Chain A from PDB Type:PROTEIN Length:658
aligned with DPOL_BPT7 | P00581 from UniProtKB/Swiss-Prot Length:704
Alignment length:704
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700
DPOL_BPT7 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWAICH 704
SCOP domains d1sl0a1 A:1-210 Exonuclease domain of T7 DNA polymerase d1sl0a2 A:211-704 T7 phage DNA polymerase SCOP domains
CATH domains 1sl0A01 A:1-232 [code=3.30.420.10, no name defined] 1sl0A02 A:233-414 Taq DNA Polymerase; Chain T, domain 4 1sl0A03 A:415-477,A:590-704 1sl0A04 A:478-589 5' to 3' exonuclease, C-terminal subdomain 1sl0A03 A:415-477,A:590-704 [code=3.30.70.370, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .ee.eeee..hhhhh..eeeee.ee....ee......hhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.....hhh.eeehhhhhhhhh..................------.....hhhhhhhhhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........................-..--------------------.......-...eeeeee.....hhhhhhhhhhhh...............hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........eee.........eee.................hhhhhhhhhh.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhh.-------hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...-----------.....eee.....eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_A ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sl0 A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPG------ALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTP-VG--------------------DTREYVA-APYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF-------KIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVE-----------KWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWAICH 704
10 20 30 40 50 60 70 80 90 100 110 | - | 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 | || - - | 320 | | 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 | - | 540 550 560 570 | - |590 600 610 620 630 640 650 660 670 680 690 700
117 124 292 || 316 322 | 528 536 575 587
294| 324
295
Chain B from PDB Type:PROTEIN Length:105
aligned with THIO_ECOLI | P0AA25 from UniProtKB/Swiss-Prot Length:109
Alignment length:105
13 23 33 43 53 63 73 83 93 103
THIO_ECOLI 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108
SCOP domains d1sl0b_ B: Thioredoxin SCOP domains
CATH domains 1sl0B00 B:3-107 Glutaredoxin CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..ee....hhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh.....eeeeee..............ee.eeeeee...eeeeee.....hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------THIOREDOXIN_1 ----------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------- Transcript
1sl0 B 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
12 22 32 42 52 62 72 82 92 102
Chain C from PDB Type:PROTEIN Length:658
aligned with DPOL_BPT7 | P00581 from UniProtKB/Swiss-Prot Length:704
Alignment length:704
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700
DPOL_BPT7 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGKRFGSHALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLYGAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWAICH 704
SCOP domains d1sl0c1 C:1-210 Exonuclease domain of T7 DNA polymerase d1sl0c2 C:211-704 T7 phage DNA polymerase SCOP domains
CATH domains 1sl0C01 C:1-232 [code=3.30.420.10, no name defined] 1sl0C02 C:233-414 Taq DNA Polymerase; Chain T, domain 4 1sl0C03 C:415-477,C:590-704 1sl0C04 C:478-589 5' to 3' exonuclease, C-terminal subdomain 1sl0C03 C:415-477,C:590-704 [code=3.30.70.370, no name defined] CATH domains
Pfam domains (1) -RNase_H_2-1sl0C01 C:2-186 ---------------------------------------------------------------------------------------------------------- -- DNA_pol _A-1sl0C03 C:316-703 - Pfam domains (1)
Pfam domains (2) -RNase_H_2-1sl0C02 C:2-186 ---------------------------------------------------------------------------------------------------------- -- DNA_pol _A-1sl0C04 C:316-703 - Pfam domains (2)
Sec.struct. author .ee.eeee..hhhhh..eeeee.ee....ee......hhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.....hhh.eeehhhhhhhhh..................------.....hhhhhhhhhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........................-..--------------------.......-...eeeeee.....hhhhhhhhhhhh...............hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh........eee.........eee.................hhhhhhhhhh.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhh.-------hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....-----------.....eee.....eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_A ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1sl0 C 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPG------ALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIKTP-VG--------------------DTREYVA-APYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLEGVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGF-------KIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVE-----------KWKRRWIKGLDGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLLDTEGKMGPNWAICH 704
10 20 30 40 50 60 70 80 90 100 110 | - | 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 | || - - | 320 | | 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 | - | 540 550 560 570 | - |590 600 610 620 630 640 650 660 670 680 690 700
117 124 292 || 316 322 | 528 536 575 587
294| 324
295
Chain D from PDB Type:PROTEIN Length:105
aligned with THIO_ECOLI | P0AA25 from UniProtKB/Swiss-Prot Length:109
Alignment length:105
13 23 33 43 53 63 73 83 93 103
THIO_ECOLI 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108
SCOP domains d1sl0d_ D: Thioredoxin SCOP domains
CATH domains 1sl0D00 D:3-107 Glutaredoxin CATH domains
Pfam domains (1) Thioredoxin-1sl0D01 D:3-106 - Pfam domains (1)
Pfam domains (2) Thioredoxin-1sl0D02 D:3-106 - Pfam domains (2)
Sec.struct. author ..ee....hhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh.....eeeeee..............ee.eeeeee...eeeeee.....hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------THIOREDOXIN_1 ----------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------- Transcript
1sl0 D 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 107
12 22 32 42 52 62 72 82 92 102
Chain P from PDB Type:DNA Length:11
1sl0 P 11 GGCCAGTGCCt 21
20|
21-2DT
Chain Q from PDB Type:DNA Length:11
1sl0 Q 11 GGCCAGTGCCt 21
20|
21-2DT
Chain T from PDB Type:DNA Length:10
1sl0 T 6 AGGCACTGGC 15
15
Chain U from PDB Type:DNA Length:10
1sl0 U 6 AGGCACTGGC 15
15
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |