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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FILAMIN A REPEAT 21 COMPLEXED WITH THE INTEGRIN BETA2 CYTOPLASMIC TAIL PEPTIDE
 
Authors :  T. Kiema, J. Ylanne
Date :  25 Jan 07  (Deposition) - 05 Feb 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,T
Biol. Unit 1:  A,T  (3x)
Keywords :  Actin-Binding, Cell Adhesion, Transmembrane, Acetylation, Polymorphism, Cytoskeleton, Glycoprotein, Filamin, Complex, Membrane, Integrin, Receptor, Pyrrolidone Carboxylic Acid, Phosphorylation, Disease Mutation, Immunoglobulin Like (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Takala, E. Nurminen, S. M. Nurmi, M. Aatonen, T. Strandin, M. Takatalo, T. Kiema, C. G. Gahmberg, J. Ylanne, S. C. Fagerholm
Beta2 Integrin Phosphorylation On Thr758 Acts As A Molecular Switch To Regulate 14-3-3 And Filamin Binding.
Blood V. 112 1853 2008
PubMed-ID: 18550856  |  Reference-DOI: 10.1182/BLOOD-2007-12-127795

(-) Compounds

Molecule 1 - FILAMIN-A
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX4T-3
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentIG 21, RESIDUES 2236-2329
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALPHA-FILAMIN, FILAMIN-1, ENDOTHELIAL ACTIN-BINDING PROTEIN, ACTIN-BINDING PROTEIN 280, ABP-280, NONMUSCLE FILAMIN
 
Molecule 2 - INTEGRIN BETA-2 SUBUNIT
    ChainsT
    FragmentRESIDUES 735-769
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCELL SURFACE ADHESION GLYCOPROTEINS LFA-1/CR3/P150,95 SUBUNIT BETA, COMPLEMENT RECEPTOR C3 SUBUNIT BETA, CD18 ANTIGEN
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AT
Biological Unit 1 (3x)AT

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:2003 , HOH A:2004 , ALA A:2243 , GLY A:2244 , GLY A:2245 , GLU A:2249 , PHE A:2321BINDING SITE FOR RESIDUE GOL A3329

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JF1)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:2319 -Pro A:2320

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JF1)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNA_HUMAN276-374
376-474
475-570
571-663
667-763
764-866
867-965
966-1061
1062-1154
1155-1249
1250-1349
1350-1442
1443-1539
1540-1636
1649-1740
1779-1860
1860-1952
1950-2039
2042-2134
2132-2230
2233-2325
2327-2420
2424-2516
2552-2646
  1-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:2327-2328
-
-
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.FLNA_HUMAN276-374
376-474
475-570
571-663
667-763
764-866
867-965
966-1061
1062-1154
1155-1249
1250-1349
1350-1442
1443-1539
1540-1636
1649-1740
1779-1860
1860-1952
1950-2039
2042-2134
2132-2230
2233-2325
2327-2420
2424-2516
2552-2646
  3-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:2327-2328
-
-

(-) Exons   (4, 4)

Asymmetric Unit (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000003551532bENSE00001430780chr21:46348753-46348569185ITB2_HUMAN-00--
1.7bENST000003551537bENSE00002161928chr21:46330700-4633064061ITB2_HUMAN1-20200--
1.7iENST000003551537iENSE00002166383chr21:46330287-4633019989ITB2_HUMAN20-49300--
1.10cENST0000035515310cENSE00001050919chr21:46327010-46326830181ITB2_HUMAN50-110610--
1.11eENST0000035515311eENSE00002202060chr21:46323450-46323280171ITB2_HUMAN110-167580--
1.12bENST0000035515312bENSE00001050930chr21:46321648-46321407242ITB2_HUMAN167-247810--
1.13ENST0000035515313ENSE00001314546chr21:46320390-46320235156ITB2_HUMAN248-299520--
1.14ENST0000035515314ENSE00002181070chr21:46319077-4631898296ITB2_HUMAN300-331320--
1.15aENST0000035515315aENSE00001280312chr21:46314975-4631488690ITB2_HUMAN332-361300--
1.15dENST0000035515315dENSE00001280354chr21:46313459-46313319141ITB2_HUMAN362-408470--
1.16ENST0000035515316ENSE00001280307chr21:46311911-46311724188ITB2_HUMAN409-471630--
1.17ENST0000035515317ENSE00001280195chr21:46310137-46309893245ITB2_HUMAN471-553830--
1.18ENST0000035515318ENSE00001280299chr21:46309410-46309191220ITB2_HUMAN553-626740--
1.19bENST0000035515319bENSE00001050945chr21:46308810-46308608203ITB2_HUMAN626-694690--
1.20ENST0000035515320ENSE00001280183chr21:46306817-46306651167ITB2_HUMAN694-749560--
1.21cENST0000035515321cENSE00001280374chr21:46306345-46305868478ITB2_HUMAN750-769201T:753-76311

2.1bENST000003698501bENSE00001910769X:153602994-153602874121FLNA_HUMAN-00--
2.2aENST000003698502aENSE00001451045X:153599729-153599241489FLNA_HUMAN1-1251250--
2.3ENST000003698503ENSE00001761667X:153596458-153596210249FLNA_HUMAN125-208840--
2.4ENST000003698504ENSE00001600780X:153596106-15359600998FLNA_HUMAN208-240330--
2.5ENST000003698505ENSE00001593508X:153595912-153595765148FLNA_HUMAN241-290500--
2.6ENST000003698506ENSE00001766993X:153595218-153595100119FLNA_HUMAN290-329400--
2.7ENST000003698507ENSE00001785883X:153595007-15359493078FLNA_HUMAN330-355260--
2.8ENST000003698508ENSE00001609326X:153594838-153594676163FLNA_HUMAN356-410550--
2.9ENST000003698509ENSE00001666330X:153594592-153594392201FLNA_HUMAN410-477680--
2.10ENST0000036985010ENSE00001801647X:153593854-153593717138FLNA_HUMAN477-523470--
2.11aENST0000036985011aENSE00001611867X:153593627-153593504124FLNA_HUMAN523-564420--
2.12aENST0000036985012aENSE00001667367X:153593325-153593189137FLNA_HUMAN564-610470--
2.12cENST0000036985012cENSE00001629480X:153593087-153592894194FLNA_HUMAN610-674650--
2.13ENST0000036985013ENSE00001779880X:153592740-153592627114FLNA_HUMAN675-712380--
2.14ENST0000036985014ENSE00001608264X:153592533-153592390144FLNA_HUMAN713-760480--
2.15ENST0000036985015ENSE00001763171X:153591152-153591029124FLNA_HUMAN761-802420--
2.16ENST0000036985016ENSE00001721592X:153590946-153590786161FLNA_HUMAN802-855540--
2.17ENST0000036985017ENSE00001711674X:153590700-15359061091FLNA_HUMAN856-886310--
2.18ENST0000036985018ENSE00001671781X:153590516-153590347170FLNA_HUMAN886-942570--
2.19ENST0000036985019ENSE00001747813X:153590155-153590038118FLNA_HUMAN943-982400--
2.20ENST0000036985020ENSE00001730581X:153589938-153589676263FLNA_HUMAN982-1069880--
2.21aENST0000036985021aENSE00001650468X:153588955-153588358598FLNA_HUMAN1070-12692000--
2.22ENST0000036985022ENSE00001799214X:153588273-153588100174FLNA_HUMAN1269-1327590--
2.23aENST0000036985023aENSE00001747211X:153588014-153587852163FLNA_HUMAN1327-1381550--
2.24ENST0000036985024ENSE00001776303X:153587774-153587614161FLNA_HUMAN1381-1435550--
2.25ENST0000036985025ENSE00001730699X:153587522-153587352171FLNA_HUMAN1435-1492580--
2.26bENST0000036985026bENSE00001594409X:153586936-153586813124FLNA_HUMAN1492-1533420--
2.27ENST0000036985027ENSE00001770199X:153586723-153586567157FLNA_HUMAN1533-1585530--
2.28bENST0000036985028bENSE00001690672X:153585991-153585802190FLNA_HUMAN1586-1649640--
2.29ENST0000036985029ENSE00001616004X:153585642-15358561924FLNA_HUMAN1649-165790--
2.30aENST0000036985030aENSE00001716324X:153583440-153583193248FLNA_HUMAN1657-1739830--
2.31aENST0000036985031aENSE00001764396X:153583079-15358298496FLNA_HUMAN1740-1771320--
2.32ENST0000036985032ENSE00001736547X:153582851-153582749103FLNA_HUMAN1772-1806350--
2.33aENST0000036985033aENSE00001766949X:153582659-153582519141FLNA_HUMAN1806-1853480--
2.33cENST0000036985033cENSE00001653383X:153582411-153582283129FLNA_HUMAN1853-1896440--
2.34aENST0000036985034aENSE00001618870X:153582095-153581922174FLNA_HUMAN1896-1954590--
2.35bENST0000036985035bENSE00002195079X:153581825-153581664162FLNA_HUMAN1954-2008550--
2.36bENST0000036985036bENSE00001723855X:153581572-153581369204FLNA_HUMAN2008-2076690--
2.36eENST0000036985036eENSE00001619614X:153581292-153581140153FLNA_HUMAN2076-2127520--
2.36hENST0000036985036hENSE00001651775X:153581043-153580921123FLNA_HUMAN2127-2168420--
2.37ENST0000036985037ENSE00001674826X:153580815-153580549267FLNA_HUMAN2168-2257901A:2237-225721
2.38aENST0000036985038aENSE00001618637X:153580389-153580252138FLNA_HUMAN2257-2303471A:2257-2303 (gaps)47
2.39aENST0000036985039aENSE00002154533X:153580064-153579949116FLNA_HUMAN2303-2341391A:2303-232826
2.39dENST0000036985039dENSE00001796872X:153579409-153579277133FLNA_HUMAN2342-2386450--
2.39fENST0000036985039fENSE00001667055X:153578575-153578399177FLNA_HUMAN2386-2445600--
2.39gENST0000036985039gENSE00001781401X:153578235-153578017219FLNA_HUMAN2445-2518740--
2.40ENST0000036985040ENSE00001665083X:153577933-153577730204FLNA_HUMAN2518-2586690--
2.41dENST0000036985041dENSE00001866943X:153577404-153577016389FLNA_HUMAN2586-2647620--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with FLNA_HUMAN | P21333 from UniProtKB/Swiss-Prot  Length:2647

    Alignment length:92
                                  2246      2256      2266      2276      2286      2296      2306      2316      2326  
          FLNA_HUMAN   2237 GAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
               SCOP domains d2jf1a_ A: automated matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Filamin-2jf1A01 A:2237-2322                                                           ------ Pfam domains
         Sec.struct. author hhhhheeehhhhh.ee....eeeeee......eeeeeeeee...eeeeee-----.eeeeeee...eeeeeeeee..ee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FILAMIN_REPEAT  PDB: - UniProt: 2233-2325                                                -FI PROSITE
           Transcript 2 (1) Exon 2.37            ---------------------------------------------Exon 2.39a [INCOMPLETE]    Transcript 2 (1)
           Transcript 2 (2) --------------------Exon 2.38a  PDB: A:2257-2303 (gaps)            ------------------------- Transcript 2 (2)
                2jf1 A 2237 GAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFE-----SCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP 2328
                                  2246      2256      2266      2276      2286     |2296      2306      2316      2326  
                                                                          2286  2292                                    

Chain T from PDB  Type:PROTEIN  Length:11
 aligned with ITB2_HUMAN | P05107 from UniProtKB/Swiss-Prot  Length:769

    Alignment length:11
                                   762 
          ITB2_HUMAN    753 LFKSATTTVMN  763
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains Integrin_b_ Pfam domains
         Sec.struct. author .eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
               Transcript 1 Exon 1.21c  Transcript 1
                2jf1 T  753 LFKSATTTVMN  763
                                   762 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JF1)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: E-set (290)

(-) Gene Ontology  (105, 111)

Asymmetric Unit(hide GO term definitions)
Chain A   (FLNA_HUMAN | P21333)
molecular function
    GO:0034988    Fc-gamma receptor I complex binding    Interacting selectively and non-covalently with one or more specific sites on the Fc-gamma receptor I complex. The complex functions primarily as an activating receptor for IgG.
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0051020    GTPase binding    Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
    GO:0048365    Rac GTPase binding    Interacting selectively and non-covalently with Rac protein, any member of the Rac subfamily of the Ras superfamily of monomeric GTPases.
    GO:0017160    Ral GTPase binding    Interacting selectively and non-covalently with Ral protein, any member of the Ral subfamily of the Ras superfamily of monomeric GTPases.
    GO:0017048    Rho GTPase binding    Interacting selectively and non-covalently with Rho protein, any member of the Rho subfamily of the Ras superfamily of monomeric GTPases. Proteins in the Rho subfamily are involved in relaying signals from cell-surface receptors to the actin cytoskeleton.
    GO:0046332    SMAD binding    Interacting selectively and non-covalently with a SMAD signaling protein.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0031852    mu-type opioid receptor binding    Interacting selectively and non-covalently with a mu-type opioid receptor.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0031267    small GTPase binding    Interacting selectively and non-covalently with a small monomeric GTPase.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0051764    actin crosslink formation    The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes.
    GO:0031532    actin cytoskeleton reorganization    A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0007195    adenylate cyclase-inhibiting dopamine receptor signaling pathway    The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with inhibition of adenylyl cyclase and a subsequent decrease in the concentration of cyclic AMP (cAMP).
    GO:0034329    cell junction assembly    A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction.
    GO:0030030    cell projection organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0051220    cytoplasmic sequestering of protein    The selective interaction of a protein with specific molecules in the cytoplasm, thereby inhibiting its transport into other areas of the cell.
    GO:0045184    establishment of protein localization    The directed movement of a protein to a specific location.
    GO:0042789    mRNA transcription from RNA polymerase II promoter    The cellular synthesis of messenger RNA (mRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
    GO:0090307    mitotic spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0042177    negative regulation of protein catabolic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0043433    negative regulation of sequence-specific DNA binding transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0016479    negative regulation of transcription from RNA polymerase I promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase I promoter.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0070527    platelet aggregation    The adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:2001046    positive regulation of integrin-mediated signaling pathway    Any process that activates or increases the frequency, rate or extent of integrin-mediated signaling pathway.
    GO:1900026    positive regulation of substrate adhesion-dependent cell spreading    Any process that activates or increases the frequency, rate or extent of substrate adhesion-dependent cell spreading.
    GO:0042993    positive regulation of transcription factor import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.
    GO:0034394    protein localization to cell surface    A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane.
    GO:0050821    protein stabilization    Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation.
    GO:0043113    receptor clustering    The receptor metabolic process that results in grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
    GO:0071526    semaphorin-plexin signaling pathway    A series of molecular signals generated as a consequence of a semaphorin receptor (composed of a plexin and a neurophilin) binding to a semaphorin ligand.
    GO:0044319    wound healing, spreading of cells    The migration of a cell along or through a wound gap that contributes to the reestablishment of a continuous surface.
cellular component
    GO:0031523    Myb complex    A multisubunit complex consisting of Myb and other proteins that regulates site specific DNA replication, gene amplification and transcriptional repression.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005884    actin filament    A filamentous structure formed of a two-stranded helical polymer of the protein actin and associated proteins. Actin filaments are a major component of the contractile apparatus of skeletal muscle and the microfilaments of the cytoskeleton of eukaryotic cells. The filaments, comprising polymerized globular actin molecules, appear as flexible structures with a diameter of 5-9 nm. They are organized into a variety of linear bundles, two-dimensional networks, and three dimensional gels. In the cytoskeleton they are most highly concentrated in the cortex of the cell just beneath the plasma membrane.
    GO:0097440    apical dendrite    A dendrite that emerges near the apical pole of a neuron. In bipolar neurons, apical dendrites are located on the opposite side of the soma from the axon.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005911    cell-cell junction    A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
    GO:0030863    cortical cytoskeleton    The portion of the cytoskeleton that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0043198    dendritic shaft    Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0031941    filamentous actin    A two-stranded helical polymer of the protein actin.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

