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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF A RHEUMATOID ARTHRITIS MHC SUSCEPTIBILITY ALLELE, HLA-DR1 (DRB1*0101), COMPLEXED WITH THE IMMUNODOMINANT DETERMINANT OF HUMAN TYPE II COLLAGEN
 
Authors :  R. A. Ivey, E. F. Rosloniec, K. B. Whittington, A. H. Kang, H. W. Park
Date :  22 Jan 06  (Deposition) - 19 Sep 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D,F  (1x)
Keywords :  Rheumatoid Arthritis, Hla-Dr1, Collagen Type Ii, Crystal Structure, Antigen Presentation, Immune System, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. F. Rosloniec, R. A. Ivey, K. B. Whittington, A. H. Kang, H. W. Park
Crystallographic Structure Of A Rheumatoid Arthritis Mhc Susceptibility Allele, Hla-Dr1 (Drb1*0101), Complexed With The Immunodominant Determinant Of Human Type Ii Collagen.
J. Immunol. V. 177 3884 2006
PubMed-ID: 16951351
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN
    ChainsA, C
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CommonFRUIT FLY
    Expression System PlasmidPRMHA-3
    Expression System Taxid7227
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsCHAINS A AND C FORM A CHIMERA WITH CHAINS B AND D, RESPECTIVELY
 
Molecule 2 - HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN
    ChainsB, D
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CommonFRUIT FLY
    Expression System PlasmidPRMHA-3
    Expression System Taxid7227
    Expression System Vector TypePLASMID
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    Other DetailsCHAINS B AND D FORM A CHIMERA WITH CHAINS A AND C, RESPECTIVELY
 
Molecule 3 - COLLAGEN ALPHA-1(II)
    ChainsE, F
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CommonFRUIT FLY
    Expression System PlasmidPRMHA-3
    Expression System Taxid7227
    Expression System Vector TypePLASMID
    GeneCOL2A1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB  E 
Biological Unit 2 (1x)  CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FSE)

(-) Sites  (0, 0)

(no "Site" information available for 2FSE)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:107 -A:163
2B:15 -B:79
3B:117 -B:173
4C:107 -C:163
5D:15 -D:79
6D:117 -D:173

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:15 -Pro A:16
2Ser A:113 -Pro A:114
3Tyr B:123 -Pro B:124
4Asn C:15 -Pro C:16
5Ser C:113 -Pro C:114
6Tyr D:123 -Pro D:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (25, 48)

