SCOP 2.04 - JenaLib Tree Browser

Fold: DNA/RNA polymerases (850)

Superfamily: DNA/RNA polymerases (850)

Family: DNA polymerase I (233)

Protein domain: automated matches (26)

Escherichia coli K-12 [TaxId: 83333] (1)

3K5O

A:390-783; B:390-783

CRYSTAL STRUCTURE OF E.COLI POL II

Escherichia coli [TaxId: 562] (3)

3K5L	A:390-778	CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY COMPLEX
3K5M	A:390-770	CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2) TERNARY COMPLEX
3K5N	A:390-783; B:390-769	CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX

Geobacillus kaustophilus [TaxId: 1462] (8)

3PV8	A:469-876; D:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDTTP-DA IN CLOSED CONFORMATION
3PX0	A:469-876; D:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION
3PX4	A:469-876; D:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDCTP-DA MISMATCH (WOBBLE) IN AJAR CONFORMATION
3PX6	A:469-876; D:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DNA AND DDCTP-DA MISMATCH (TAUTOMER) IN CLOSED CONFORMATION
4DSE	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT F710Y, DNA DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MG2+
4DSF	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT F710Y, DNA DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MN2+
4EZ6	A:469-876; D:469-876	BACILLUS DNA POLYMERASE I LARGE FRAGMENT COMPLEX 1
4EZ9	A:469-875; D:469-876	BACILLUS DNA POLYMERASE I LARGE FRAGMENT COMPLEX 2

Geobacillus kaustophilus [TaxId: 235909] (6)

4DQP	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT, DNA DUPLEX, AND DDCTP (PAIRED WITH DG OF TEMPLATE)
4DQQ	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT E658A, DNA DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MG2+
4DQR	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT E658A, DNA DUPLEX, AND RCTP (PAIRED WITH DG OF TEMPLATE) IN PRESENCE OF MN2+
4DQS	A:469-876	BINARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT AND DUPLEX DNA WITH RC IN PRIMER TERMINUS PAIRED WITH DG OF TEMPLATE
4DS4	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT, DNA DUPLEX, AND RCTP IN PRESENCE OF MN2+
4DS5	A:469-876; D:469-876	TERNARY COMPLEX OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT, DNA DUPLEX, AND RCTP IN PRESENCE OF MG2+

Geobacillus sp. [TaxId: 129337] (4)

3TAN	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-1) POSITION
3TAP	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-3) POSITION
3TAQ	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-4) POSITION
3TAR	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I LARGE FRAGMENT BOUND TO DUPLEX DNA WITH CYTOSINE-ADENINE MISMATCH AT (N-6) POSITION

Thermococcus gorgonarius [TaxId: 71997] (3)

2VWJ	A:348-757	URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY.
2VWK	A:348-773	URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY. V93Q POLYMERASE VARIANT
2XHB	A:348-757	CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA

Thermococcus kodakarensis [TaxId: 69014] (1)

4K8Z

A:348-756

KOD POLYMERASE IN BINARY COMPLEX WITH DSDNA

Protein domain: DNA polymerase I (Klenow fragment) (82)

Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] (44)

1L3S	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA.
1L3T	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 10 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A SINGLE DTTP RESIDUE
1L3U	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 11 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP AND A DATP RESIDUE.
1L3V	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 15 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF DTTP, DATP, DCTP, AND DGTP RESIDUES.
1L5U	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 12 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP, A DATP, AND A DCTP RESIDUE.
1LV5	A:469-876; B:469-876	CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
1NJW	A:469-876	GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJX	A:469-876	THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJY	A:469-876	THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJZ	A:469-876	CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK0	A:469-876	ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK4	A:469-876	GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK5	A:469-876	ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK6	A:469-876	CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK7	A:469-876	GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK8	A:469-876	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1NK9	A:469-876	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
1NKB	A:469-876	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.
1NKC	A:469-876	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
1NKE	A:469-876	A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1U45	A:469-876	8OXOGUANINE AT THE PRE-INSERTION SITE OF THE POLYMERASE ACTIVE SITE
1U47	A:469-876	CYTOSINE-8-OXOGUANINE BASE PAIR AT THE POLYMERASE ACTIVE SITE
1U48	A:469-876	EXTENSION OF A CYTOSINE-8-OXOGUANINE BASE PAIR
1U49	A:469-876	ADENINE-8OXOGUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1U4B	A:469-876	EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH
1UA0	A:469-876	AMINOFLUORENE DNA ADDUCT AT THE PRE-INSERTION SITE OF A DNA POLYMERASE
1UA1	A:469-876	STRUCTURE OF AMINOFLUORENE ADDUCT PAIRED OPPOSITE CYTOSINE AT THE POLYMERASE ACTIVE SITE.
1XC9	A:469-876	STRUCTURE OF A HIGH-FIDELITY POLYMERASE BOUND TO A BENZO[A]PYRENE ADDUCT THAT BLOCKS REPLICATION
1XWL	A:469-876	BACILLUS STEAROTHERMOPHILUS (NEWLY IDENTIFIED STRAIN AS YET UNNAMED) DNA POLYMERASE FRAGMENT
2BDP	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA
2HHQ	A:469-876	O6-METHYL-GUANINE:T PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHS	A:469-876	O6-METHYL:C PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHT	A:469-876	C:O6-METHYL-GUANINE PAIR IN THE POLYMERASE-2 BASEPAIR POSITION
2HHU	A:469-876	C:O6-METHYL-GUANINE IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
2HHV	A:469-876	T:O6-METHYL-GUANINE IN THE POLYMERASE-2 BASEPAIR POSITION
2HHW	A:469-876; D:469-876	DDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
2HHX	A:469-876	O6-METHYL-GUANINE IN THE POLYMERASE TEMPLATE PREINSERTION SITE
2HVH	A:469-876; D:469-876	DDCTP:O6MEG PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HVI	A:469-876; D:469-876	DDCTP:G PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HW3	A:469-876	T:O6-METHYL-GUANINE PAIR IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
3BDP	A:469-876	DNA POLYMERASE I/DNA COMPLEX
3EYZ	A:469-876	COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA (OPEN FORM)
3EZ5	A:469-876; D:469-876	COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA , DCTP, AND ZINC (CLOSED FORM).
4BDP	A:469-876	CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES

Escherichia coli [TaxId: 562] (14)

1D8Y	A:519-928	CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
1D9D	A:519-928	CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'
1D9F	A:519-928	CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'
1DPI	A:519-928	STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
1KFD	A:519-928	CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE
1KFS	A:519-928	DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KLN	A:519-928	DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KRP	A:519-928	DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KSP	A:519-928	DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1QSL	A:519-928	KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
2KFN	A:519-928	KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE
2KFZ	A:519-928	KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY
2KZM	A:519-928	KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
2KZZ	A:519-928	KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY

Thermus aquaticus [TaxId: 271] (24)

1BGX	T:423-832	TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
1JXE	A:423-832	STOFFEL FRAGMENT OF TAQ DNA POLYMERASE I
1KTQ	A:423-832	DNA POLYMERASE
1QSS	A:423-831	DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QSY	A:423-831	DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QTM	A:423-831	DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1TAQ	A:423-832	STRUCTURE OF TAQ DNA POLYMERASE
1TAU	A:423-832	TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX
2KTQ	A:423-832	OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3KTQ	A:423-831	CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3M8R	A:423-832	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-ETHYLATED DTTP
3M8S	A:423-832	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-METHYLATED DTTP
3OJU	A:423-832	SNAPSHOT OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS PROCESSING C5 MODIFIED THYMIDIES
3RR7	A:423-832	BINARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE
3RR8	A:423-832	TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRG	A:423-832	TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRH	A:423-832	TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDTTP
3RTV	A:423-832	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL PRIMER/TEMPLATE DNA
3T3F	A:423-832	TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND DNITP
4DF4	A:423-832	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH 7-(N-(10-HYDROXYDECANOYL)-AMINOPENTINYL)-7-DEAZA-2 -DATP
4DFP	A:423-832	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQAUTICUS IN A TERNARY COMPLEX WITH 7-(AMINOPENTINYL)-7-DEAZA-DGTP
4DLG	A:423-832	TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE
4KTQ	A:423-832	BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
5KTQ	A:423-832	LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP

Protein domain: Family B DNA polymerase (100)

Bacteriophage RB69 [TaxId: 12353] (92)

