-53
13RIBOSOMAL_S19PS00323 Ribosomal protein S19 signature.RS19_THET853-77  1S:53-77
14RIBOSOMAL_S17PS00056 Ribosomal protein S17 signature.RS17_THETH54-66  1Q:54-66
15RIBOSOMAL_S9PS00360 Ribosomal protein S9 signature.RS9_THET267-85  1I:67-85
16RIBOSOMAL_S13_1PS00646 Ribosomal protein S13 signature.RS13_THET888-101  1M:88-101
17RIBOSOMAL_S11PS00054 Ribosomal protein S11 signature.RS11_THET895-117  1K:95-117
18RIBOSOMAL_S4PS00632 Ribosomal protein S4 signature.RS4_THET897-121  1D:97-121
19S4PS50889 S4 RNA-binding domain profile.RS4_THET899-161  1D:99-161
20RIBOSOMAL_S8PS00053 Ribosomal protein S8 signature.RS8_THEAQ108-125  1H:108-125
RS8_THET8108-125  1H:108-125
21RIBOSOMAL_S3PS00548 Ribosomal protein S3 signature.RS3_THET8163-197  1C:163-197

(-) Exons   (0, 0)

(no "Exon" information available for 2VQF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:RNA  Length:1513
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               2vqf A     5 UGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACUUUCU  1544
                                    14        24        34        44        54        64     || 76       |89   ||  101       111       121       130       140       150       160       170       180       190||||||190J||     198     ||219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439||     450       460  ||   480       490 ||    501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841|      857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1006      1016      1026    ||1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1362      1372      1382      1392      1402      1412      1422      1432      1442||    1454||    1467      1477      1487      1497      1507      1517      1527      1541   
                                                                                            70|         84|   93|  99|                         129A                                                          190A|||||190J||           204|                                                                                                                                                                                                                             440|                  463|               492|                                                                                                                                                                                                                                                                                                                                                        841|                                                                                                                                                       1003A                       1030A|||                                                                                                                                       1169|                                                                                                                                                                                          1361A                                                                              1443|     1455|                                                                       1534|     
                                                                                             73          88    95  101                                                                                        190B|||||190K|            216                                                                                                                                                                                                                              442                   474                494                                                                                                                                                                                                                                                                                                                                                         848                                                                                                                                                                                    1030B||                                                                                                                                        1171                                                                                                                                                                                                                                                                              1446      1459                                                                        1539     
                                                                                                                                                                                                               190C|||||190L                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1030C|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                190D|||||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              1030D                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                 190E||||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                                                                                                                                                                                                                  190F|||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                                                                                                                                                                                                                   190G||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                                                                                                                                                                                                                    190H|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                                                                                                                                                                                                                     190I                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:235
 aligned with RS2_THET8 | P80371 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:235
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236     
          RS2_THET8       7 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE   241
               SCOP domains d2vqfb1 B:7-241 Ribosomal protein S2                                                                                                                                                                                                        SCOP domains
               CATH domains -----------------2vqfB01 B:24-97,B:154-241                                                 --------------------------------------------------------2vqfB01 B:24-97,B:154-241 Glucose-6-phosphate isomerase like protein; domain 1           CATH domains
               Pfam domains ---Ribosomal_S2-2vqfB01 B:10-226                                                                                                                                                                                            --------------- Pfam domains
         Sec.struct. author ..................hhhhhh.eeeee..eeeehhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhh....ee..........hhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhh...hhhhh......eeee.....hhhhhhhhhhh....eeee....hhhhh.eeee....hhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) RIBOSOMAL_S2------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf B     7 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE   241
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236     

Chain C from PDB  Type:PROTEIN  Length:207
 aligned with RS3_THET8 | P80372 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:207
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       
          RS3_THET8       2 GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVI   208
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------2vqfC01 C:17-107  [code=3.30.300.20, no name defined]                                      2vqfC02 C:108-208  [code=3.30.1140.32, no name defined]                                               CATH domains
               Pfam domains ------------------------------------KH_2-2vqfC01 C:38-111                                                     -------Ribosomal_S3_C-2vqfC02 C:119-202                                                    ------ Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhhhh......eeee............eee.hhhhhhh...hhhhhhhhhhhhhh.......eee......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...eeeeee..hhhhh........eee..........eeeeee..........eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (8)
                PROSITE (9) -------------------------------------KH_TYPE_2  PDB: C:39-107 UniProt: 39-107                             ----------------------------------------------------------------------------------------------------- PROSITE (9)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------RIBOSOMAL_S3  PDB: C:163-197       ----------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf C     2 GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVI   208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       

Chain D from PDB  Type:PROTEIN  Length:208
 aligned with RS4_THET8 | P80373 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:208
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        
          RS4_THET8       2 GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR   209
               SCOP domains d2vqfd1 D:2-209 Ribosomal protein S4                                                                                                                                                                             SCOP domains
               CATH domains 2vqfD01 D:2-97,D:195-209 Ribosomal Protein S4 Delta 41; Chain A, domain 1                       2vqfD02 D:98-194                                                                                 2vqfD01         CATH domains
               Pfam domains Ribosomal_S4-2vqfD02 D:2-98                                                                      S4-2vqfD01 D:99-146                             --------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh..............hhhhhh...............hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhh..eee..ee............eeeehhhhhhhhhhhhhhhh.........eeee....eeee....hhhhh....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----------------------------------------------------------------------------------------------RIBOSOMAL_S4             ---------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) -------------------------------------------------------------------------------------------------S4  PDB: D:99-161 UniProt: 99-161                              ------------------------------------------------ PROSITE (5)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf D     2 GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR   209
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        

Chain E from PDB  Type:PROTEIN  Length:151
 aligned with RS5_THET8 | Q5SHQ5 from UniProtKB/Swiss-Prot  Length:162

    Alignment length:151
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154 
          RS5_THET8       5 DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGE   155
               SCOP domains d2vqfe1 E:5-154 30S subunit                                                                                                                           - SCOP domains
               CATH domains 2vqfE01 E:5-68  [code=3.30.160.20, no name defined]             2vqfE02 E:69-143  [code=3.30.230.10, no name defined]                      ------------ CATH domains
               Pfam domains Ribosomal_S5-2vqfE01 E:5-71                                        --------Ribosomal_S5_C-2vqfE02 E:80-153                                           -- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeee.hhhhhhhhhhhhhh..eee...........eeeee..eeeeeee......ee.hhhhhhhhhh.....eeeeeee..hhhhhhhhhhhhhhhh.hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -S5_DSRBD  PDB: E:6-69 UniProt: 6-69                             -------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------RIBOSOMAL_S5  PDB: E:23-55       ---------------------------------------------------------------------------------------------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf E     5 DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKGE   155
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154 

Chain F from PDB  Type:PROTEIN  Length:101
 aligned with RS6_THET8 | Q5SLP8 from UniProtKB/Swiss-Prot  Length:101

    Alignment length:101
                                    10        20        30        40        50        60        70        80        90       100 
          RS6_THET8       1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA   101
               SCOP domains d2vqff1 F:1-101 Ribosomal protein S6                                                                  SCOP domains
               CATH domains 2vqfF00 F:1-101  [code=3.30.70.60, no name defined]                                                   CATH domains
               Pfam domains -Ribosomal_S6-2vqfF01 F:2-93                                                                 -------- Pfam domains
         Sec.struct. author .ee..eeeee....hhhhhhhhhhhhhhhhhh........eeeeeeeeeeee..eeeeeeee...eehhhhhhhhhhhhhh...eeeeee.......ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ----------------------------------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) -------------------------------------------RIBOSOMAL_------------------------------------------------ PROSITE (8)
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
               2vqf F     1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA   101
                                    10        20        30        40        50        60        70        80        90       100 

Chain G from PDB  Type:PROTEIN  Length:155
 aligned with RS7_THET8 | P17291 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
          RS7_THET8       2 ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW   156
               SCOP domains d2vqfg1 G:2-156 Ribosomal protein S7                                                                                                                        SCOP domains
               CATH domains 2vqfG00 G:2-156 Ribosomal Protein S7;                                                                                                                       CATH domains
               Pfam domains Ribosomal_S7-2vqfG01 G:2-149                                                                                                                        ------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------RIBOSOMAL_S7  PDB: G:20-46 -------------------------------------------------------------------------------------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf G     2 ARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW   156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     