Asymmetric Unit (25, 48)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_033379R33K2B11_HUMANPolymorphism34716432DR4K
02UniProtVAR_033380R33Q2B11_HUMANPolymorphism34716432DR4Q
03UniProtVAR_016740Q39E2B11_HUMANPolymorphism  ---B/DQ10E
04UniProtVAR_033381S66Y2B11_HUMANPolymorphism16822820B/DS37Y
05UniProtVAR_016741G74R2B11_HUMANPolymorphism  ---B/DG45R
06UniProtVAR_033382Y76F2B11_HUMANPolymorphism1060346B/DY47F
07UniProtVAR_033383Y89S2B11_HUMANPolymorphism36074728B/DY60S
08UniProtVAR_016710L96I2B11_HUMANPolymorphism  ---B/DL67I
09UniProtVAR_016711Q99D2B11_HUMANPolymorphism  ---B/DQ70D
10UniProtVAR_033384Q99E2B11_HUMANPolymorphism17881965B/DQ70E
11UniProtVAR_033385Q99H2B11_HUMANPolymorphism17879599B/DQ70H
12UniProtVAR_016742R100A2B11_HUMANPolymorphism  ---B/DR71A
13UniProtVAR_016712R100E2B11_HUMANPolymorphism  ---B/DR71E
14UniProtVAR_033386A102G2B11_HUMANPolymorphism17878857B/DA73G
15UniProtVAR_033387A103E2B11_HUMANPolymorphism16822805B/DA74E
16UniProtVAR_016713T106N2B11_HUMANPolymorphism16822752B/DT77N
17UniProtVAR_033388Y107H2B11_HUMANPolymorphism16822512B/DY78H
18UniProtVAR_016714V114A2B11_HUMANPolymorphism17424145B/DV85A
19UniProtVAR_016715G115V2B11_HUMANPolymorphism2230810B/DG86V
20UniProtVAR_033389G164D2B11_HUMANPolymorphism1059633B/DG135D
21UniProtVAR_033390A169T2B11_HUMANPolymorphism2308768B/DT140T
22UniProtVAR_033391V171M2B11_HUMANPolymorphism701829B/DI142M
23UniProtVAR_033392Q178H2B11_HUMANPolymorphism701830B/DR149H
24UniProtVAR_033393R195Q2B11_HUMANPolymorphism3205588B/DQ166Q
25UniProtVAR_033394T210I2B11_HUMANPolymorphism17423930B/DT181I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (23, 23)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
03UniProtVAR_016740Q39E2B11_HUMANPolymorphism  ---BQ10E
04UniProtVAR_033381S66Y2B11_HUMANPolymorphism16822820BS37Y
05UniProtVAR_016741G74R2B11_HUMANPolymorphism  ---BG45R
06UniProtVAR_033382Y76F2B11_HUMANPolymorphism1060346BY47F
07UniProtVAR_033383Y89S2B11_HUMANPolymorphism36074728BY60S
08UniProtVAR_016710L96I2B11_HUMANPolymorphism  ---BL67I
09UniProtVAR_016711Q99D2B11_HUMANPolymorphism  ---BQ70D
10UniProtVAR_033384Q99E2B11_HUMANPolymorphism17881965BQ70E
11UniProtVAR_033385Q99H2B11_HUMANPolymorphism17879599BQ70H
12UniProtVAR_016742R100A2B11_HUMANPolymorphism  ---BR71A
13UniProtVAR_016712R100E2B11_HUMANPolymorphism  ---BR71E
14UniProtVAR_033386A102G2B11_HUMANPolymorphism17878857BA73G
15UniProtVAR_033387A103E2B11_HUMANPolymorphism16822805BA74E
16UniProtVAR_016713T106N2B11_HUMANPolymorphism16822752BT77N
17UniProtVAR_033388Y107H2B11_HUMANPolymorphism16822512BY78H
18UniProtVAR_016714V114A2B11_HUMANPolymorphism17424145BV85A
19UniProtVAR_016715G115V2B11_HUMANPolymorphism2230810BG86V
20UniProtVAR_033389G164D2B11_HUMANPolymorphism1059633BG135D
21UniProtVAR_033390A169T2B11_HUMANPolymorphism2308768BT140T
22UniProtVAR_033391V171M2B11_HUMANPolymorphism701829BI142M
23UniProtVAR_033392Q178H2B11_HUMANPolymorphism701830BR149H
24UniProtVAR_033393R195Q2B11_HUMANPolymorphism3205588BQ166Q
25UniProtVAR_033394T210I2B11_HUMANPolymorphism17423930BT181I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (25, 25)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_033379R33K2B11_HUMANPolymorphism34716432DR4K
02UniProtVAR_033380R33Q2B11_HUMANPolymorphism34716432DR4Q
03UniProtVAR_016740Q39E2B11_HUMANPolymorphism  ---DQ10E
04UniProtVAR_033381S66Y2B11_HUMANPolymorphism16822820DS37Y
05UniProtVAR_016741G74R2B11_HUMANPolymorphism  ---DG45R
06UniProtVAR_033382Y76F2B11_HUMANPolymorphism1060346DY47F
07UniProtVAR_033383Y89S2B11_HUMANPolymorphism36074728DY60S
08UniProtVAR_016710L96I2B11_HUMANPolymorphism  ---DL67I
09UniProtVAR_016711Q99D2B11_HUMANPolymorphism  ---DQ70D
10UniProtVAR_033384Q99E2B11_HUMANPolymorphism17881965DQ70E
11UniProtVAR_033385Q99H2B11_HUMANPolymorphism17879599DQ70H
12UniProtVAR_016742R100A2B11_HUMANPolymorphism  ---DR71A
13UniProtVAR_016712R100E2B11_HUMANPolymorphism  ---DR71E
14UniProtVAR_033386A102G2B11_HUMANPolymorphism17878857DA73G
15UniProtVAR_033387A103E2B11_HUMANPolymorphism16822805DA74E
16UniProtVAR_016713T106N2B11_HUMANPolymorphism16822752DT77N
17UniProtVAR_033388Y107H2B11_HUMANPolymorphism16822512DY78H
18UniProtVAR_016714V114A2B11_HUMANPolymorphism17424145DV85A
19UniProtVAR_016715G115V2B11_HUMANPolymorphism2230810DG86V
20UniProtVAR_033389G164D2B11_HUMANPolymorphism1059633DG135D
21UniProtVAR_033390A169T2B11_HUMANPolymorphism2308768DT140T
22UniProtVAR_033391V171M2B11_HUMANPolymorphism701829DI142M
23UniProtVAR_033392Q178H2B11_HUMANPolymorphism701830DR149H
24UniProtVAR_033393R195Q2B11_HUMANPolymorphism3205588DQ166Q
25UniProtVAR_033394T210I2B11_HUMANPolymorphism17423930DT181I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.DRA_HUMAN186-192
 
  2A:161-167
C:161-167
2B11_HUMAN200-206
 
  2B:171-177
D:171-177
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.DRA_HUMAN186-192
 
  1A:161-167
-
2B11_HUMAN200-206
 
  1B:171-177
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1IG_MHCPS00290 Immunoglobulins and major histocompatibility complex proteins signature.DRA_HUMAN186-192
 
  1-
C:161-167
2B11_HUMAN200-206
 
  1-
D:171-177

(-) Exons   (9, 18)

Asymmetric Unit (9, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3ENST000003600043ENSE00001930619chr6:32557625-325574202062B11_HUMAN1-34342B:5-5
D:4-5
1
2
1.4ENST000003600044ENSE00001731226chr6:32552155-325518862702B11_HUMAN34-124912B:5-95
D:5-95
91
91
1.5bENST000003600045bENSE00001801024chr6:32549615-325493342822B11_HUMAN124-218952B:95-189
D:95-189
95
95
1.6ENST000003600046ENSE00001717727chr6:32548633-325485231112B11_HUMAN218-255382B:189-190
D:189-189
2
1
1.7ENST000003600047ENSE00001773376chr6:32548047-32548024242B11_HUMAN255-26390--
1.8ENST000003600048ENSE00001954617chr6:32546881-325465463362B11_HUMAN263-26640--

2.1bENST000003805181bENSE00002177316chr12:48398269-48398020250CO2A1_HUMAN1-29290--
2.4aENST000003805184aENSE00001661130chr12:48393908-48393702207CO2A1_HUMAN29-98700--
2.5bENST000003805185bENSE00001672257chr12:48392214-4839219817CO2A1_HUMAN98-10360--
2.6ENST000003805186ENSE00001650589chr12:48391984-4839195233CO2A1_HUMAN104-114110--
2.7ENST000003805187ENSE00001613103chr12:48391847-4839181533CO2A1_HUMAN115-125110--
2.8ENST000003805188ENSE00001683942chr12:48391707-4839165454CO2A1_HUMAN126-143180--
2.9bENST000003805189bENSE00001713001chr12:48391490-48391389102CO2A1_HUMAN144-177340--
2.10ENST0000038051810ENSE00001749051chr12:48390408-4839033178CO2A1_HUMAN178-203260--
2.11ENST0000038051811ENSE00001805624chr12:48389702-4838965845CO2A1_HUMAN204-218150--
2.12ENST0000038051812ENSE00001641870chr12:48389546-4838949354CO2A1_HUMAN219-236180--
2.13ENST0000038051813ENSE00001626662chr12:48389091-4838903854CO2A1_HUMAN237-254180--
2.14ENST0000038051814ENSE00001716055chr12:48388260-4838820754CO2A1_HUMAN255-272180--
2.15ENST0000038051815ENSE00001598832chr12:48387830-4838777754CO2A1_HUMAN273-290180--
2.16ENST0000038051816ENSE00001606284chr12:48387645-4838759254CO2A1_HUMAN291-308180--
2.17ENST0000038051817ENSE00001752481chr12:48387285-4838724145CO2A1_HUMAN309-323150--
2.18ENST0000038051818ENSE00001729865chr12:48386714-4838666154CO2A1_HUMAN324-341180--
2.19ENST0000038051819ENSE00001774985chr12:48383588-4838354445CO2A1_HUMAN342-356150--
2.20ENST0000038051820ENSE00001763552chr12:48383064-4838301154CO2A1_HUMAN357-374180--
2.22ENST0000038051822ENSE00001668796chr12:48381492-4838139499CO2A1_HUMAN375-407330--
2.23ENST0000038051823ENSE00001662817chr12:48381096-4838105245CO2A1_HUMAN408-422150--
2.24ENST0000038051824ENSE00001723909chr12:48380959-4838086199CO2A1_HUMAN423-455330--
2.25ENST0000038051825ENSE00001692548chr12:48380671-4838061854CO2A1_HUMAN456-473182E:999-1011
F:1999-2011
13
13
2.26ENST0000038051826ENSE00001740201chr12:48380226-48380119108CO2A1_HUMAN474-509362E:1012-1012
F:2012-2012
1
1
2.27ENST0000038051827ENSE00001767237chr12:48379748-4837969554CO2A1_HUMAN510-527180--
2.28ENST0000038051828ENSE00001599090chr12:48379609-4837951199CO2A1_HUMAN528-560330--
2.29ENST0000038051829ENSE00001757919chr12:48379370-4837931754CO2A1_HUMAN561-578180--
2.30ENST0000038051830ENSE00001716482chr12:48378876-4837877899CO2A1_HUMAN579-611330--
2.31ENST0000038051831ENSE00001622932chr12:48378382-4837832954CO2A1_HUMAN612-629180--
2.32ENST0000038051832ENSE00001644701chr12:48377923-4837787054CO2A1_HUMAN630-647180--
2.33bENST0000038051833bENSE00001796614chr12:48377519-4837746654CO2A1_HUMAN648-665180--
2.34ENST0000038051834ENSE00001710088chr12:48377221-4837716854CO2A1_HUMAN666-683180--
2.35ENST0000038051835ENSE00001621432chr12:48376920-4837687645CO2A1_HUMAN684-698150--
2.36ENST0000038051836ENSE00001633545chr12:48376729-4837663199CO2A1_HUMAN699-731330--
2.37ENST0000038051837ENSE00001803753chr12:48376392-48376285108CO2A1_HUMAN732-767360--
2.38aENST0000038051838aENSE00001681804chr12:48375943-4837589054CO2A1_HUMAN768-785180--
2.39ENST0000038051839ENSE00001607745chr12:48375612-4837555954CO2A1_HUMAN786-803180--
2.40ENST0000038051840ENSE00001635649chr12:48375179-4837512654CO2A1_HUMAN804-821180--
2.41ENST0000038051841ENSE00001669107chr12:48374751-4837469854CO2A1_HUMAN822-839180--
2.42ENST0000038051842ENSE00001772729chr12:48374444-48374337108CO2A1_HUMAN840-875360--
2.43ENST0000038051843ENSE00001591943chr12:48373845-4837379254CO2A1_HUMAN876-893180--
2.44ENST0000038051844ENSE00001766798chr12:48373347-4837329454CO2A1_HUMAN894-911180--
2.45ENST0000038051845ENSE00001647246chr12:48372541-48372380162CO2A1_HUMAN912-965540--
2.46ENST0000038051846ENSE00001632799chr12:48372181-48372074108CO2A1_HUMAN966-1001360--
2.47ENST0000038051847ENSE00001687971chr12:48371900-48371793108CO2A1_HUMAN1002-1037360--
2.48ENST0000038051848ENSE00001745083chr12:48371436-4837138354CO2A1_HUMAN1038-1055180--
2.49ENST0000038051849ENSE00001771216chr12:48371210-48371103108CO2A1_HUMAN1056-1091360--
2.50ENST0000038051850ENSE00001800326chr12:48370938-4837088554CO2A1_HUMAN1092-1109180--
2.51ENST0000038051851ENSE00001628024chr12:48370702-48370595108CO2A1_HUMAN1110-1145360--
2.52ENST0000038051852ENSE00001632016chr12:48370350-4837029754CO2A1_HUMAN1146-1163180--
2.53ENST0000038051853ENSE00001755795chr12:48369853-48369746108CO2A1_HUMAN1164-1199360--
2.54ENST0000038051854ENSE00001632936chr12:48369388-48369100289CO2A1_HUMAN1200-1296970--
2.55ENST0000038051855ENSE00001165399chr12:48368645-48368458188CO2A1_HUMAN1296-1358630--
2.56ENST0000038051856ENSE00001005948chr12:48368114-48367872243CO2A1_HUMAN1359-1439810--
2.57bENST0000038051857bENSE00001521209chr12:48367336-48366748589CO2A1_HUMAN1440-1487480--

