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(-) Description

Title :  TRIMERIC FOLDON OF THE T4 PHAGEHEAD FIBRITIN
 
Authors :  S. Guthe, L. Kapinos, A. Moglich, S. Meier, T. Kiefhaber, S. Grzesiek
Date :  10 Nov 03  (Deposition) - 30 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (10x)
Keywords :  Beta Hairpin, Trimer, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Guthe, L. Kapinos, A. Moglich, S. Meier, S. Grzesiek, T. Kiefhaber
Very Fast Folding And Association Of A Trimerization Domain From Bacteriophage T4 Fibritin.
J. Mol. Biol. V. 337 905 2004
PubMed-ID: 15033360  |  Reference-DOI: 10.1016/J.JMB.2004.02.020
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - WHISKER ANTIGEN CONTROL PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET32A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: TRIMERIZATION DOMAIN (RESIDUES 457-483)
    Gene: WAC
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1RFO)

(-) Sites  (0, 0)

(no "Site" information available for 1RFO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RFO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RFO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RFO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RFO)

(-) Exons   (0, 0)

(no "Exon" information available for 1RFO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:27
                                   467       477       
             WAC_BPT4   458 GYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains d1rfoa_ A: Fibritin         SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 1rfo A   1 GYIPEAPRDGQAYVRKDGEWVLLSTFL  27
                                    10        20       


Chain B from PDB  Type:PROTEIN  Length:27
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:27
                                   467       477       
             WAC_BPT4   458 GYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains d1rfob_ B: Fibritin         SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ............eeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 1rfo B   1 GYIPEAPRDGQAYVRKDGEWVLLSTFL  27
                                    10        20       


Chain C from PDB  Type:PROTEIN  Length:27
 aligned with WAC_BPT4 | P10104 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:27
                                   467       477       
             WAC_BPT4   458 GYIPEAPRDGQAYVRKDGEWVFLSTFL 484
               SCOP domains d1rfoc_ C: Fibritin         SCOP domains
               CATH domains --------------------------- CATH domains
           Pfam domains (1) Fibritin_C-1rfoC01 C:1-26 - Pfam domains (1)
           Pfam domains (2) Fibritin_C-1rfoC02 C:1-26 - Pfam domains (2)
           Pfam domains (3) Fibritin_C-1rfoC03 C:1-26 - Pfam domains (3)
         Sec.struct. author ...........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 1rfo C   1 GYIPEAPRDGQAYVRKDGEWVLLSTFL  27
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

NMR Structure
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1RFO)

(-) Pfam Domains  (1, 3)

NMR Structure
(-)
Clan: no clan defined [family: Fibritin_C] (7)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A,B,C   (WAC_BPT4 | P10104)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WAC_BPT4 | P10104: 1aa0 1avy 1ox3 1v1h 1v1i 2bsg 2ibl 2kbl 3a1m 3j2o 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4ncu 4ncv 4ncw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1RFO)