1H15 - JenaLib

Asymmetric Unit (32, 64)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_050356	R	33	Q	DRB5_HUMAN	Polymorphism	34716432	B/E	R	4	Q
02	UniProt	VAR_060954	R	35	C	DRB5_HUMAN	Polymorphism	1136744	B/E	R	6	C
03	UniProt	VAR_050357	K	41	T	DRB5_HUMAN	Polymorphism	200581589	B/E	K	12	T
04	UniProt	VAR_060955	H	57	Q	DRB5_HUMAN	Polymorphism	202185589	B/E	H	28	Q
05	UniProt	VAR_060956	D	59	G	DRB5_HUMAN	Polymorphism	41546317	B/E	D	30	G
06	UniProt	VAR_060957	D	59	H	DRB5_HUMAN	Polymorphism	707955	B/E	D	30	H
07	UniProt	VAR_050358	N	62	H	DRB5_HUMAN	Polymorphism	1059576	B/E	N	33	H
08	UniProt	VAR_060958	D	66	N	DRB5_HUMAN	Polymorphism	77853982	B/E	D	37	N
09	UniProt	VAR_060959	D	66	Y	DRB5_HUMAN	Polymorphism	77853982	B/E	D	37	Y
10	UniProt	VAR_060960	L	67	V	DRB5_HUMAN	Polymorphism	1059580	B/E	L	38	V
11	UniProt	VAR_060961	A	87	E	DRB5_HUMAN	Polymorphism	---	B/E	A	58	E
12	UniProt	VAR_060962	Y	89	S	DRB5_HUMAN	Polymorphism	41541218	B/E	Y	60	S
13	UniProt	VAR_060964	F	96	I	DRB5_HUMAN	Polymorphism	41562819	B/E	F	67	I
14	UniProt	VAR_060963	F	96	L	DRB5_HUMAN	Polymorphism	41562819	B/E	F	67	L
15	UniProt	VAR_060965	D	99	E	DRB5_HUMAN	Polymorphism	41559913	B/E	D	70	E
16	UniProt	VAR_060966	D	99	G	DRB5_HUMAN	Polymorphism	41545413	B/E	D	70	G
17	UniProt	VAR_060967	D	99	H	DRB5_HUMAN	Polymorphism	41547217	B/E	D	70	H
18	UniProt	VAR_060968	D	99	N	DRB5_HUMAN	Polymorphism	41547217	B/E	D	70	N
19	UniProt	VAR_060969	D	99	Q	DRB5_HUMAN	Polymorphism	---	B/E	D	70	Q
20	UniProt	VAR_060970	D	99	R	DRB5_HUMAN	Polymorphism	---	B/E	D	70	R
21	UniProt	VAR_060971	R	100	A	DRB5_HUMAN	Polymorphism	---	B/E	R	71	A
22	UniProt	VAR_060972	R	100	G	DRB5_HUMAN	Polymorphism	41551116	B/E	R	71	G
23	UniProt	VAR_060973	R	100	T	DRB5_HUMAN	Polymorphism	41544215	B/E	R	71	T
24	UniProt	VAR_060974	A	103	E	DRB5_HUMAN	Polymorphism	1059598	B/E	A	74	E
25	UniProt	VAR_060975	A	103	L	DRB5_HUMAN	Polymorphism	---	B/E	A	74	L
26	UniProt	VAR_050359	T	106	N	DRB5_HUMAN	Polymorphism	115817940	B/E	T	77	N
27	UniProt	VAR_060976	Y	107	V	DRB5_HUMAN	Polymorphism	---	B/E	Y	78	V
28	UniProt	VAR_060977	V	114	A	DRB5_HUMAN	Polymorphism	1136778	B/E	V	85	A
29	UniProt	VAR_060978	G	115	V	DRB5_HUMAN	Polymorphism	41556512	B/E	G	86	V
30	UniProt	VAR_039872	G	154	A	DRB5_HUMAN	Polymorphism	113395425	B/E	G	125	A
31	UniProt	VAR_060979	S	164	G	DRB5_HUMAN	Polymorphism	1059633	B/E	S	135	G
32	UniProt	VAR_060980	T	186	I	DRB5_HUMAN	Polymorphism	41559420	B/E	T	157	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (32, 32)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_050356	R	33	Q	DRB5_HUMAN	Polymorphism	34716432	B	R	4	Q
02	UniProt	VAR_060954	R	35	C	DRB5_HUMAN	Polymorphism	1136744	B	R	6	C
03	UniProt	VAR_050357	K	41	T	DRB5_HUMAN	Polymorphism	200581589	B	K	12	T
04	UniProt	VAR_060955	H	57	Q	DRB5_HUMAN	Polymorphism	202185589	B	H	28	Q
05	UniProt	VAR_060956	D	59	G	DRB5_HUMAN	Polymorphism	41546317	B	D	30	G
06	UniProt	VAR_060957	D	59	H	DRB5_HUMAN	Polymorphism	707955	B	D	30	H
07	UniProt	VAR_050358	N	62	H	DRB5_HUMAN	Polymorphism	1059576	B	N	33	H
08	UniProt	VAR_060958	D	66	N	DRB5_HUMAN	Polymorphism	77853982	B	D	37	N
09	UniProt	VAR_060959	D	66	Y	DRB5_HUMAN	Polymorphism	77853982	B	D	37	Y
10	UniProt	VAR_060960	L	67	V	DRB5_HUMAN	Polymorphism	1059580	B	L	38	V
11	UniProt	VAR_060961	A	87	E	DRB5_HUMAN	Polymorphism	---	B	A	58	E
12	UniProt	VAR_060962	Y	89	S	DRB5_HUMAN	Polymorphism	41541218	B	Y	60	S
13	UniProt	VAR_060964	F	96	I	DRB5_HUMAN	Polymorphism	41562819	B	F	67	I
14	UniProt	VAR_060963	F	96	L	DRB5_HUMAN	Polymorphism	41562819	B	F	67	L
15	UniProt	VAR_060965	D	99	E	DRB5_HUMAN	Polymorphism	41559913	B	D	70	E
16	UniProt	VAR_060966	D	99	G	DRB5_HUMAN	Polymorphism	41545413	B	D	70	G
17	UniProt	VAR_060967	D	99	H	DRB5_HUMAN	Polymorphism	41547217	B	D	70	H
18	UniProt	VAR_060968	D	99	N	DRB5_HUMAN	Polymorphism	41547217	B	D	70	N
19	UniProt	VAR_060969	D	99	Q	DRB5_HUMAN	Polymorphism	---	B	D	70	Q
20	UniProt	VAR_060970	D	99	R	DRB5_HUMAN	Polymorphism	---	B	D	70	R
21	UniProt	VAR_060971	R	100	A	DRB5_HUMAN	Polymorphism	---	B	R	71	A
22	UniProt	VAR_060972	R	100	G	DRB5_HUMAN	Polymorphism	41551116	B	R	71	G
23	UniProt	VAR_060973	R	100	T	DRB5_HUMAN	Polymorphism	41544215	B	R	71	T
24	UniProt	VAR_060974	A	103	E	DRB5_HUMAN	Polymorphism	1059598	B	A	74	E
25	UniProt	VAR_060975	A	103	L	DRB5_HUMAN	Polymorphism	---	B	A	74	L
26	UniProt	VAR_050359	T	106	N	DRB5_HUMAN	Polymorphism	115817940	B	T	77	N
27	UniProt	VAR_060976	Y	107	V	DRB5_HUMAN	Polymorphism	---	B	Y	78	V
28	UniProt	VAR_060977	V	114	A	DRB5_HUMAN	Polymorphism	1136778	B	V	85	A
29	UniProt	VAR_060978	G	115	V	DRB5_HUMAN	Polymorphism	41556512	B	G	86	V
30	UniProt	VAR_039872	G	154	A	DRB5_HUMAN	Polymorphism	113395425	B	G	125	A
31	UniProt	VAR_060979	S	164	G	DRB5_HUMAN	Polymorphism	1059633	B	S	135	G
