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2JF1
Asym. Unit
Info
Asym.Unit (22 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FILAMIN A REPEAT 21 COMPLEXED WITH THE INTEGRIN BETA2 CYTOPLASMIC TAIL PEPTIDE
Authors
:
T. Kiema, J. Ylanne
Date
:
25 Jan 07 (Deposition) - 05 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,T
Biol. Unit 1: A,T (3x)
Keywords
:
Actin-Binding, Cell Adhesion, Transmembrane, Acetylation, Polymorphism, Cytoskeleton, Glycoprotein, Filamin, Complex, Membrane, Integrin, Receptor, Pyrrolidone Carboxylic Acid, Phosphorylation, Disease Mutation, Immunoglobulin Like
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Takala, E. Nurminen, S. M. Nurmi, M. Aatonen, T. Strandin, M. Takatalo, T. Kiema, C. G. Gahmberg, J. Ylanne, S. C. Fagerholm
Beta2 Integrin Phosphorylation On Thr758 Acts As A Molecular Switch To Regulate 14-3-3 And Filamin Binding.
Blood V. 112 1853 2008
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:2003 , HOH A:2004 , ALA A:2243 , GLY A:2244 , GLY A:2245 , GLU A:2249 , PHE A:2321
BINDING SITE FOR RESIDUE GOL A3329
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FILAMIN_REPEAT (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FILAMIN_REPEAT
PS50194
Filamin/ABP280 repeat profile.
FLNA_HUMAN
276-374
376-474
475-570
571-663
667-763
764-866
867-965
966-1061
1062-1154
1155-1249
1250-1349
1350-1442
1443-1539
1540-1636
1649-1740
1779-1860
1860-1952
1950-2039
2042-2134
2132-2230
2233-2325
2327-2420
2424-2516
2552-2646
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:2327-2328
-
-
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.21c (T:753-763)
Exon 2.37 (A:2237-2257)
Exon 2.38a (A:2257-2303 (gaps))
Exon 2.39a (A:2303-2328)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.20/1.21c
2: Boundary 1.21c/-
3: Boundary 2.36h/2.37
4: Boundary 2.37/2.38a
5: Boundary 2.38a/2.39a
6: Boundary 2.39a/2.39d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000355153
2b
ENSE00001430780
chr21:
46348753-46348569
185
ITB2_HUMAN
-
0
0
-
-
1.7b
ENST00000355153
7b
ENSE00002161928
chr21:
46330700-46330640
61
ITB2_HUMAN
1-20
20
0
-
-
1.7i
ENST00000355153
7i
ENSE00002166383
chr21:
46330287-46330199
89
ITB2_HUMAN
20-49
30
0
-
-
1.10c
ENST00000355153
10c
ENSE00001050919
chr21:
46327010-46326830
181
ITB2_HUMAN
50-110
61
0
-
-
1.11e
ENST00000355153
11e
ENSE00002202060
chr21:
46323450-46323280
171
ITB2_HUMAN
110-167
58
0
-
-
1.12b
ENST00000355153
12b
ENSE00001050930
chr21:
46321648-46321407
242
ITB2_HUMAN
167-247
81
0
-
-
1.13
ENST00000355153
13
ENSE00001314546
chr21:
46320390-46320235
156
ITB2_HUMAN
248-299
52
0
-
-
1.14
ENST00000355153
14
ENSE00002181070
chr21:
46319077-46318982
96
ITB2_HUMAN
300-331
32
0
-
-
1.15a
ENST00000355153
15a
ENSE00001280312
chr21:
46314975-46314886
90
ITB2_HUMAN
332-361
30
0
-
-
1.15d
ENST00000355153
15d
ENSE00001280354
chr21:
46313459-46313319
141
ITB2_HUMAN
362-408
47
0
-
-
1.16
ENST00000355153
16
ENSE00001280307
chr21:
46311911-46311724
188
