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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTALLOGRAPHIC STRUCTURE OF A RHEUMATOID ARTHRITIS MHC SUSCEPTIBILITY ALLELE, HLA-DR1 (DRB1*0101), COMPLEXED WITH IMMUNODOMINANT DETERMINANT OF HUMAN TYPE II COLLAGEN
Keywords RHEUMATOID ARTHRITIS, HLA-DR1, COLLAGEN TYPE II, ANTIGEN PRESENTATION, IMMUNE SYSTEM, STRUCTURAL PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2FSE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 178 1465 0
2  Protein    B 186 1534 0
3  Protein    C 177 1455 0
4  Protein    D 186 1539 0
5  Protein   COLLAGEN ALPHA-1(II)  E 14 96 0
6  Protein   COLLAGEN ALPHA-1(II)  F 14 96 0
7 Water     31 0 31
total       786 6185 31

Proteins
Unit 1 GLU4 HIS5 VAL6 ILE7 ILE8 GLN9 ALA10 GLU11 PHE12 TYR13 LEU14 ASN15 PRO16 ASP17 GLN18 SER19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 MET36 ALA37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 GLY49 ARG50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASP66 LYS67 ALA68 ASN69 LEU70 GLU71 ILE72 MET73 THR74 LYS75 ARG76 SER77 ASN78 TYR79 THR80 PRO81 ILE82 THR83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180 GLU181
Unit 2 PRO5 ARG6 PHE7 LEU8 TRP9 GLN10 LEU11 LYS12 PHE13 GLU14 CYS15 HIS16 PHE17 PHE18 ASN19 GLY20 THR21 GLU22 ARG23 VAL24 ARG25 LEU26 LEU27 GLU28 ARG29 CYS30 ILE31 TYR32 ASN33 GLN34 GLU35 GLU36 SER37 VAL38 ARG39 PHE40 ASP41 SER42 ASP43 VAL44 GLY45 GLU46 TYR47 ARG48 ALA49 VAL50 THR51 GLU52 LEU53 GLY54 ARG55 PRO56 ASP57 ALA58 GLU59 TYR60 TRP61 ASN62 SER63 GLN64 LYS65 ASP66 LEU67 LEU68 GLU69 GLN70 ARG71 ARG72 ALA73 ALA74 VAL75 ASP76 THR77 TYR78 CYS79 ARG80 HIS81 ASN82 TYR83 GLY84 VAL85 GLY86 GLU87 SER88 PHE89 THR90 VAL91 GLN92 ARG93 ARG94 VAL95 GLU96 PRO97 THR98 VAL99 THR100 VAL101 TYR102 PRO103 THR104 LYS105 THR106 GLN107 PRO108 LEU109 GLN110 HIS111 HIS112 ASN113 LEU114 LEU115 VAL116 CYS117 SER118 VAL119 SER120 ASP121 PHE122 TYR123 PRO124 GLY125 ASN126 ILE127 GLU128 VAL129 ARG130 TRP131 PHE132 ARG133 ASN134 GLY135 LYS136 GLU137 GLU138 GLU139 THR140 GLY141 ILE142 VAL143 SER144 THR145 GLY146 LEU147 VAL148 ARG149 ASN150 GLY151 ASP152 TRP153 THR154 PHE155 GLN156 THR157 LEU158 VAL159 MET160 LEU161 GLU162 THR163 VAL164 PRO165 GLN166 SER167 GLY168 GLU169 VAL170 TYR171 THR172 CYS173 GLN174 VAL175 GLU176 HIS177 PRO178 SER179 LEU180 THR181 ASP182 PRO183 VAL184 THR185 VAL186 GLU187 TRP188 LYS189 ALA190
Unit 3 GLU4 HIS5 VAL6 ILE7 ILE8 GLN9 ALA10 GLU11 PHE12 TYR13 LEU14 ASN15 PRO16 ASP17 GLN18 SER19 GLY20 GLU21 PHE22 MET23 PHE24 ASP25 PHE26 ASP27 GLY28 ASP29 GLU30 ILE31 PHE32 HIS33 VAL34 ASP35 MET36 ALA37 LYS38 LYS39 GLU40 THR41 VAL42 TRP43 ARG44 LEU45 GLU46 GLU47 PHE48 GLY49 ARG50 PHE51 ALA52 SER53 PHE54 GLU55 ALA56 GLN57 GLY58 ALA59 LEU60 ALA61 ASN62 ILE63 ALA64 VAL65 ASP66 LYS67 ALA68 ASN69 LEU70 GLU71 ILE72 MET73 THR74 LYS75 ARG76 SER77 ASN78 TYR79 THR80 PRO81 ILE82 THR83 ASN84 VAL85 ALA86 PRO87 GLU88 VAL89 THR90 VAL91 LEU92 SER93 ARG94 SER95 PRO96 VAL97 ASN98 LEU99 GLY100 GLU101 PRO102 ASN103 ILE104 LEU105 ILE106 CYS107 PHE108 ILE109 ASP110 LYS111 PHE112 SER113 PRO114 PRO115 VAL116 VAL117 ASN118 VAL119 THR120 TRP121 LEU122 ARG123 ASN124 GLY125 ARG126 PRO127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 VAL136 PHE137 LEU138 PRO139 ARG140 ASP141 ASP142 HIS143 LEU144 PHE145 ARG146 LYS147 PHE148 HIS149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 THR157 ASP158 ASP159 PHE160 TYR161 ASP162 CYS163 GLU164 VAL165 ASP166 HIS167 TRP168 GLY169 LEU170 GLU171 GLU172 PRO173 LEU174 ARG175 LYS176 HIS177 TRP178 GLU179 PHE180
Unit 4 ARG4 PRO5 ARG6 PHE7 LEU8 TRP9 GLN10 LEU11 LYS12 PHE13 GLU14 CYS15 HIS16 PHE17 PHE18 ASN19 GLY20 THR21 GLU22 ARG23 VAL24 ARG25 LEU26 LEU27 GLU28 ARG29 CYS30 ILE31 TYR32 ASN33 GLN34 GLU35 GLU36 SER37 VAL38 ARG39 PHE40 ASP41 SER42 ASP43 VAL44 GLY45 GLU46 TYR47 ARG48 ALA49 VAL50 THR51 GLU52 LEU53 GLY54 ARG55 PRO56 ASP57 ALA58 GLU59 TYR60 TRP61 ASN62 SER63 GLN64 LYS65 ASP66 LEU67 LEU68 GLU69 GLN70 ARG71 ARG72 ALA73 ALA74 VAL75 ASP76 THR77 TYR78 CYS79 ARG80 HIS81 ASN82 TYR83 GLY84 VAL85 GLY86 GLU87 SER88 PHE89 THR90 VAL91 GLN92 ARG93 ARG94 VAL95 GLU96 PRO97 THR98 VAL99 THR100 VAL101 TYR102 PRO103 THR104 LYS105 THR106 GLN107 PRO108 LEU109 GLN110 HIS111 HIS112 ASN113 LEU114 LEU115 VAL116 CYS117 SER118 VAL119 SER120 ASP121 PHE122 TYR123 PRO124 GLY125 ASN126 ILE127 GLU128 VAL129 ARG130 TRP131 PHE132 ARG133 ASN134 GLY135 LYS136 GLU137 GLU138 GLU139 THR140 GLY141 ILE142 VAL143 SER144 THR145 GLY146 LEU147 VAL148 ARG149 ASN150 GLY151 ASP152 TRP153 THR154 PHE155 GLN156 THR157 LEU158 VAL159 MET160 LEU161 GLU162 THR163 VAL164 PRO165 GLN166 SER167 GLY168 GLU169 VAL170 TYR171 THR172 CYS173 GLN174 VAL175 GLU176 HIS177 PRO178 SER179 LEU180 THR181 ASP182 PRO183 VAL184 THR185 VAL186 GLU187 TRP188 LYS189
Unit 5 ALA999 GLY1000 PHE1001 LYS1002 GLY1003 GLU1004 GLN1005 GLY1006 PRO1007 LYS1008 GLY1009 GLU1010 PRO1011 GLY1012
Unit 6 ALA1999 GLY2000 PHE2001 LYS2002 GLY2003 GLU2004 GLN2005 GLY2006 PRO2007 LYS2008 GLY2009 GLU2010 PRO2011 GLY2012

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany