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2FSE
Biol. Unit 1
Info
Asym.Unit (131 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF A RHEUMATOID ARTHRITIS MHC SUSCEPTIBILITY ALLELE, HLA-DR1 (DRB1*0101), COMPLEXED WITH THE IMMUNODOMINANT DETERMINANT OF HUMAN TYPE II COLLAGEN
Authors
:
R. A. Ivey, E. F. Rosloniec, K. B. Whittington, A. H. Kang, H. W. Park
Date
:
22 Jan 06 (Deposition) - 19 Sep 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: C,D,F (1x)
Keywords
:
Rheumatoid Arthritis, Hla-Dr1, Collagen Type Ii, Crystal Structure, Antigen Presentation, Immune System, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. F. Rosloniec, R. A. Ivey, K. B. Whittington, A. H. Kang, H. W. Park
Crystallographic Structure Of A Rheumatoid Arthritis Mhc Susceptibility Allele, Hla-Dr1 (Drb1*0101), Complexed With The Immunodominant Determinant Of Human Type Ii Collagen.
J. Immunol. V. 177 3884 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(23, 23)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_016740 (Q10E, chain B, )
02: VAR_033381 (S37Y, chain B, )
03: VAR_016741 (G45R, chain B, )
04: VAR_033382 (Y47F, chain B, )
05: VAR_033383 (Y60S, chain B, )
06: VAR_016710 (L67I, chain B, )
07: VAR_016711 (Q70D, chain B, )
08: VAR_033384 (Q70E, chain B, )
09: VAR_033385 (Q70H, chain B, )
10: VAR_016742 (R71A, chain B, )
11: VAR_016712 (R71E, chain B, )
12: VAR_033386 (A73G, chain B, )
13: VAR_033387 (A74E, chain B, )
14: VAR_016713 (T77N, chain B, )
15: VAR_033388 (Y78H, chain B, )
16: VAR_016714 (V85A, chain B, )
17: VAR_016715 (G86V, chain B, )
18: VAR_033389 (G135D, chain B, )
19: VAR_033390 (T140T, chain B, )
20: VAR_033391 (I142M, chain B, )
21: VAR_033392 (R149H, chain B, )
22: VAR_033393 (Q166Q, chain B, )
23: VAR_033394 (T181I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
03
UniProt
VAR_016740
Q
39
E
2B11_HUMAN
Polymorphism
---
B
Q
10
E
04
UniProt
VAR_033381
S
66
Y
2B11_HUMAN
Polymorphism
16822820
B
S
37
Y
05
UniProt
VAR_016741
G
74
R
2B11_HUMAN
Polymorphism
---
B
G
45
R
06
UniProt
VAR_033382
Y
76
F
2B11_HUMAN
Polymorphism
1060346
B
Y
47
F
07
UniProt
VAR_033383
Y
89
S
2B11_HUMAN
Polymorphism
36074728
B
Y
60
S
08
UniProt
VAR_016710
L
96
I
2B11_HUMAN
Polymorphism
---
B
L
67
I
09
UniProt
VAR_016711
Q
99
D
2B11_HUMAN
Polymorphism
---
B
Q
70
D
10
UniProt
VAR_033384
Q
99
E
2B11_HUMAN
Polymorphism
17881965
B
Q
70
E
11
UniProt
VAR_033385
Q
99
H
2B11_HUMAN
Polymorphism
17879599
B
Q
70
H
12
UniProt
VAR_016742
R
100
A
2B11_HUMAN
Polymorphism
---
B
R
71
A
13
UniProt
VAR_016712
R
100
E
2B11_HUMAN
Polymorphism
---
B
R
71
E
14
UniProt
VAR_033386
A
102
G
2B11_HUMAN
Polymorphism
17878857
B
A
73
G
15
UniProt
VAR_033387
A
103
E
2B11_HUMAN
Polymorphism
16822805
B
A
74
E
16
UniProt
VAR_016713
T
106
N
2B11_HUMAN
Polymorphism
16822752
B
T
77
N
17
UniProt
VAR_033388
Y
107
H
2B11_HUMAN
Polymorphism
16822512
B
Y
78
H
18
UniProt
VAR_016714
V
114
A
2B11_HUMAN
Polymorphism
17424145
B
V
85
A
19
UniProt
VAR_016715
G
115
V
2B11_HUMAN
Polymorphism
2230810
B
G
86
V
20
UniProt
VAR_033389
G
164
D
2B11_HUMAN
Polymorphism
1059633
B
G
135
D
21
UniProt
VAR_033390
A
169
T
2B11_HUMAN
Polymorphism
2308768
B
T
140
T
22
UniProt
VAR_033391
V
171
M
2B11_HUMAN
Polymorphism
701829
B
I
142
M
23
UniProt
VAR_033392
Q
178
H
2B11_HUMAN
Polymorphism
701830
B
R
149
H
24
UniProt
VAR_033393
R
195
Q
2B11_HUMAN
Polymorphism
3205588
B
Q
166
Q
25
UniProt
VAR_033394
T
210
I
2B11_HUMAN
Polymorphism
17423930
B
T
181
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:161-167)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
DRA_HUMAN
186-192
1
A:161-167
-
2B11_HUMAN
200-206
1
B:171-177
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d2fsea1 (A:82-181)
1b: SCOP_d2fsec1 (C:82-180)
2a: SCOP_d2fseb1 (B:93-190)
2b: SCOP_d2fsed1 (D:93-189)
3a: SCOP_d2fsea2 (A:4-81)
3b: SCOP_d2fsec2 (C:4-81)
4a: SCOP_d2fseb2 (B:5-92)
4b: SCOP_d2fsed2 (D:4-92)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
1a
d2fsea1
A:82-181
1b
d2fsec1
C:82-180
Mouse (Mus musculus) [TaxId: 10090]
(309)
2a
d2fseb1
B:93-190
2b
d2fsed1
D:93-189
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
automated matches
(29)
Human (Homo sapiens) [TaxId: 9606]
(24)
3a
d2fsea2
A:4-81
3b
d2fsec2
C:4-81
Mouse (Mus musculus) [TaxId: 10090]
(3)
4a
d2fseb2
B:5-92
4b
d2fsed2
D:4-92
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2fseB01 (B:5-92)
1b: CATH_2fseA01 (A:4-81)
1c: CATH_2fseC01 (C:4-81)
1d: CATH_2fseD01 (D:4-92)
2a: CATH_2fseA02 (A:82-181)
2b: CATH_2fseC02 (C:82-180)
2c: CATH_2fseB02 (B:93-190)
2d: CATH_2fseD02 (D:93-189)
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(
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(
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Architectures
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Human (Homo sapiens)
(48)
1a
2fseB01
B:5-92
1b
2fseA01
A:4-81
1c
2fseC01
C:4-81
1d
2fseD01
D:4-92
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
2fseA02
A:82-181
2b
2fseC02
C:82-180
2c
2fseB02
B:93-190
2d
2fseD02
D:93-189
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (131 KB)
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Header - Biol.Unit 1
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