ITB2_HUMAN
409-471
63
0
-
-
1.17
ENST00000355153
17
ENSE00001280195
chr21:
46310137-46309893
245
ITB2_HUMAN
471-553
83
0
-
-
1.18
ENST00000355153
18
ENSE00001280299
chr21:
46309410-46309191
220
ITB2_HUMAN
553-626
74
0
-
-
1.19b
ENST00000355153
19b
ENSE00001050945
chr21:
46308810-46308608
203
ITB2_HUMAN
626-694
69
0
-
-
1.20
ENST00000355153
20
ENSE00001280183
chr21:
46306817-46306651
167
ITB2_HUMAN
694-749
56
0
-
-
1.21c
ENST00000355153
21c
ENSE00001280374
chr21:
46306345-46305868
478
ITB2_HUMAN
750-769
20
1
T:753-763
11
2.1b
ENST00000369850
1b
ENSE00001910769
X:153602994-153602874
121
FLNA_HUMAN
-
0
0
-
-
2.2a
ENST00000369850
2a
ENSE00001451045
X:153599729-153599241
489
FLNA_HUMAN
1-125
125
0
-
-
2.3
ENST00000369850
3
ENSE00001761667
X:153596458-153596210
249
FLNA_HUMAN
125-208
84
0
-
-
2.4
ENST00000369850
4
ENSE00001600780
X:153596106-153596009
98
FLNA_HUMAN
208-240
33
0
-
-
2.5
ENST00000369850
5
ENSE00001593508
X:153595912-153595765
148
FLNA_HUMAN
241-290
50
0
-
-
2.6
ENST00000369850
6
ENSE00001766993
X:153595218-153595100
119
FLNA_HUMAN
290-329
40
0
-
-
2.7
ENST00000369850
7
ENSE00001785883
X:153595007-153594930
78
FLNA_HUMAN
330-355
26
0
-
-
2.8
ENST00000369850
8
ENSE00001609326
X:153594838-153594676
163
FLNA_HUMAN
356-410
55
0
-
-
2.9
ENST00000369850
9
ENSE00001666330
X:153594592-153594392
201
FLNA_HUMAN
410-477
68
0
-
-
2.10
ENST00000369850
10
ENSE00001801647
X:153593854-153593717
138
FLNA_HUMAN
477-523
47
0
-
-
2.11a
ENST00000369850
11a
ENSE00001611867
X:153593627-153593504
124
FLNA_HUMAN
523-564
42
0
-
-
2.12a
ENST00000369850
12a
ENSE00001667367
X:153593325-153593189
137
FLNA_HUMAN
564-610
47
0
-
-
2.12c
ENST00000369850
12c
ENSE00001629480
X:153593087-153592894
194
FLNA_HUMAN
610-674
65
0
-
-
2.13
ENST00000369850
13
ENSE00001779880
X:153592740-153592627
114
FLNA_HUMAN
675-712
38
0
-
-
2.14
ENST00000369850
14
ENSE00001608264
X:153592533-153592390
144
FLNA_HUMAN
713-760
48
0
-
-
2.15
ENST00000369850
15
ENSE00001763171
X:153591152-153591029
124
FLNA_HUMAN
761-802
42
0
-
-
2.16
ENST00000369850
16
ENSE00001721592
X:153590946-153590786
161
FLNA_HUMAN
802-855
54
0
-
-
2.17
ENST00000369850
17
ENSE00001711674
X:153590700-153590610
91
FLNA_HUMAN
856-886
31
0
-
-
2.18
ENST00000369850
18
ENSE00001671781
X:153590516-153590347
170
FLNA_HUMAN
886-942
57
0
-
-
2.19
ENST00000369850
19
ENSE00001747813
X:153590155-153590038
118
FLNA_HUMAN
943-982
40
0
-
-
2.20
ENST00000369850
20
ENSE00001730581
X:153589938-153589676
263
FLNA_HUMAN
982-1069
88
0
-
-
2.21a
ENST00000369850
21a
ENSE00001650468
X:153588955-153588358
598
FLNA_HUMAN
1070-1269
200
0
-
-
2.22
ENST00000369850
22
ENSE00001799214
X:153588273-153588100
174
FLNA_HUMAN
1269-1327
59
0
-
-
2.23a
ENST00000369850
23a
ENSE00001747211
X:153588014-153587852
163
FLNA_HUMAN
1327-1381
55
0
-
-
2.24
ENST00000369850
24
ENSE00001776303
X:153587774-153587614
161
FLNA_HUMAN
1381-1435
55
0
-
-
2.25
ENST00000369850
25
ENSE00001730699
X:153587522-153587352
171
FLNA_HUMAN
1435-1492
58
0
-
-
2.26b
ENST00000369850
26b
ENSE00001594409
X:153586936-153586813
124
FLNA_HUMAN
1492-1533
42
0
-
-
2.27
ENST00000369850
27
ENSE00001770199
X:153586723-153586567
157
FLNA_HUMAN
1533-1585
53
0
-
-
2.28b
ENST00000369850
28b
ENSE00001690672
X:153585991-153585802
190
FLNA_HUMAN
1586-1649
64
0
-
-
2.29
ENST00000369850
29
ENSE00001616004
X:153585642-153585619
24
FLNA_HUMAN
1649-1657
9
0
-
-
2.30a
ENST00000369850
30a
ENSE00001716324
X:153583440-153583193
248
FLNA_HUMAN
1657-1739
83
0
-
-
2.31a
ENST00000369850
31a
ENSE00001764396
X:153583079-153582984
96
FLNA_HUMAN
1740-1771
32
0
-
-
2.32
ENST00000369850
32
ENSE00001736547
X:153582851-153582749
103
FLNA_HUMAN
1772-1806
35
0
-
-
2.33a
ENST00000369850
33a
ENSE00001766949
X:153582659-153582519
141
FLNA_HUMAN
1806-1853
48
0
-
-
2.33c
ENST00000369850
33c
ENSE00001653383
X:153582411-153582283
129
FLNA_HUMAN
1853-1896
44
0
-
-
2.34a
ENST00000369850
34a
ENSE00001618870
X:153582095-153581922
174
FLNA_HUMAN
1896-1954
59
0
-
-
2.35b
ENST00000369850
35b
ENSE00002195079
X:153581825-153581664
162
FLNA_HUMAN
1954-2008
55
0
-
-
2.36b
ENST00000369850
36b
ENSE00001723855
X:153581572-153581369
204
FLNA_HUMAN
2008-2076
69
0
-
-
2.36e
ENST00000369850
36e
ENSE00001619614
X:153581292-153581140
153
FLNA_HUMAN
2076-2127
52
0
-
-
2.36h
ENST00000369850
36h
ENSE00001651775
X:153581043-153580921
123
FLNA_HUMAN
2127-2168
42
0
-
-
2.37
ENST00000369850
37
ENSE00001674826
X:153580815-153580549
267
FLNA_HUMAN
2168-2257
90
1
A:2237-2257
21
2.38a
ENST00000369850
38a
ENSE00001618637
X:153580389-153580252
138
FLNA_HUMAN
2257-2303
47
1
A:2257-2303 (gaps)
47
2.39a
ENST00000369850
39a
ENSE00002154533
X:153580064-153579949
116
FLNA_HUMAN
2303-2341
39
1
A:2303-2328
26
2.39d
ENST00000369850
39d
ENSE00001796872
X:153579409-153579277
133
FLNA_HUMAN
2342-2386
45
0
-
-
2.39f
ENST00000369850
39f
ENSE00001667055
X:153578575-153578399
177
FLNA_HUMAN
2386-2445
60
0
-
-
2.39g
ENST00000369850
39g
ENSE00001781401
X:153578235-153578017
219
FLNA_HUMAN
2445-2518
74
0
-
-
2.40
ENST00000369850
40
ENSE00001665083
X:153577933-153577730
204
FLNA_HUMAN
2518-2586
69
0
-
-
2.41d
ENST00000369850
41d
ENSE00001866943
X:153577404-153577016
389
FLNA_HUMAN
2586-2647
62
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jf1a_ (A:)
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Protein Domains
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(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Filamin repeat (rod domain)
(36)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2jf1a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Filamin_2jf1A01 (A:2237-2322)
2a: PFAM_Integrin_b_cyt_2jf1T01 (T:753-763)
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Clan
:
E-set
(290)
Family
:
Filamin
(9)
Homo sapiens (Human)
(7)
1a
Filamin-2jf1A01
A:2237-2322
Clan
:
no clan defined [family: Integrin_b_cyt]
(11)
Family
:
Integrin_b_cyt
(11)
Homo sapiens (Human)
(11)
2a
Integrin_b_cyt-2jf1T01
T:753-763
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