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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM ENTEROCOCCUS FAECALIS V583
 
Authors :  R. Zhang, N. Maltseva, S. Moy, F. Collart, M. Cymborowski, W. Minor, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  09 Sep 05  (Deposition) - 25 Oct 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Enterococcus Faecalis, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, N. Maltseva, S. Moy, F. Collart, M. Cymborowski, W. Minor, A. Joachimiak
The 2. 0 A Crystal Structure Of A Hypothetical Protein From Enterococcus Faecalis V583
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN EF2904
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 226185
    Strain: V583

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:92 , HIS A:94 , HIS A:167 , ASP A:189 , ZN A:602 , HOH A:795 , HOH A:941BINDING SITE FOR RESIDUE ZN A 601
2AC2SOFTWAREASP A:96 , HIS A:97 , ASP A:189 , HIS A:404 , ZN A:601 , HOH A:652 , HOH A:795BINDING SITE FOR RESIDUE ZN A 602
3AC3SOFTWAREHIS B:92 , HIS B:94 , HIS B:167 , ASP B:189 , ZN B:604 , HOH B:616BINDING SITE FOR RESIDUE ZN B 603
4AC4SOFTWAREASP B:96 , HIS B:97 , ASP B:189 , HIS B:404 , ZN B:603 , HOH B:781BINDING SITE FOR RESIDUE ZN B 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AZ4)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Phe A:34 -Asp A:35
2Gln A:351 -Pro A:352
3Phe B:34 -Asp B:35
4Glu B:226 -Pro B:227
5Asp B:228 -Pro B:229
6Pro B:229 -Ala B:230
7Gln B:351 -Pro B:352

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 2AZ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:425
 aligned with Q82ZZ3_ENTFA | Q82ZZ3 from UniProtKB/TrEMBL  Length:429

    Alignment length:425
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424     
         Q82ZZ3_ENTFA     5 AKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERILPERGEQIVL 429
               SCOP domains ---------------------------------------------------d2az4a1 A:56-238 Hypothetical protein EF2904                                                                                                                                           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2az4A01 A:5-225,A:380-429 Metallo-beta-lactamase, chain A                                                                                                                                                                    2az4A02 A:226-379 Metallo-hydrolase/oxidoreductase                                                                                                        2az4A01 A:5-225,A:380-429                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee........eeeeee..eeeee...............hhhhhhhh..........hhhhh............eeeee....hhhhhhhhhhh.....eeeehhhhhhhhhhh....................eee....eeee..eeeeeee........eeeeeee..eeeee.........hhhhhhhhhhhhh...eeeee.hhhhh.............hhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eee..........hhhhh.hhhhhhhh...eeee...hhhhh....eeeee........hhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..eeeee...hhhhh.....ee.......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2az4 A   5 AKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERILPERGEQIVL 429
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424     


Chain B from PDB  Type:PROTEIN  Length:426
 aligned with Q82ZZ3_ENTFA | Q82ZZ3 from UniProtKB/TrEMBL  Length:429

    Alignment length:426
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423      
         Q82ZZ3_ENTFA     4 KAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERILPERGEQIVL 429
               SCOP domains ----------------------------------------------------d2az4b1 B:56-238 Hypothetical protein EF2904                                                                                                                                           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2az4B01 B:4-225,B:380-429 Metallo-beta-lactamase, chain A                                                                                                                                                                     2az4B02 B:226-379 Metallo-hydrolase/oxidoreductase                                                                                                        2az4B01 B:4-225,B:380-429                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee........eeeeee..eeeee......hhhhh....hhhhhhhh..........hhhhh............eeeee....hhhhhhhhhhh.....eeeehhhhhhhhhhh....................eee....eeee..eeeeeee........eeeeeee..eeeee.........hhhhhhhhhhhhh...eeeee.hhhh..............hhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhh..eeeeehhhhhhhhhhhh...eee..........hhhhh.hhhhhhhh...eeee...hhhhh....eeeee..........hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh..eeeee...hhhhh.....ee.......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2az4 B   4 KAKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMAALLLEVFGIEVRYYYAESGKIPELNPALEIPYDTLLKDKTDYLWQVVNQFDNLQEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLENPYGERILPERGEQIVL 429
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AZ4)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q82ZZ3_ENTFA | Q82ZZ3)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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