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2BGC
Asym. Unit
Info
Asym.Unit (324 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (81 KB)
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(1)
Title
:
PRFA-G145S, A CONSTITUTIVE ACTIVE MUTANT OF THE TRANSCRIPTIONAL REGULATOR IN L.MONOCYTOGENES
Authors
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
Date
:
20 Dec 04 (Deposition) - 14 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,D,E,F,G,H,I
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: F,G (1x)
Biol. Unit 4: H,I (1x)
Keywords
:
Bacterial Infection, Human Pathogen, Transcriptional Regulator, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Eiting, G. Hagelueken, W. -D. Schubert, D. W. Heinz
The Mutation G145S In Prfa, A Key Virulence Regulator Of Listeria Monocytogenes, Increases Dna-Binding Affinity By Stabilizing The Hth Motif
Mol. Microbiol. V. 56 433 2005
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
2a: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-D... (DTUa)
3a: S,S-PROPYLTHIOCYSTEINE (PR3a)
3b: S,S-PROPYLTHIOCYSTEINE (PR3b)
3c: S,S-PROPYLTHIOCYSTEINE (PR3c)
3d: S,S-PROPYLTHIOCYSTEINE (PR3d)
3e: S,S-PROPYLTHIOCYSTEINE (PR3e)
3f: S,S-PROPYLTHIOCYSTEINE (PR3f)
3g: S,S-PROPYLTHIOCYSTEINE (PR3g)
3h: S,S-PROPYLTHIOCYSTEINE (PR3h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
2
DTU
1
Ligand/Ion
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
3
PR3
8
Mod. Amino Acid
S,S-PROPYLTHIOCYSTEINE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:61 , TYR A:62 , LYS A:64 , PHE A:67 , TRP A:224
BINDING SITE FOR RESIDUE DTU A1238
2
AC2
SOFTWARE
GLN F:61 , LYS F:64 , PHE F:67 , TYR F:126 , TRP F:224
BINDING SITE FOR RESIDUE DTT F1238
[
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SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PRFA_LISMO_001 (S145S, chain A/B/D/E/F/G/H/I, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PRFA_LISMO_001
*
G
145
S
PRFA_LISMO
---
---
A/B/D/E/F/G/H/I
S
145
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: HTH_CRP_2 (A:137-212,B:137-212,D:137-212,E:13...)
2: HTH_CRP_1 (A:169-193,B:169-193,D:169-193,E:16...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
PRFA_LISMO
137-212
8
A:137-212
B:137-212
D:137-212
E:137-212
F:137-212
G:137-212
H:137-212
I:137-212
2
HTH_CRP_1
PS00042
Crp-type HTH domain signature.
PRFA_LISMO
169-193
8
A:169-193
B:169-193
D:169-193
E:169-193
F:169-193
G:169-193
H:169-193
I:169-193
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2bgca1 (A:138-237)
1b: SCOP_d2bgcb1 (B:138-237)
1c: SCOP_d2bgcd1 (D:138-237)
1d: SCOP_d2bgce1 (E:138-237)
1e: SCOP_d2bgcf1 (F:138-237)
1f: SCOP_d2bgcg1 (G:138-237)
1g: SCOP_d2bgch1 (H:138-235)
1h: SCOP_d2bgci1 (I:138-237)
2a: SCOP_d2bgca2 (A:3-137)
2b: SCOP_d2bgcb2 (B:1-137)
2c: SCOP_d2bgcd2 (D:3-137)
2d: SCOP_d2bgce2 (E:1-137)
2e: SCOP_d2bgcf2 (F:2-137)
2f: SCOP_d2bgcg2 (G:3-137)
2g: SCOP_d2bgch2 (H:3-137)
2h: SCOP_d2bgci2 (I:2-137)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
CAP C-terminal domain-like
(39)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
1a
d2bgca1
A:138-237
1b
d2bgcb1
B:138-237
1c
d2bgcd1
D:138-237
1d
d2bgce1
E:138-237
1e
d2bgcf1
F:138-237
1f
d2bgcg1
G:138-237
1g
d2bgch1
H:138-235
1h
d2bgci1
I:138-237
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
cAMP-binding domain-like
(99)
Family
:
Listeriolysin regulatory protein PrfA, N-terminal domain
(3)
Protein domain
:
automated matches
(2)
Listeria monocytogenes [TaxId: 169963]
(2)
2a
d2bgca2
A:3-137
2b
d2bgcb2
B:1-137
2c
d2bgcd2
D:3-137
2d
d2bgce2
E:1-137
2e
d2bgcf2
F:2-137
2f
d2bgcg2
G:3-137
2g
d2bgch2
H:3-137
2h
d2bgci2
I:2-137
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2bgcH02 (H:137-235)
1b: CATH_2bgcD02 (D:137-237)
1c: CATH_2bgcA02 (A:137-237)
1d: CATH_2bgcB02 (B:137-237)
1e: CATH_2bgcE02 (E:137-237)
1f: CATH_2bgcF02 (F:137-237)
1g: CATH_2bgcG02 (G:137-237)
1h: CATH_2bgcI02 (I:137-237)
2a: CATH_2bgcB01 (B:1-109)
2b: CATH_2bgcE01 (E:1-109)
2c: CATH_2bgcF01 (F:2-109)
2d: CATH_2bgcI01 (I:2-109)
2e: CATH_2bgcA01 (A:3-109)
2f: CATH_2bgcD01 (D:3-109)
2g: CATH_2bgcG01 (G:3-109)
2h: CATH_2bgcH01 (H:3-109)
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Organisms
(
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
1a
2bgcH02
H:137-235
1b
2bgcD02
D:137-237
1c
2bgcA02
A:137-237
1d
2bgcB02
B:137-237
1e
2bgcE02
E:137-237
1f
2bgcF02
F:137-237
1g
2bgcG02
G:137-237
1h
2bgcI02
I:137-237
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e.
(2)
2a
2bgcB01
B:1-109
2b
2bgcE01
E:1-109
2c
2bgcF01
F:2-109
2d
2bgcI01
I:2-109
2e
2bgcA01
A:3-109
2f
2bgcD01
D:3-109
2g
2bgcG01
G:3-109
2h
2bgcH01
H:3-109
[
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Pfam Domains
(0, 0)
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all PFAM domains
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