Chain T   (ITB2_HUMAN | P05107)
molecular function
    GO:0030369    ICAM-3 receptor activity    Combining with ICAM-3, intercellular adhesion molecule 3, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. ICAM-3, or CD50, are constitutively expressed on monocytes, granulocytes and lymphocytes; on physiological stimulation, they become transiently phosphorylated on serine residues.
    GO:0050839    cell adhesion molecule binding    Interacting selectively and non-covalently with a cell adhesion molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0007160    cell-matrix adhesion    The binding of a cell to the extracellular matrix via adhesion molecules.
    GO:0045123    cellular extravasation    The migration of a leukocyte from the blood vessels into the surrounding tissue.
    GO:0071404    cellular response to low-density lipoprotein particle stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low-density lipoprotein particle stimulus.
    GO:0035987    endodermal cell differentiation    The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.
    GO:0043542    endothelial cell migration    The orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0034113    heterotypic cell-cell adhesion    The attachment of a cell to a cell of a different type via adhesion molecules.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0007229    integrin-mediated signaling pathway    A series of molecular signals initiated by the binding of extracellular ligand to an integrin on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0007159    leukocyte cell-cell adhesion    The attachment of a leukocyte to another cell via adhesion molecules.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0002523    leukocyte migration involved in inflammatory response    The movement of a leukocyte within or between different tissues and organs of the body contributing to an inflammatory response.
    GO:0030101    natural killer cell activation    The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor.
    GO:0030593    neutrophil chemotaxis    The directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0045429    positive regulation of nitric oxide biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
    GO:0043113    receptor clustering    The receptor metabolic process that results in grouping of a set of receptors at a cellular location, often to amplify the sensitivity of a signaling response.
    GO:0031623    receptor internalization    A receptor-mediated endocytosis process that results in the movement of receptors from the plasma membrane to the inside of the cell. The process begins when cell surface receptors are monoubiquitinated following ligand-induced activation. Receptors are subsequently taken up into endocytic vesicles from where they are either targeted to the lysosome or vacuole for degradation or recycled back to the plasma membrane.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0050776    regulation of immune response    Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.
    GO:0050730    regulation of peptidyl-tyrosine phosphorylation    Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine.
    GO:0016337    single organismal cell-cell adhesion    The attachment of one cell to another cell via adhesion molecules, where both cells are part of the same organism.
    GO:0034142    toll-like receptor 4 signaling pathway    Any series of molecular signals generated as a consequence of binding to toll-like receptor 4.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:1903561    extracellular vesicle    Any vesicle that is part of the extracellular region.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0034687    integrin alphaL-beta2 complex    An integrin complex that comprises one alphaL subunit and one beta2 subunit.
    GO:0008305    integrin complex    A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0030141    secretory granule    A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLNA_HUMAN | P213332aav 2bp3 2brq 2j3s 2k3t 2k7p 2k7q 2mtp 2w0p 2wfn 3cnk 3hoc 3hop 3hor 3isw 3rgh 4m9p 4p3w
        ITB2_HUMAN | P051071jx3 1l3y 1yuk 2p26 2p28 2v7d 3k6s 3k71 3k72 4neh 4nen 5e6r 5e6s 5e6u 5e6v 5e6w 5e6x 5es4

(-) Related Entries Specified in the PDB File

1jx3 THEORETICAL MODEL OF THE INTEGRIN BETA2 I- LIKE DOMAIN
1l3y INTEGRIN EGF-LIKE MODULE 3 FROM THE BETA- 2 SUBUNIT
1yuk THE CRYSTAL STRUCTURE OF THE PSI/HYBRID DOMAIN/ I-EGF1SEGMENT FROM THE HUMAN INTEGRIN BETA2 AT 1.8 RESOLUTION