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2BGC
Biol. Unit 4
Info
Asym.Unit (324 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (81 KB)
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(1)
Title
:
PRFA-G145S, A CONSTITUTIVE ACTIVE MUTANT OF THE TRANSCRIPTIONAL REGULATOR IN L.MONOCYTOGENES
Authors
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
Date
:
20 Dec 04 (Deposition) - 14 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,D,E,F,G,H,I
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: F,G (1x)
Biol. Unit 4: H,I (1x)
Keywords
:
Bacterial Infection, Human Pathogen, Transcriptional Regulator, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
The Mutation G145S In Prfa, A Key Virulence Regulator Of Listeria Monocytogenes, Increases Dna-Binding Affinity By Stabilizing The Hth Motif
Mol. Microbiol. V. 56 433 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
2a: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-D... (DTUa)
3a: S,S-PROPYLTHIOCYSTEINE (PR3a)
3b: S,S-PROPYLTHIOCYSTEINE (PR3b)
3c: S,S-PROPYLTHIOCYSTEINE (PR3c)
3d: S,S-PROPYLTHIOCYSTEINE (PR3d)
3e: S,S-PROPYLTHIOCYSTEINE (PR3e)
3f: S,S-PROPYLTHIOCYSTEINE (PR3f)
3g: S,S-PROPYLTHIOCYSTEINE (PR3g)
3h: S,S-PROPYLTHIOCYSTEINE (PR3h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DTT
-1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
DTU
-1
Ligand/Ion
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3
PR3
2
Mod. Amino Acid
S,S-PROPYLTHIOCYSTEINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_PRFA_LISMO_001 (S145S, chain H/I, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PRFA_LISMO_001
*
G
145
S
PRFA_LISMO
---
---
H/I
S
145
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_CRP_2 (H:137-212,I:137-212)
2: HTH_CRP_1 (H:169-193,I:169-193)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
PRFA_LISMO
137-212
2
-
-
-
-
-
-
H:137-212
I:137-212
2
HTH_CRP_1
PS00042
Crp-type HTH domain signature.
PRFA_LISMO
169-193
2
-
-
-
-
-
-
H:169-193
I:169-193
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2bgca1 (A:138-237)
1b: SCOP_d2bgcb1 (B:138-237)
1c: SCOP_d2bgcd1 (D:138-237)
1d: SCOP_d2bgce1 (E:138-237)
1e: SCOP_d2bgcf1 (F:138-237)
1f: SCOP_d2bgcg1 (G:138-237)
1g: SCOP_d2bgch1 (H:138-235)
1h: SCOP_d2bgci1 (I:138-237)
2a: SCOP_d2bgca2 (A:3-137)
2b: SCOP_d2bgcb2 (B:1-137)
2c: SCOP_d2bgcd2 (D:3-137)
2d: SCOP_d2bgce2 (E:1-137)
2e: SCOP_d2bgcf2 (F:2-137)
2f: SCOP_d2bgcg2 (G:3-137)
2g: SCOP_d2bgch2 (H:3-137)
2h: SCOP_d2bgci2 (I:2-137)
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Protein Domains
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)
(
)
Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
CAP C-terminal domain-like
(39)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
1a
d2bgca1
A:138-237
1b
d2bgcb1
B:138-237
1c
d2bgcd1
D:138-237
1d
d2bgce1
E:138-237
1e
d2bgcf1
F:138-237
1f
d2bgcg1
G:138-237
1g
d2bgch1
H:138-235
1h
d2bgci1
I:138-237
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
Listeriolysin regulatory protein PrfA, N-terminal domain
(3)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
2a
d2bgca2
A:3-137
2b
d2bgcb2
B:1-137
2c
d2bgcd2
D:3-137
2d
d2bgce2
E:1-137
2e
d2bgcf2
F:2-137
2f
d2bgcg2
G:3-137
2g
d2bgch2
H:3-137
2h
d2bgci2
I:2-137
[
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]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2bgcH02 (H:137-235)
1b: CATH_2bgcD02 (D:137-237)
1c: CATH_2bgcA02 (A:137-237)
1d: CATH_2bgcB02 (B:137-237)
1e: CATH_2bgcE02 (E:137-237)
1f: CATH_2bgcF02 (F:137-237)
1g: CATH_2bgcG02 (G:137-237)
1h: CATH_2bgcI02 (I:137-237)
2a: CATH_2bgcB01 (B:1-109)
2b: CATH_2bgcE01 (E:1-109)
2c: CATH_2bgcF01 (F:2-109)
2d: CATH_2bgcI01 (I:2-109)
2e: CATH_2bgcA01 (A:3-109)
2f: CATH_2bgcD01 (D:3-109)
2g: CATH_2bgcG01 (G:3-109)
2h: CATH_2bgcH01 (H:3-109)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
1a
2bgcH02
H:137-235
1b
2bgcD02
D:137-237
1c
2bgcA02
A:137-237
1d
2bgcB02
B:137-237
1e
2bgcE02
E:137-237
1f
2bgcF02
F:137-237
1g
2bgcG02
G:137-237
1h
2bgcI02
I:137-237
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
2a
2bgcB01
B:1-109
2b
2bgcE01
E:1-109
2c
2bgcF01
F:2-109
2d
2bgcI01
I:2-109
2e
2bgcA01
A:3-109
2f
2bgcD01
D:3-109
2g
2bgcG01
G:3-109
2h
2bgcH01
H:3-109
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Pfam Domains
(0, 0)
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all PFAM domains
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