32	UniProt	VAR_060980	T	186	I	DRB5_HUMAN	Polymorphism	41559420	B	T	157	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (32, 32)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_050356	R	33	Q	DRB5_HUMAN	Polymorphism	34716432	E	R	4	Q
02	UniProt	VAR_060954	R	35	C	DRB5_HUMAN	Polymorphism	1136744	E	R	6	C
03	UniProt	VAR_050357	K	41	T	DRB5_HUMAN	Polymorphism	200581589	E	K	12	T
04	UniProt	VAR_060955	H	57	Q	DRB5_HUMAN	Polymorphism	202185589	E	H	28	Q
05	UniProt	VAR_060956	D	59	G	DRB5_HUMAN	Polymorphism	41546317	E	D	30	G
06	UniProt	VAR_060957	D	59	H	DRB5_HUMAN	Polymorphism	707955	E	D	30	H
07	UniProt	VAR_050358	N	62	H	DRB5_HUMAN	Polymorphism	1059576	E	N	33	H
08	UniProt	VAR_060958	D	66	N	DRB5_HUMAN	Polymorphism	77853982	E	D	37	N
09	UniProt	VAR_060959	D	66	Y	DRB5_HUMAN	Polymorphism	77853982	E	D	37	Y
10	UniProt	VAR_060960	L	67	V	DRB5_HUMAN	Polymorphism	1059580	E	L	38	V
11	UniProt	VAR_060961	A	87	E	DRB5_HUMAN	Polymorphism	---	E	A	58	E
12	UniProt	VAR_060962	Y	89	S	DRB5_HUMAN	Polymorphism	41541218	E	Y	60	S
13	UniProt	VAR_060964	F	96	I	DRB5_HUMAN	Polymorphism	41562819	E	F	67	I
14	UniProt	VAR_060963	F	96	L	DRB5_HUMAN	Polymorphism	41562819	E	F	67	L
15	UniProt	VAR_060965	D	99	E	DRB5_HUMAN	Polymorphism	41559913	E	D	70	E
16	UniProt	VAR_060966	D	99	G	DRB5_HUMAN	Polymorphism	41545413	E	D	70	G
17	UniProt	VAR_060967	D	99	H	DRB5_HUMAN	Polymorphism	41547217	E	D	70	H
18	UniProt	VAR_060968	D	99	N	DRB5_HUMAN	Polymorphism	41547217	E	D	70	N
19	UniProt	VAR_060969	D	99	Q	DRB5_HUMAN	Polymorphism	---	E	D	70	Q
20	UniProt	VAR_060970	D	99	R	DRB5_HUMAN	Polymorphism	---	E	D	70	R
21	UniProt	VAR_060971	R	100	A	DRB5_HUMAN	Polymorphism	---	E	R	71	A
22	UniProt	VAR_060972	R	100	G	DRB5_HUMAN	Polymorphism	41551116	E	R	71	G
23	UniProt	VAR_060973	R	100	T	DRB5_HUMAN	Polymorphism	41544215	E	R	71	T
24	UniProt	VAR_060974	A	103	E	DRB5_HUMAN	Polymorphism	1059598	E	A	74	E
25	UniProt	VAR_060975	A	103	L	DRB5_HUMAN	Polymorphism	---	E	A	74	L
26	UniProt	VAR_050359	T	106	N	DRB5_HUMAN	Polymorphism	115817940	E	T	77	N
27	UniProt	VAR_060976	Y	107	V	DRB5_HUMAN	Polymorphism	---	E	Y	78	V
28	UniProt	VAR_060977	V	114	A	DRB5_HUMAN	Polymorphism	1136778	E	V	85	A
29	UniProt	VAR_060978	G	115	V	DRB5_HUMAN	Polymorphism	41556512	E	G	86	V
30	UniProt	VAR_039872	G	154	A	DRB5_HUMAN	Polymorphism	113395425	E	G	125	A
31	UniProt	VAR_060979	S	164	G	DRB5_HUMAN	Polymorphism	1059633	E	S	135	G
32	UniProt	VAR_060980	T	186	I	DRB5_HUMAN	Polymorphism	41559420	E	T	157	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (1, 4)