3.6aENST000003832596aENSE00001839042HSCHR6_MHC_QBL:32365090-32365280191DRA_HUMAN1-28280--
3.7bENST000003832597bENSE00001719010HSCHR6_MHC_QBL:32367694-32367939246DRA_HUMAN28-110832A:4-85
C:4-85
82
82
3.8cENST000003832598cENSE00001737588HSCHR6_MHC_QBL:32368431-32368712282DRA_HUMAN110-204952A:85-179
C:85-179
95
95
3.9aENST000003832599aENSE00001770912HSCHR6_MHC_QBL:32369002-32369167166DRA_HUMAN204-254512A:179-181
C:179-180
3
2
3.10bENST0000038325910bENSE00001925700HSCHR6_MHC_QBL:32369906-32370300395DRA_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:178
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:178
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        
           DRA_HUMAN     29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD  206
               SCOP domains d2fsea2 A:4-81 automated matches                                              d2fsea1 A:82-181 automated matches                                                                   SCOP domains
               CATH domains 2fseA01 A:4-81                                                                2fseA02 A:82-181 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeee..eeeeeee....eeee.hhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...........eeeeee.........eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeee.......eeeeee.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: A:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3.9 Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: A:85-179 UniProt: 110-204                                                      -- Transcript 3 (2)
                2fse A    4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFE  181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173        

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with 2B11_HUMAN | P04229 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:186
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213      
          2B11_HUMAN     34 PRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA  219
               SCOP domains d2fseb2 B:5-92 automated matches                                                        d2fseb1 B:93-190 automated matches                                                                 SCOP domains
               CATH domains 2fseB01 B:5-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1     2fseB02 B:93-190 Immunoglobulins                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....eeeeeeeee....eeeeee.....eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.........eeeeeeeeee.....eeeeee..ee....eeeeeeee.....eeeeeeeee......eeeeeee.......eeeeee. Sec.struct. author
             SAPs(SNPs) (1) -----E--------------------------Y-------R-F------------S------I--DA-GE--NH------AV------------------------------------------------D----T-M------H----------------Q--------------I--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------EE----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -----------------------------------------------------------------H------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
           Transcript 1 (1) 1-----------------------------------------------------------------------------------------Exon 1.5b  PDB: B:95-189 UniProt: 124-218                                                      - Transcript 1 (1)
           Transcript 1 (2) Exon 1.4  PDB: B:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------1. Transcript 1 (2)
                2fse B    5 PRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPTVTVYPTKTQPLQHHNLLVCSVSDFYPGNIEVRWFRNGKEEETGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWKA  190
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184      