Chain H from PDB  Type:PROTEIN  Length:138
 aligned with RS8_THEAQ | A0A0M9AFS9 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
          RS8_THEAQ       1 MLTDPIADMLTRIRNATRVYKESTEVPASRFKEEILKILAREGFIKGYERVEVDGKPYLRIHLKYGPRRQGPDPRPEQVIKHIRRISRPGRRVYVGVKEIPRVRRGLGIAILSTPKGVLTDREARKLGVGGELICEVW   138
               SCOP domains d2vqfh1 H:1-138 Ribosomal protein S8                                                                                                       SCOP domains
               CATH domains --2vqfH01 H:3-80  [code=3.30.1370.30, no name defined]                          2vqfH02 H:81-138  [code=3.30.1490.10, no name defined]     CATH domains
               Pfam domains ---Ribosomal_S8-2vqfH01 H:4-138                                                                                                            Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..eeeeeeeee..eeeeeeee..................eeee........eehhhhh.hhhhhh.eeeeee..eeeehhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------------------------------------------------RIBOSOMAL_S8      ------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
               2vqf H     1 MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW   138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        

Chain H from PDB  Type:PROTEIN  Length:138
 aligned with RS8_THET8 | P0DOY9 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
          RS8_THET8       1 MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW   138
               SCOP domains d2vqfh1 H:1-138 Ribosomal protein S8                                                                                                       SCOP domains
               CATH domains --2vqfH01 H:3-80  [code=3.30.1370.30, no name defined]                          2vqfH02 H:81-138  [code=3.30.1490.10, no name defined]     CATH domains
               Pfam domains ---Ribosomal_S8-2vqfH01 H:4-138                                                                                                            Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh..eeeeeeeee..eeeeeeee..................eeee........eehhhhh.hhhhhh.eeeeee..eeeehhhhhhh...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------RIBOSOMAL_S8      ------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
               2vqf H     1 MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW   138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        

Chain I from PDB  Type:PROTEIN  Length:127
 aligned with RS9_THET2 | P62669 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:127
                                    11        21        31        41        51        61        71        81        91       101       111       121       
          RS9_THET2       2 EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR   128
               SCOP domains d2vqfi1 I:2-128 Ribosomal protein S9                                                                                            SCOP domains
               CATH domains 2vqfI00 I:2-128  [code=3.30.230.10, no name defined]                                                                            CATH domains
               Pfam domains ------Ribosomal_S9-2vqfI01 I:8-128                                                                                              Pfam domains
         Sec.struct. author ...eeeeee..eeeeeeeee....eee...hhhhhh....hhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----------------------------------------------------------------RIBOSOMAL_S9       ------------------------------------------- PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf I     2 EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR   128
                                    11        21        31        41        51        61        71        81        91       101       111       121       

Chain J from PDB  Type:PROTEIN  Length:99
 aligned with RS10_THET8 | Q5SHN7 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:99
                                    12        22        32        42        52        62        72        82        92         
         RS10_THET8       3 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTV   101
               SCOP domains d2vqfj1 J:3-100 Ribosomal protein S10                                                             - SCOP domains
               CATH domains 2vqfJ00 J:3-101  [code=3.30.70.600, no name defined]                                                CATH domains
               Pfam domains -Ribosomal_S10-2vqfJ01 J:4-100                                                                    - Pfam domains
         Sec.struct. author ..eeeeee.......hhhhhhhhh................eeeeee.............eeeeeeeee.........hhhhhh........eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) --------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) --------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ------------------------RIBOSOMAL_S10   ----------------------------------------------------------- PROSITE (7)
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
               2vqf J     3 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTV   101
                                    12        22        32        42        52        62        72        82        92         

Chain K from PDB  Type:PROTEIN  Length:119
 aligned with RS11_THET8 | P80376 from UniProtKB/Swiss-Prot  Length:129

    Alignment length:119
                                    20        30        40        50        60        70        80        90       100       110       120         
         RS11_THET8      11 KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS   129
               SCOP domains d2vqfk1 K:11-126 Ribosomal protein S11                                                                              --- SCOP domains
               CATH domains 2vqfK00 K:11-129  [code=3.30.420.80, no name defined]                                                                   CATH domains
               Pfam domains ------Ribosomal_S11-2vqfK01 K:17-126                                                                                --- Pfam domains
         Sec.struct. author .....eeeeeeeee..eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhhh...eeeeeee...........hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------RIBOSOMAL_S11          ------------ PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf K    11 KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS   129
                                    20        30        40        50        60        70        80        90       100       110       120         