Exons (8, 16)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:180
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:180
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
            DRA_HUMAN    28 EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA 207
               SCOP domains d1h15a2 A:3-81 Class II MHC alpha chain, N-terminal domain                     d1h15a1 A:82-182 Class II MHC alpha chain, C-terminal domain                                          SCOP domains
               CATH domains 1h15A01 A:3-81                                                                 1h15A02 A:82-181 Immunoglobulins                                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee...eeeeeeee..eeeeeee....eeee.hhhhhhhee.hhhhhhhhhhhhhhhhhhhhhh............eeeee.........eeeeeeeeee....eeeeeee..eee....ee...ee.....eeeeeeeee......eeeeeeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
           Transcript 2 (1) 2---------------------------------------------------------------------------------Exon 2.8c  PDB: A:85-179 UniProt: 110-204                                                      --- Transcript 2 (1)
           Transcript 2 (2) Exon 2.7b  PDB: A:3-85 UniProt: 28-110                                             ---------------------------------------------------------------------------------------------2.9a Transcript 2 (2)
                 1h15 A   3 EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA 182
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182

Chain B from PDB  Type:PROTEIN  Length:189
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:189
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
           DRB5_HUMAN    31 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA 219
               SCOP domains d1h15b2 B:2-92 Class II MHC beta chain, N-terminal domain                                  d1h15b1 B:93-190 Class II MHC beta chain, C-terminal domain                                        SCOP domains
               CATH domains 1h15B01 B:2-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1        1h15B02 B:93-190 Immunoglobulins                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....eeeeeeeeee..eeeeeee.....eee..............hhhhhhhhhhhhhhhhhhhhhh...............eeee........eeeeeeeeee.....eeeeee........eee...ee.....eeeeeeeee......eeeeeee.......eeeeee. Sec.struct. author
             SAPs(SNPs) (1) --Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A---------G---------------------I--------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------H------Y-----------------------------L--GG--L-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------------------------------------------------------------HT----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------------------------------------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (4)
             SAPs(SNPs) (5) --------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (5)
             SAPs(SNPs) (6) --------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (6)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
           Transcript 1 (1) 1.1 -----------------------------------------------------------------------------------------Exon 1.3  PDB: B:95-189 UniProt: 124-218                                                       - Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2  PDB: B:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------1. Transcript 1 (2)
                 1h15 B   2 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA 190
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain C from PDB  Type:PROTEIN  Length:14
 aligned with DPOL_EBVB9 | P03198 from UniProtKB/Swiss-Prot  Length:1015

    Alignment length:14
                                   637    
           DPOL_EBVB9   628 GGVYHFVKKHVHES 641
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .ee........... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 1h15 C 628 GGVYHFVKKHVHES 641
                                   637

Chain D from PDB  Type:PROTEIN  Length:180
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:180
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
            DRA_HUMAN    28 EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA 207
               SCOP domains d1h15d2 D:3-81 Class II MHC alpha chain, N-terminal domain                     d1h15d1 D:82-182 Class II MHC alpha chain, C-terminal domain                                          SCOP domains
               CATH domains 1h15D01 D:3-81                                                                 1h15D02 D:82-181 Immunoglobulins                                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeee....eeeeeeee..eeeeeee....eeee.hhhhhhhee.hhhhhhhhhhhhhhhhhhhhhh...........eeeeee.........eeeeeeeeee.......eeee..ee..........ee.....eeeeeeeee.......eeeee........eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
           Transcript 2 (1) 2---------------------------------------------------------------------------------Exon 2.8c  PDB: D:85-179 UniProt: 110-204                                                      --- Transcript 2 (1)
           Transcript 2 (2) Exon 2.7b  PDB: D:3-85 UniProt: 28-110                                             ---------------------------------------------------------------------------------------------2.9a Transcript 2 (2)
                 1h15 D   3 EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA 182
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182

Chain E from PDB  Type:PROTEIN  Length:189
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:189
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
           DRB5_HUMAN    31 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA 219
               SCOP domains d1h15e2 E:2-92 Class II MHC beta chain, N-terminal domain                                  d1h15e1 E:93-190 Class II MHC beta chain, C-terminal domain                                        SCOP domains
               CATH domains 1h15E01 E:2-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1        1h15E02 E:93-190 Immunoglobulins                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee....eeeeeeeeee..eeeeeee.....eee..............hhhhhhhhhhhhhhhhhhhhhh............eeeeee...........eeeeee.......eeeeee..eee...eee...........eeeeee........eeeeeee.......eeeeee. Sec.struct. author
             SAPs(SNPs) (1) --Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A---------G---------------------I--------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------H------Y-----------------------------L--GG--L-------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------------------------------------------------------------HT----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------------------------------------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (4)
             SAPs(SNPs) (5) --------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (5)
             SAPs(SNPs) (6) --------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (6)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------- PROSITE
           Transcript 1 (1) 1.1 -----------------------------------------------------------------------------------------Exon 1.3  PDB: E:95-189 UniProt: 124-218                                                       - Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2  PDB: E:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------1. Transcript 1 (2)
                 1h15 E   2 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA 190
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