Chain C from PDB  Type:PROTEIN  Length:177
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:177
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       
           DRA_HUMAN     29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEF  205
               SCOP domains d2fsec2 C:4-81 automated matches                                              d2fsec1 C:82-180 automated matches                                                                  SCOP domains
               CATH domains 2fseC01 C:4-81                                                                2fseC02 C:82-180 Immunoglobulins                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...eeeeeeee..eeeeeee....eeee.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..........eeeeee.........eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeee.......eeeeee.......eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: C:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3. Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: C:85-179 UniProt: 110-204                                                      - Transcript 3 (2)
                2fse C    4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEF  180
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       

Chain D from PDB  Type:PROTEIN  Length:186
 aligned with 2B11_HUMAN | P04229 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:186
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
          2B11_HUMAN     33 RPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR  218
               SCOP domains d2fsed2 D:4-92 automated matches                                                         d2fsed1 D:93-189 automated matches                                                                SCOP domains
               CATH domains 2fseD01 D:4-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1      2fseD02 D:93-189 Immunoglobulins                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeeeee....eeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee..........eeeeeeeeee.....eeeeee..ee.....eeeeeee.....eeeeeeeee.......eeeeee.......eeeee. Sec.struct. author
             SAPs(SNPs) (1) K-----E--------------------------Y-------R-F------------S------I--DA-GE--NH------AV------------------------------------------------D----T-M------H----------------Q--------------I-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) Q-----------------------------------------------------------------EE---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ------------------------------------------------------------------H----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
           Transcript 1 (1) 1.-----------------------------------------------------------------------------------------Exon 1.5b  PDB: D:95-189 UniProt: 124-218                                                       Transcript 1 (1)
           Transcript 1 (2) -Exon 1.4  PDB: D:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------1 Transcript 1 (2)
                2fse D    4 RPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPTVTVYPTKTQPLQHHNLLVCSVSDFYPGNIEVRWFRNGKEEETGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWK  189
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183      

Chain E from PDB  Type:PROTEIN  Length:14
 aligned with CO2A1_HUMAN | P02458 from UniProtKB/Swiss-Prot  Length:1487

    Alignment length:14
                                   470    
         CO2A1_HUMAN    461 AGFKGEQGPKGEPG  474
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
               Transcript 2 Exon 2.25    2 Transcript 2
                2fse E  999 AGFKGEQGPKGEPG 1012
                                  1008    

Chain F from PDB  Type:PROTEIN  Length:14
 aligned with CO2A1_HUMAN | P02458 from UniProtKB/Swiss-Prot  Length:1487

    Alignment length:14
                                   470    
         CO2A1_HUMAN    461 AGFKGEQGPKGEPG  474
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .............. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
               Transcript 2 Exon 2.25    2 Transcript 2
                2fse F 1999 AGFKGEQGPKGEPG 2012
                                  2008    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FSE)

(-) Gene Ontology  (95, 126)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (DRA_HUMAN | P01903)
molecular function
    GO:0023026    MHC class II protein complex binding    Interacting selectively and non-covalently with the class II major histocompatibility complex.
    GO:0032395    MHC class II receptor activity    Combining with an MHC class II protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0019886    antigen processing and presentation of exogenous peptide antigen via MHC class II    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
    GO:0002504    antigen processing and presentation of peptide or polysaccharide antigen via MHC class II    The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.
    GO:0050890    cognition    The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0060333    interferon-gamma-mediated signaling pathway    A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
    GO:0002503    peptide antigen assembly with MHC class II protein complex    The binding of a peptide to the antigen binding groove of an MHC class II protein complex.
    GO:0002506    polysaccharide assembly with MHC class II protein complex    The binding of a polysaccharide to the antigen binding groove of an MHC class II protein complex.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0012507    ER to Golgi transport vesicle membrane    The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0042613    MHC class II protein complex    A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0030669    clathrin-coated endocytic vesicle membrane    The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
    GO:0030666    endocytic vesicle membrane    The lipid bilayer surrounding an endocytic vesicle.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0071556    integral component of lumenal side of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0031902    late endosome membrane    The lipid bilayer surrounding a late endosome.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0032588    trans-Golgi network membrane    The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
    GO:0030658    transport vesicle membrane    The lipid bilayer surrounding a transport vesicle.

