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(-) Description

Title :  PRFA-G145S, A CONSTITUTIVE ACTIVE MUTANT OF THE TRANSCRIPTIONAL REGULATOR IN L.MONOCYTOGENES
 
Authors :  M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
Date :  20 Dec 04  (Deposition) - 14 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,D,E,F,G,H,I
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  D,E  (1x)
Biol. Unit 3:  F,G  (1x)
Biol. Unit 4:  H,I  (1x)
Keywords :  Bacterial Infection, Human Pathogen, Transcriptional Regulator, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
The Mutation G145S In Prfa, A Key Virulence Regulator Of Listeria Monocytogenes, Increases Dna-Binding Affinity By Stabilizing The Hth Motif
Mol. Microbiol. V. 56 433 2005
PubMed-ID: 15813735  |  Reference-DOI: 10.1111/J.1365-2958.2005.04561.X

(-) Compounds

Molecule 1 - PRFA
    Chains: A, B, D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-30
    Expression System Strain: M15
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABDEFGHI
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   DE    
Biological Unit 3 (1x):     FG  
Biological Unit 4 (1x):       HI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2DTU1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3PR38Mod. Amino AcidS,S-PROPYLTHIOCYSTEINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1DTT-1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2DTU1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3PR32Mod. Amino AcidS,S-PROPYLTHIOCYSTEINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1DTT-1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2DTU-1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3PR32Mod. Amino AcidS,S-PROPYLTHIOCYSTEINE
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2DTU-1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3PR32Mod. Amino AcidS,S-PROPYLTHIOCYSTEINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1DTT-1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
2DTU-1Ligand/Ion(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3PR32Mod. Amino AcidS,S-PROPYLTHIOCYSTEINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:61 , TYR A:62 , LYS A:64 , PHE A:67 , TRP A:224BINDING SITE FOR RESIDUE DTU A1238
2AC2SOFTWAREGLN F:61 , LYS F:64 , PHE F:67 , TYR F:126 , TRP F:224BINDING SITE FOR RESIDUE DTT F1238

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BGC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BGC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 8)

Asymmetric Unit (1, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_PRFA_LISMO_001 *G145SPRFA_LISMO  ---  ---A/B/D/E/F/G/H/IS145S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_PRFA_LISMO_001 *G145SPRFA_LISMO  ---  ---A/BS145S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_PRFA_LISMO_001 *G145SPRFA_LISMO  ---  ---D/ES145S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_PRFA_LISMO_001 *G145SPRFA_LISMO  ---  ---F/GS145S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_PRFA_LISMO_001 *G145SPRFA_LISMO  ---  ---H/IS145S
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_CRP_2PS51063 Crp-type HTH domain profile.PRFA_LISMO137-212
 
 
 
 
 
 
 		  8A:137-212
B:137-212
D:137-212
E:137-212
F:137-212
G:137-212
H:137-212
I:137-212
2HTH_CRP_1PS00042 Crp-type HTH domain signature.PRFA_LISMO169-193
 
 
 
 
 
 
 		  8A:169-193
B:169-193
D:169-193
E:169-193
F:169-193
G:169-193
H:169-193
I:169-193
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_CRP_2PS51063 Crp-type HTH domain profile.PRFA_LISMO137-212
 
 
 
 
 
 
 		  2A:137-212
B:137-212
-
-
-
-
-
-
2HTH_CRP_1PS00042 Crp-type HTH domain signature.PRFA_LISMO169-193
 
 
 
 
 
 
 		  2A:169-193
B:169-193
-
-
-
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_CRP_2PS51063 Crp-type HTH domain profile.PRFA_LISMO137-212
 
 
 
 
 
 
 		  2-
-
D:137-212
E:137-212
-
-
-
-
2HTH_CRP_1PS00042 Crp-type HTH domain signature.PRFA_LISMO169-193
 
 
 
 
 
 
 		  2-
-
D:169-193
E:169-193
-
-
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_CRP_2PS51063 Crp-type HTH domain profile.PRFA_LISMO137-212
 
 
 
 
 
 
 		  2-
-
-
-
F:137-212
G:137-212
-
-
2HTH_CRP_1PS00042 Crp-type HTH domain signature.PRFA_LISMO169-193
 
 
 
 
 
 
 		  2-
-
-
-
F:169-193
G:169-193
-
-
Biological Unit 4 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_CRP_2PS51063 Crp-type HTH domain profile.PRFA_LISMO137-212
 
 
 
 
 
 
 		  2-
-
-
-
-
-
H:137-212
I:137-212
2HTH_CRP_1PS00042 Crp-type HTH domain signature.PRFA_LISMO169-193
 
