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(-) Description

Title :  THE TRANSCRIPTIONAL REGULATOR PRFA FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH GLUTATHIONE AND A 30-BP OPERATOR PRFA-BOX MOTIF
 
Authors :  M. Hall, C. Grundstrom, A. Begum, M. Lindberg, U. H. Sauer, F. Almqvist, J. Johansson, A. E. Sauer-Eriksson
Date :  19 Aug 16  (Deposition) - 07 Dec 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transcription Regulator, Dna Binding, Activation, Glutathione, Listeria Monocytogenes, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Hall, C. Grundstrom, A. Begum, M. J. Lindberg, U. H. Sauer, F. Almqvist, J. Johansson, A. E. Sauer-Eriksson
Structural Basis For Glutathione-Mediated Activation Of The Virulence Regulatory Protein Prfa In Listeria.
Proc. Natl. Acad. Sci. V. 113 14733 2016 U. S. A.
PubMed-ID: 27930316  |  Reference-DOI: 10.1073/PNAS.1614028114

(-) Compounds

Molecule 1 - LISTERIOLYSIN POSITIVE REGULATORY FACTOR A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PRFA, M643_11230
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639
    Synonym: LISTERIOLYSIN POSITIVE REGULATORY PROTEIN,LISTERIOLYSIN REGULATORY PROTEIN,PLEITROPHIC REGULATORY FACTOR A,POSITIVE REGULATORY FACTOR A,PRFA
 
Molecule 2 - DNA (30-MER)
    Chains: C
    Engineered: YES
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639
    Synthetic: YES
 
Molecule 3 - DNA (30-MER)
    Chains: D
    Engineered: YES
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:61 , TYR A:62 , TYR A:63 , LYS A:64 , GLY A:65 , ALA A:66 , PHE A:67 , LYS A:122 , GLN A:123 , TYR A:126 , ILE A:149 , TYR A:154 , TRP A:224 , CYS A:229 , HOH A:402 , HOH A:405binding site for residue GSH A 301
2AC2SOFTWAREGLN B:61 , TYR B:62 , TYR B:63 , LYS B:64 , ALA B:66 , PHE B:67 , TYR B:126 , ILE B:149 , CYS B:229 , HOH B:402 , HOH B:403binding site for residue GSH B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LRS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:65 -Ala A:66
2Gly B:65 -Ala B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LRS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LRS)

(-) Exons   (0, 0)

(no "Exon" information available for 5LRS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh....eeee..............eeeeee.eeeeeee.....eeeeeeee....ee.............eeee...eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee.....hhhhhhhhh...hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lrs A   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      


Chain B from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....eeee.............eeeeeee.eeeeeee.....eeeeeeee....ee.............eeee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee.....hhhhhhhhh...hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lrs B   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      


Chain C from PDB  Type:DNA  Length:30
                                                              
                 5lrs C -15 TTGAGGCATTAACATTTGTTAACGACGATA  15
                                    -6    ||   5        15
                                         -1|              
                                           1              


Chain D from PDB  Type:DNA  Length:30
                                                              
                 5lrs D -15 TATCGTCGTTAACAAATGTTAATGCCTCAA  15
                                    -6    ||   5        15
                                         -1|              
                                           1
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LRS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LRS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LRS)

(-) Gene Ontology  (7, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRFA_LISMO | P22262: 1omi 2beo 2bgc 5f1r 5lej 5lek 5lrr
        Q4TVQ0_LISMN | Q4TVQ0: 5lrr 5x6d 5x6e

(-) Related Entries Specified in the PDB File

2beo 2BEO CONTAINS THE NATIVE PROTEIN