Chain B,D   (2B11_HUMAN | P04229)
molecular function
    GO:0023026    MHC class II protein complex binding    Interacting selectively and non-covalently with the class II major histocompatibility complex.
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0042088    T-helper 1 type immune response    An immune response which is associated with resistance to intracellular bacteria, fungi, and protozoa, and pathological conditions such as arthritis, and which is typically orchestrated by the production of particular cytokines by T-helper 1 cells, most notably interferon-gamma, IL-2, and lymphotoxin.
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0019886    antigen processing and presentation of exogenous peptide antigen via MHC class II    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
    GO:0002504    antigen processing and presentation of peptide or polysaccharide antigen via MHC class II    The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.
    GO:0016045    detection of bacterium    The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
    GO:0002455    humoral immune response mediated by circulating immunoglobulin    An immune response dependent upon secreted immunoglobulin. An example of this process is found in Mus musculus.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0002381    immunoglobulin production involved in immunoglobulin mediated immune response    The appearance of immunoglobulin due to biosynthesis or secretion following a cellular stimulus during an immune response, resulting in an increase in its intracellular or extracellular levels.
    GO:0002437    inflammatory response to antigenic stimulus    An inflammatory response to an antigenic stimulus, which can be include any number of T cell or B cell epitopes.
    GO:0060333    interferon-gamma-mediated signaling pathway    A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
    GO:0042130    negative regulation of T cell proliferation    Any process that stops, prevents or reduces the rate or extent of T cell proliferation.
    GO:0032689    negative regulation of interferon-gamma production    Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon.
    GO:0035774    positive regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that increases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:2001179    regulation of interleukin-10 secretion    Any process that modulates the frequency, rate or extent of interleukin-10 secretion.
    GO:0032673    regulation of interleukin-4 production    Any process that modulates the frequency, rate, or extent of interleukin-4 production.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0012507    ER to Golgi transport vesicle membrane    The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0042613    MHC class II protein complex    A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen.
    GO:0030669    clathrin-coated endocytic vesicle membrane    The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
    GO:0030666    endocytic vesicle membrane    The lipid bilayer surrounding an endocytic vesicle.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0071556    integral component of lumenal side of endoplasmic reticulum membrane    The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0031902    late endosome membrane    The lipid bilayer surrounding a late endosome.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0032588    trans-Golgi network membrane    The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
    GO:0030658    transport vesicle membrane    The lipid bilayer surrounding a transport vesicle.

Chain E,F   (CO2A1_HUMAN | P02458)
molecular function
    GO:0005201    extracellular matrix structural constituent    The action of a molecule that contributes to the structural integrity of the extracellular matrix.
    GO:0030020    extracellular matrix structural constituent conferring tensile strength    A constituent of the extracellular matrix that enables the matrix to resist longitudinal stress.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0048407    platelet-derived growth factor binding    Interacting selectively and non-covalently with platelet-derived growth factor.
biological process
    GO:0060348    bone development    The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components.
    GO:0001502    cartilage condensation    The condensation of mesenchymal cells that have been committed to differentiate into chondrocytes.
    GO:0051216    cartilage development    The process whose specific outcome is the progression of a cartilage element over time, from its formation to the mature structure. Cartilage elements are skeletal elements that consist of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate.
    GO:0060351    cartilage development involved in endochondral bone morphogenesis    The process whose specific outcome is the progression of the cartilage that will provide a scaffold for mineralization of endochondral bones.
    GO:0071773    cellular response to BMP stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bone morphogenetic protein (BMP) stimulus.
    GO:0007417    central nervous system development    The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
    GO:0002062    chondrocyte differentiation    The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte. A chondrocyte is a polymorphic cell that forms cartilage.
    GO:0030574    collagen catabolic process    The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.
    GO:0030199    collagen fibril organization    Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
    GO:0060272    embryonic skeletal joint morphogenesis    The process in which the anatomical structures of skeletal joints are generated and organized during the embryonic phase. A skeletal joint is the connecting structure between the bones of the skeleton.
    GO:0001958    endochondral ossification    Replacement ossification wherein bone tissue replaces cartilage.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0003007    heart morphogenesis    The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0048839    inner ear development    The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
    GO:0042472    inner ear morphogenesis    The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.
    GO:0060174    limb bud formation    The process pertaining to the initial formation of a limb bud from unspecified parts. This process begins with the formation of a local condensation of mesenchyme cells within the prospective limb field, and ends when a limb bud is recognizable.
    GO:0035108    limb morphogenesis    The process in which the anatomical structures of a limb are generated and organized. A limb is a paired appendage of a tetrapod used for locomotion or grasping.
    GO:2001240    negative regulation of extrinsic apoptotic signaling pathway in absence of ligand    Any process that stops, prevents or reduces the frequency, rate or extent of extrinsic apoptotic signaling pathway in absence of ligand.
    GO:0030903    notochord development    The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column.
    GO:0001503    ossification    The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
    GO:0071599    otic vesicle development    The process whose specific outcome is the progression of the otic vesicle over time, from its formation to the mature structure. The otic vesicle is a transient embryonic structure formed during development of the vertebrate inner ear.
    GO:0060021    palate development    The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities.
    GO:0006029    proteoglycan metabolic process    The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0007605    sensory perception of sound    The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
    GO:0001501    skeletal system development    The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
    GO:0048705    skeletal system morphogenesis    The process in which the anatomical structures of the skeleton are generated and organized.
    GO:0001894    tissue homeostasis    A homeostatic process involved in the maintenance of an internal steady state within a defined tissue of an organism, including control of cellular proliferation and death and control of metabolic function.
    GO:0007601    visual perception    The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005585    collagen type II trimer    A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        2B11_HUMAN | P042291aqd 1bx2 1dlh 1fyt 1hxy 1jwm 1jws 1jwu 1kg0 1klg 1klu 1lo5 1pyw 1r5i 1seb 1sje 1sjh 1t5w 1t5x 2g9h 2iam 2ian 2icw 2ipk 2oje 2xn9 3l6f 3pdo 3pgc 3pgd 3qxa 3qxd 3s4s 3s5l 4aen 4ah2 4c56 4e41 4fqx 4gbx 4i5b 4ov5 4x5w 4x5x 5v4n
        CO2A1_HUMAN | P024581u5m 2seb 5nir
        DRA_HUMAN | P019031a6a 1aqd 1bx2 1d5m 1d5x 1d5z 1d6e 1dlh 1fv1 1fyt 1h15 1hqr 1hxy 1j8h 1jwm 1jws 1jwu 1kg0 1klg 1klu 1lo5 1pyw 1r5i 1seb 1sje 1sjh 1t5w 1t5x 1ymm 1zgl 2g9h 2iam 2ian 2icw 2ipk 2oje 2q6w 2seb 2wbj 2xn9 3c5j 3l6f 3o6f 3pdo 3pgc 3pgd 3qxa 3qxd 3s4s 3s5l 3t0e 4aen 4ah2 4c56 4e41 4fqx 4gbx 4h1l 4h25 4h26 4i5b 4is6 4mcy 4mcz 4md0 4md4 4md5 4mdi 4mdj 4ov5 4x5w 4x5x 4y19 4y1a 5jlz 5lax 5v4m 5v4n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2FSE)