 
 
 
 
 
 		  2-
-
-
-
-
-
H:169-193
I:169-193

(-) Exons   (0, 0)

(no "Exon" information available for 2BGC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
           PRFA_LISMO     3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgca2 A:3-137 automated matches                                                                                                      d2bgca1 A:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcA01 A:3-109 Jelly Rolls                                                                                ---------------------------2bgcA02 A:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: A:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: A:169-193-------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc A   3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222      |232     
                                                                                                                                                                                                                                                            229-PR3    


Chain B from PDB  Type:PROTEIN  Length:237
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           PRFA_LISMO     1 MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgcb2 B:1-137 automated matches                                                                                                        d2bgcb1 B:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcB01 B:1-109 Jelly Rolls                                                                                  ---------------------------2bgcB02 B:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: B:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: B:169-193-------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc B   1 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
                                                                                                                                                                                                                                                              229-PR3    


Chain D from PDB  Type:PROTEIN  Length:227
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
           PRFA_LISMO     3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgcd2 D:3-137 automated matches                                                                                                      d2bgcd1 D:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcD01 D:3-109 Jelly Rolls                                                                                ---------------------------2bgcD02 D:137-237 'winged helix' repres        sor DNA binding domain                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeeee...eeeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhh--------hhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: D:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: D:169-193-------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc D   3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELG--------SAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172  |      - |     192       202       212       222      |232     
                                                                                                                                                                                                      175      184                                          229-PR3    


Chain E from PDB  Type:PROTEIN  Length:237
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           PRFA_LISMO     1 MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgce2 E:1-137 automated matches                                                                                                        d2bgce1 E:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcE01 E:1-109 Jelly Rolls                                                                                  ---------------------------2bgcE02 E:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: E:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: E:169-193-------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc E   1 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
                                                                                                                                                                                                                                                              229-PR3    


Chain F from PDB  Type:PROTEIN  Length:236
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
           PRFA_LISMO     2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgcf2 F:2-137 automated matches                                                                                                       d2bgcf1 F:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcF01 F:2-109 Jelly Rolls                                                                                 ---------------------------2bgcF02 F:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: F:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: F:169-193-------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc F   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
                                                                                                                                                                                                                                                             229-PR3    


Chain G from PDB  Type:PROTEIN  Length:235
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
           PRFA_LISMO     3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgcg2 G:3-137 automated matches                                                                                                      d2bgcg1 G:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcG01 G:3-109 Jelly Rolls                                                                                ---------------------------2bgcG02 G:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eeee.............eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: G:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: G:169-193-------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc G   3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222      |232     
                                                                                                                                                                                                                                                            229-PR3    


Chain H from PDB  Type:PROTEIN  Length:224
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:233
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232   
           PRFA_LISMO     3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGK 235
               SCOP domains d2bgch2 H:3-137 automated matches                                                                                                      d2bgch1 H:138-235 automated matches                                                                SCOP domains
               CATH domains 2bgcH01 H:3-109 Jelly Rolls                                                                                ---------------------------2bgcH02 H:137-235 'winged helix' repre         ssor DNA binding domain                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..ee..eee.......hhhh---------hhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: H:137-212 UniProt: 137-212                                  ----------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: H:169-193------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc H   3 AQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQEL---------SAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGK 235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 |       - |     192       202       212       222      |232   
                                                                                                                                                                                                     174       184                                          229-PR3  


Chain I from PDB  Type:PROTEIN  Length:236
 aligned with PRFA_LISMO | P22262 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
           PRFA_LISMO     2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
               SCOP domains d2bgci2 I:2-137 automated matches                                                                                                       d2bgci1 I:138-237 automated matches                                                                  SCOP domains
               CATH domains 2bgcI01 I:2-109 Jelly Rolls                                                                                 ---------------------------2bgcI02 I:137-237 'winged helix' repressor DNA binding domain                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee......hhhhhhh.....hhhhhhhhhhhhh...eeee..eeee..hhhhhhh.hhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: I:137-212 UniProt: 137-212                                  ------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: I:169-193-------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bgc I   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAcPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
                                                                                                                                                                                                                                                             229-PR3
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BGC)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E,F,G,H,I   (PRFA_LISMO | P22262)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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  2bgc
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRFA_LISMO | P22262: 1omi 2beo 5f1r 5lej 5lek 5lrr 5lrs

(-) Related Entries Specified in the PDB File

1omi CRYSTAL STRUCTURE OF PRFA,THE TRANSCRIPTIONAL REGULATOR INLISTERIA MONOCYTOGENES
2beo PRFA, TRANSCRIPTIONAL REGULATOR IN LISTERIA MONOCYTOGENES