Chain F from PDB  Type:PROTEIN  Length:14
 aligned with DPOL_EBVB9 | P03198 from UniProtKB/Swiss-Prot  Length:1015

    Alignment length:14
                                   637    
           DPOL_EBVB9   628 GGVYHFVKKHVHES 641
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .ee........... Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 1h15 F 628 GGVYHFVKKHVHES 641
                                   637

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (4, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (50, 79)

Asymmetric Unit(hide GO term definitions)

Chain A,D (DRA_HUMAN | P01903)

molecular function
	GO:0023026	MHC class II protein complex binding	Interacting selectively and non-covalently with the class II major histocompatibility complex.
	GO:0032395	MHC class II receptor activity	Combining with an MHC class II protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.
	GO:0042605	peptide antigen binding	Interacting selectively and non-covalently with an antigen peptide.
biological process
	GO:0031295	T cell costimulation	The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
	GO:0050852	T cell receptor signaling pathway	A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
	GO:0019882	antigen processing and presentation	The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
	GO:0019886	antigen processing and presentation of exogenous peptide antigen via MHC class II	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
	GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.
	GO:0050890	cognition	The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
	GO:0006955	immune response	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0060333	interferon-gamma-mediated signaling pathway	A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
	GO:0002503	peptide antigen assembly with MHC class II protein complex	The binding of a peptide to the antigen binding groove of an MHC class II protein complex.
	GO:0002506	polysaccharide assembly with MHC class II protein complex	The binding of a polysaccharide to the antigen binding groove of an MHC class II protein complex.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0012507	ER to Golgi transport vesicle membrane	The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0042613	MHC class II protein complex	A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0030669	clathrin-coated endocytic vesicle membrane	The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
	GO:0030666	endocytic vesicle membrane	The lipid bilayer surrounding an endocytic vesicle.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0071556	integral component of lumenal side of endoplasmic reticulum membrane	The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0031902	late endosome membrane	The lipid bilayer surrounding a late endosome.
	GO:0005765	lysosomal membrane	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0032588	trans-Golgi network membrane	The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
	GO:0030658	transport vesicle membrane	The lipid bilayer surrounding a transport vesicle.

Chain B,E (DRB5_HUMAN | Q30154)

molecular function
	GO:0042605	peptide antigen binding	Interacting selectively and non-covalently with an antigen peptide.
biological process
	GO:0031295	T cell costimulation	The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
	GO:0050852	T cell receptor signaling pathway	A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
	GO:0019882	antigen processing and presentation	The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
	GO:0019886	antigen processing and presentation of exogenous peptide antigen via MHC class II	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
	GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.
	GO:0006955	immune response	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0060333	interferon-gamma-mediated signaling pathway	A series of molecular signals initiated by the binding of interferon-gamma to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription. Interferon gamma is the only member of the type II interferon found so far.
cellular component
	GO:0012507	ER to Golgi transport vesicle membrane	The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0042613	MHC class II protein complex	A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen.
	GO:0030669	clathrin-coated endocytic vesicle membrane	The lipid bilayer surrounding a clathrin-coated endocytic vesicle.
	GO:0030666	endocytic vesicle membrane	The lipid bilayer surrounding an endocytic vesicle.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0071556	integral component of lumenal side of endoplasmic reticulum membrane	The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the lumenal side of the membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0031902	late endosome membrane	The lipid bilayer surrounding a late endosome.
	GO:0005765	lysosomal membrane	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0032588	trans-Golgi network membrane	The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
	GO:0030658	transport vesicle membrane	The lipid bilayer surrounding a transport vesicle.

Chain C,F (DPOL_EBVB9 | P03198)

molecular function
	GO:0008408	3'-5' exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003887	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
	GO:0004527	exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0071897	DNA biosynthetic process	The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0039686	bidirectional double-stranded viral DNA replication	A viral DNA replication process where replication occurs in both directions from the starting point. This creates two replication forks, moving in opposite directions.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (4, 4)

SS Bonds (6, 6)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (32, 64)

PROSITE Motifs (1, 4)

Exons (8, 16)

Sequences/Alignments

Classification and Annotation

SCOP Domains (4, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (50, 79)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File