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(-) Description

Title :  THE TRANSCRIPTIONAL REGULATOR PRFA-G145S MUTANT FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH A 30-BP OPERATOR PRFA-BOX MOTIF
 
Authors :  M. Hall, C. Grundstrom, A. Begum, M. Lindberg, U. H. Sauer, F. Almqvist, J. Johansson, A. E. Sauer-Eriksson
Date :  29 Jun 16  (Deposition) - 07 Dec 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transcription Regulator, Dna Binding, Activation, Listeria Monocytogenes, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Hall, C. Grundstrom, A. Begum, M. J. Lindberg, U. H. Sauer, F. Almqvist, J. Johansson, A. E. Sauer-Eriksson
Structural Basis For Glutathione-Mediated Activation Of The Virulence Regulatory Protein Prfa In Listeria.
Proc. Natl. Acad. Sci. V. 113 14733 2016 U. S. A.
PubMed-ID: 27930316  |  Reference-DOI: 10.1073/PNAS.1614028114

(-) Compounds

Molecule 1 - LISTERIOLYSIN REGULATORY PROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GenePRFA, LMO0200
    Organism ScientificLISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid169963
 
Molecule 2 - DNA (30-MER)
    ChainsC
    EngineeredYES
    Organism ScientificLISTERIA MONOCYTOGENES
    Organism Taxid1639
    SyntheticYES
 
Molecule 3 - DNA (30-MER)
    ChainsD
    EngineeredYES
    Organism ScientificLISTERIA MONOCYTOGENES
    Organism Taxid1639
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5LEK)

(-) Sites  (0, 0)

(no "Site" information available for 5LEK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LEK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:65 -Ala A:66
2Gly B:65 -Ala B:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LEK)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5LEK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh......eeee.............eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee.....hhhhhhhhhh..hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lek A   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      

Chain B from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....eeee.............eeeeeee.eeeeeee.....eeeeeeee..eeee.............eeee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee.....hhhhhhhhhh..hhhhhhhhhhhhhhh..eehhhhh.ee.hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lek B   2 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN 237
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      

Chain C from PDB  Type:DNA  Length:30
                                                              
                 5lek C -15 TTGAGGCATTAACATTTGTTAACGACGATA  15
                                    -6    ||   5        15
                                         -1|              
                                           1              

Chain D from PDB  Type:DNA  Length:30
                                                              
                 5lek D -15 TATCGTCGTTAACAAATGTTAATGCCTCAA  15
                                    -6    ||   5        15
                                         -1|              
                                           1              

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LEK)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LEK)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:65 - Ala A:66   [ RasMol ]  
    Gly B:65 - Ala B:66   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRFA_LISMO | P222621omi 2beo 2bgc 5f1r 5lej 5lrr 5lrs

(-) Related Entries Specified in the PDB File

2beo 2BEO CONTAINS THE NATIVE PROTEIN