Chain L from PDB  Type:PROTEIN  Length:125
 aligned with RS12_THET8 | Q5SHN3 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
         RS12_THET8       2 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAA   126
               SCOP domains d2vqfl1 L:5-128 70S ribosome functional complex                                                                             - SCOP domains
               CATH domains 2vqfL00 L:5-129 Nucleic acid-binding proteins                                                                                 CATH domains
               Pfam domains Ribosomal_S12-2vqfL01 L:5-126                                                                                             --- Pfam domains
         Sec.struct. author .hhhhhhhh...................eeeee...................eeee...eeee..............eeee............................................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ----------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) -----------------------------------------RIBOSOMA---------------------------------------------------------------------------- PROSITE (7)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf L     5 PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAA   129
                                    14        24        34        44        54        64        74        84        94       104       114       124     

Chain M from PDB  Type:PROTEIN  Length:125
 aligned with RS13_THET8 | P80377 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
         RS13_THET8       2 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK   126
               SCOP domains d2vqfm1 M:2-126 Ribosomal protein S13                                                                                         SCOP domains
               CATH domains -----------------------------------------------------------------------2vqfM02 M:73-126 30s ribosomal protein s13, domain 2   CATH domains
               Pfam domains -Ribosomal_S13-2vqfM01 M:3-109                                                                              ----------------- Pfam domains
         Sec.struct. author ............hhhhhhh.....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhh............hhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --RIBOSOMAL_S13_2  PDB: M:4-112 UniProt: 4-112                                                                 -------------- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------RIBOSOMAL_S13_------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
               2vqf M     2 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK   126
                                    11        21        31        41        51        61        71        81        91       101       111       121     

Chain N from PDB  Type:PROTEIN  Length:60
 aligned with RS14Z_THEAQ | A0A0N0BLP2 from UniProtKB/Swiss-Prot  Length:61

    Alignment length:60
                                    11        21        31        41        51        61
        RS14Z_THEAQ       2 ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRYFGLCRICLRELAHKGQLPGVKKASW    61
               SCOP domains d2vqfn1 N:2-61 Ribosomal protein S14                         SCOP domains
               CATH domains 2vqfN00 N:2-61 30s Ribosomal Protein S14; Chain N            CATH domains
               Pfam domains ----Ribosomal_S14-2vqfN01 N:6-60                           - Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh...................hhhhhhhhhhhh.....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ---------------------RIBOSOMAL_S14          ---------------- PROSITE (4)
                 Transcript ------------------------------------------------------------ Transcript
               2vqf N     2 ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW    61
                                    11        21        31        41        51        61

Chain N from PDB  Type:PROTEIN  Length:60
 aligned with RS14Z_THET8 | P0DOY6 from UniProtKB/Swiss-Prot  Length:61

    Alignment length:60
                                    11        21        31        41        51        61
        RS14Z_THET8       2 ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW    61
               SCOP domains d2vqfn1 N:2-61 Ribosomal protein S14                         SCOP domains
               CATH domains 2vqfN00 N:2-61 30s Ribosomal Protein S14; Chain N            CATH domains
               Pfam domains ----Ribosomal_S14-2vqfN01 N:6-60                           - Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh...................hhhhhhhhhhhh.....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------------------------------ PROSITE (4)
                PROSITE (5) ---------------------RIBOSOMAL_S14          ---------------- PROSITE (5)
                 Transcript ------------------------------------------------------------ Transcript
               2vqf N     2 ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW    61
                                    11        21        31        41        51        61

Chain O from PDB  Type:PROTEIN  Length:88
 aligned with RS15_THET8 | Q5SJ76 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:88
                                    11        21        31        41        51        61        71        81        
         RS15_THET8       2 PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG    89
               SCOP domains d2vqfo1 O:2-89 70S ribosome functional complex                                           SCOP domains
               CATH domains 2vqfO00 O:2-89  [code=1.10.287.10, no name defined]                                      CATH domains
               Pfam domains ----Ribosomal_S15-2vqfO01 O:6-88                                                       - Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ---------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ---------------------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) ---------------------------------------------------------------------------------------- PROSITE (8)
                PROSITE (9) ---------------------------------------------------------------------------------------- PROSITE (9)
               PROSITE (10) -------------------------------------RIBOSOMAL_S15  PDB: O:39-69    -------------------- PROSITE (10)
                 Transcript ---------------------------------------------------------------------------------------- Transcript
               2vqf O     2 PITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG    89
                                    11        21        31        41        51        61        71        81        

Chain P from PDB  Type:PROTEIN  Length:84
 aligned with RS16_THET8 | Q5SJH3 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:84
                                    10        20        30        40        50        60        70        80    
         RS16_THET8       1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEA    84
               SCOP domains d2vqfp1 P:1-83 70S ribosome functional complex                                     - SCOP domains
               CATH domains 2vqfP00 P:1-84  [code=3.30.1320.10, no name defined]                                 CATH domains
               Pfam domains -------Ribosomal_S16-2vqfP01 P:8-67                                ----------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeeeee..........eeeeee.........eeehhhhhhhhhhh..eehhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
               2vqf P     1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEA    84
                                    10        20        30        40        50        60        70        80    

Chain Q from PDB  Type:PROTEIN  Length:104
 aligned with RS17_THETH | P24321 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         RS17_THETH       2 PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYQSLSKRGGKA   105
               SCOP domains d2vqfq1 Q:2-105 Ribosomal protein S17                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------Ribosomal_S17-2vqfQ01 Q:8-76                                         ----------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee..eeeeeeeeeee......eeeeeeeeeee..........eeeeee.........eeeeeeee..hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ----------------------------------------------------RIBOSOMAL_S17--------------------------------------- PROSITE (4)
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
               2vqf Q     2 PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYQSLSKRGGKA   105
                                    11        21        31        41        51        61        71        81        91       101    

Chain R from PDB  Type:PROTEIN  Length:73
 aligned with RS18_THETH | P80382 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:73
                                    25        35        45        55        65        75        85   
         RS18_THETH      16 PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK    88
               SCOP domains d2vqfr1 R:16-88 Ribosomal protein S18                                     SCOP domains
               CATH domains 2vqfR00 R:16-88 30s Ribosomal Protein S18                                 CATH domains
               Pfam domains ------------Ribosomal_S18-2vqfR01 R:28-79                       --------- Pfam domains
         Sec.struct. author .............ee.....hhhhhh..........hhhhhh.hhhhhhhhhhhhhhhhhhh.......ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) ----------------RIBOSOMAL_S18           --------------------------------- PROSITE (8)
                 Transcript ------------------------------------------------------------------------- Transcript
               2vqf R    16 PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLVRK    88
                                    25        35        45        55        65        75        85   

Chain S from PDB  Type:PROTEIN  Length:81
 aligned with RS19_THET8 | Q5SHP2 from UniProtKB/Swiss-Prot  Length:93

    Alignment length:81
                                    11        21        31        41        51        61        71        81 
         RS19_THET8       2 PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRG    82
               SCOP domains d2vqfs1 S:2-81 70S ribosome functional complex                                  - SCOP domains
               CATH domains 2vqfS00 S:2-82 30s Ribosomal Protein S19; Chain A                                 CATH domains
               Pfam domains -Ribosomal_S19-2vqfS01 S:3-82                                                     Pfam domains
         Sec.struct. author ..........hhhhhhhhhhh........eee.......hhhhh..eeeee....eeeee.hhhhh...hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------RIBOSOMAL_S19            ----- PROSITE (3)
                 Transcript --------------------------------------------------------------------------------- Transcript
               2vqf S     2 PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRG    82
                                    11        21        31        41        51        61        71        81 

Chain T from PDB  Type:PROTEIN  Length:99
 aligned with RS20_THET2 | P62661 from UniProtKB/Swiss-Prot  Length:106

    Alignment length:99
                                    17        27        37        47        57        67        77        87        97         
         RS20_THET2       8 RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA   106
               SCOP domains d2vqft1 T:8-106 Ribosomal protein S20                                                               SCOP domains
               CATH domains 2vqfT00 T:8-106  [code=1.20.58.110, no name defined]                                                CATH domains
               Pfam domains Ribosomal_S20p-2vqfT01 T:8-90                                                      ---------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
               2vqf T     8 RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA   106
                                    17        27        37        47        57        67        77        87        97         

