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(-) Description

Title :  THE TRANSCRIPTIONAL REGULATOR PRFA FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A RING-FUSED 2-PYRIDONE (C10)
 
Authors :  A. Begum, C. Grundstrom, J. A. D. Good, C. Andersson, F. Almqvist, J. Joh U. H. Sauer, A. E. Sauer-Eriksson
Date :  30 Nov 15  (Deposition) - 16 Mar 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Binding Protein, Prfa, 2-Pyridones, Virulence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Good, C. Andersson, S. Hansen, J. Wall, K. S. Krishnan, A. Begum, C. Grundstrom, M. S. Niemiec, K. Vaitkevicius, E. Chorell, P. Wittung-Stafshede, U. H. Sauer, A. E. Sauer-Eriksson, F. Almqvist J. Johansson
Attenuating Listeria Monocytogenes Virulence By Targeting The Regulatory Protein Prfa.
Cell Chem Biol V. 23 404 2016
PubMed-ID: 26991105  |  Reference-DOI: 10.1016/J.CHEMBIOL.2016.02.013

(-) Compounds

Molecule 1 - LISTERIOLYSIN REGULATORY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PRFA, LMO0200
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Synonym: TRANSCRIPTION REGULATORY PROTEIN PRFA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
142O2Ligand/Ion(3~{R})-8-CYCLOPROPYL-7-(NAPHTHALEN-1-YLMETHYL)-5-OXIDANYLIDENE-2,3-DIHYDRO-[1,3]THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:61 , TYR A:62 , LYS A:64 , TYR A:126 , ILE A:149 , TRP A:224 , HOH A:412 , HOH A:413binding site for residue 42O A 301
2AC2SOFTWAREPHE A:134 , LEU B:60 , GLN B:61 , TYR B:62 , TYR B:126 , SER B:127 , LYS B:130 , PHE B:131 , SER B:142binding site for residue 42O B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F1R)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:65 -Ala A:66
2Gly B:65 -Ala B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F1R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F1R)

(-) Exons   (0, 0)

(no "Exon" information available for 5F1R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...eeeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee..hhhhhhhhh.hhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f1r A   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   ||  188       198       208       218       228         
                                                                                                                                                                                                       175|                                                      
                                                                                                                                                                                                        183                                                      


Chain B from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....eeee...eee.......eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhh.hhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f1r B   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   ||  188       198       208       218       228         
                                                                                                                                                                                                       175|                                                      
                                                                                                                                                                                                        183
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F1R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F1R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F1R)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRFA_LISMO | P22262: 1omi 2beo 2bgc 5lej 5lek 5lrr 5lrs

(-) Related Entries Specified in the PDB File

2beo 2BEO CONTAINS THE NATIVE PROTEIN