Chain U from PDB  Type:PROTEIN  Length:25
 aligned with RSHX_THET8 | Q5SIH3 from UniProtKB/Swiss-Prot  Length:27

    Alignment length:25
                                    11        21     
         RSHX_THET8       2 GKGDRRTRRGKIWRGTYGKYRPRKK    26
               SCOP domains d2vqfu1 U:2-25          - SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
               2vqf U     2 GKGDRRTRRGKIWRGTYGKYRPRKK    26
                                    11        21     

Chain X from PDB  Type:RNA  Length:4
                                      
               2vqf X     1 UUGA     4

Chain Y from PDB  Type:RNA  Length:7
                                         
               2vqf Y    33 UxAAAAC    39
                             |     
                            34-TM2 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (16, 19)

Asymmetric/Biological Unit
(-)
Class: Peptides (792)

(-) CATH Domains  (21, 22)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (22, 22)

Asymmetric/Biological Unit
(-)
Clan: DSRM (45)
(-)
Clan: H2TH (43)
(-)
Clan: KH (43)
(-)
Clan: OB (224)
(-)
Clan: S11_L18p (67)
(-)
Clan: S4 (23)
(-)
Clan: S5 (103)

(-) Gene Ontology  (13, 146)

Asymmetric/Biological Unit(hide GO term definitions)
Chain B   (RS2_THET8 | P80371)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain C   (RS3_THET8 | P80372)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003729    mRNA binding    Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain D   (RS4_THET8 | P80373)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain E   (RS5_THET8 | Q5SHQ5)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain F   (RS6_THET8 | Q5SLP8)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain G   (RS7_THET8 | P17291)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain H   (RS8_THET8 | P0DOY9)

Chain H   (RS8_THEAQ | A0A0M9AFS9)

Chain I   (RS9_THET2 | P62669)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain J   (RS10_THET8 | Q5SHN7)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain K   (RS11_THET8 | P80376)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain L   (RS12_THET8 | Q5SHN3)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain M   (RS13_THET8 | P80377)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain N   (RS14Z_THET8 | P0DOY6)

Chain N   (RS14Z_THEAQ | A0A0N0BLP2)

Chain O   (RS15_THET8 | Q5SJ76)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain P   (RS16_THET8 | Q5SJH3)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain Q   (RS17_THETH | P24321)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain R   (RS18_THETH | P80382)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain S   (RS19_THET8 | Q5SHP2)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
    GO:0015935    small ribosomal subunit    The smaller of the two subunits of a ribosome.

Chain T   (RS20_THET2 | P62661)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Chain U   (RSHX_THET8 | Q5SIH3)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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    VC5  [ RasMol ]  +environment [ RasMol ]
    VC6  [ RasMol ]  +environment [ RasMol ]
    VC7  [ RasMol ]  +environment [ RasMol ]
    VC8  [ RasMol ]  +environment [ RasMol ]
    VC9  [ RasMol ]  +environment [ RasMol ]
    WC1  [ RasMol ]  +environment [ RasMol ]
    WC2  [ RasMol ]  +environment [ RasMol ]
    WC3  [ RasMol ]  +environment [ RasMol ]
    WC4  [ RasMol ]  +environment [ RasMol ]
    WC5  [ RasMol ]  +environment [ RasMol ]
    WC6  [ RasMol ]  +environment [ RasMol ]
    WC7  [ RasMol ]  +environment [ RasMol ]
    WC8  [ RasMol ]  +environment [ RasMol ]
    WC9  [ RasMol ]  +environment [ RasMol ]
    XC1  [ RasMol ]  +environment [ RasMol ]
    XC2  [ RasMol ]  +environment [ RasMol ]
    XC3  [ RasMol ]  +environment [ RasMol ]
    XC4  [ RasMol ]  +environment [ RasMol ]
    XC5  [ RasMol ]  +environment [ RasMol ]
    XC6  [ RasMol ]  +environment [ RasMol ]
    XC7  [ RasMol ]  +environment [ RasMol ]
    XC8  [ RasMol ]  +environment [ RasMol ]
    XC9  [ RasMol ]  +environment [ RasMol ]
    YC1  [ RasMol ]  +environment [ RasMol ]
    YC2  [ RasMol ]  +environment [ RasMol ]
    YC3  [