1CLQ	A:376-903	CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
1IG9	A:376-901	STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE
1IH7	A:376-903	HIGH-RESOLUTION STRUCTURE OF APO RB69 DNA POLYMERASE
1Q9X	A:376-903; B:376-903; C:376-903; D:376-903	CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH TETRAHYDROFURAN CONTAINING DNA
1Q9Y	A:376-902	CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA
1WAF	A:376-903; B:376-903	DNA POLYMERASE FROM BACTERIOPHAGE RB69
1WAJ	A:376-903	DNA POLYMERASE FROM BACTERIOPHAGE RB69
2ATQ	A:376-903	RB69 SINGLE-STRANDED DNA BINDING PROTEIN-DNA POLYMERASE FUSION
2DTU	A:376-903; B:376-903; C:376-899; D:376-898	CRYSTAL STRUCTURE OF THE BETA HAIRPIN LOOP DELETION VARIANT OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE ANALOG
2DY4	A:376-902; B:376-902; C:376-900; D:376-897	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING THYMINE GLYCOL
2OYQ	A:376-903; B:376-899; C:376-900; D:376-898	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH 5-NIMP OPPOSITE AN ABASIC SITE ANALOG
2OZM	A:376-903	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH 5-NITP OPPOSITE AN ABASIC SITE ANALOG
2OZS	A:376-903	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH DATP OPPOSITE DTMP
2P5G	A:376-903; B:376-899; C:376-898; D:376-899	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH DAMP OPPOSITE AN ABASIC SITE ANALOG IN A 21MER TEMPLATE
2P5O	A:376-902; B:376-901; C:376-898; D:376-896	CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE ANALOG
3CFO	A:376-906	TRIPLE MUTANT APO STRUCTURE
3CQ8	A:376-902	TERNARY COMPLEX OF THE L415F MUTANT RB69 EXO(-)POLYMERASE
3L8B	A:376-903; B:376-903	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO THE OXIDIZED GUANINE LESION GUANIDINOHYDANTOIN
3LDS	A:376-903	CRYSTAL STRUCTURE OF RB69 GP43 WITH DNA AND DATP OPPOSITE 8-OXOG
3LZI	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
3LZJ	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
3NAE	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE GUANIDINOHYDANTOIN
3NCI	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE DG AT 1.8 ANGSTROM RESOLUTION
3NDK	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
3NE6	A:376-903	RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
3NGI	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
3NHG	A:376-903	RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
3QES	A:376-902	RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DGTP OPPOSITE DIFLUOROTOLUENE NUCLEOSIDE
3QET	A:376-903	RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DT
3RMA	A:376-903; B:376-903; C:376-899; D:376-898	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMB	A:376-903; B:376-903; C:376-900; D:376-897	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMC	A:376-902; B:376-902; C:376-901; D:376-897	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMD	A:376-902; B:376-902; C:376-901; D:376-897	CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3S9H	A:376-903	RB69 DNA POLYMERASE TRIPLE MUTANT(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DIDEOXY-TERMINATED PRIMER IN THE PRESENCE OF CA2+
3SCX	A:376-903	RB69 DNA POLYMERASE TRIPLE MUTANT(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF CA2+
3SI6	A:376-903	RB69 DNA POLYMERASE TRIPLE MUTANT (L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF MG2+
3SJJ	A:376-901	RB69 DNA POLYMERASE TRIPLE MUTANT (L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF MN2+
3SNN	A:376-903	RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG IN THE PRESENCE OF MG2+
3SPY	A:376-901	RB69 DNA POLYMERASE(L415A/L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPCPP OPPOSITE DA
3SPZ	A:376-903	DNA POLYMERASE(L415A/L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPCPP OPPOSITE DA (CA2+)
3SQ0	A:376-903	DNA POLYMERASE(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP OPPOSITE DA (MN2+)
3SQ1	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DUPCPP OPPOSITE DA
3SQ2	A:376-902	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (AT RICH SEQUENCE)
3SQ4	A:376-902	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUN	A:376-895	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (AT RICH SEQUENCE)
3SUO	A:376-900	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUP	A:376-903	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUQ	A:376-897	RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 2AP (AT RICH SEQUENCE)
3TAE	A:376-903; B:376-901; C:376-903; D:376-898	5-HYDROXYCYTOSINE PAIRED WITH DAMP IN RB69 GP43
3TAG	A:376-906; B:376-901; C:376-903; D:376-898	5-FLUOROCYTOSINE PAIRED WITH DAMP IN RB69 GP43
3UIQ	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX CONTAINING DUPNPP
4DTJ	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE AN ABASIC SITE AND DDT/DA AS THE PENULTIMATE BASE-PAIR
4DTM	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDG/DC AS THE PENULTIMATE BASE-PAIR
4DTN	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTO	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTP	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTR	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTS	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTU	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTX	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DU1	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE DT
4DU3	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DDTP OPPOSITE DT WITH 3-DEAZA-ADENINE AT THE N-1 POSITION OF TEMPLATE STRAND
4DU4	A:376-902	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE DT WITH 3-DEAZA-ADENINE AT THE N-3 POSITION OF PRIMER STRAND
4E3S	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DQTP OPPOSITE DT
4FJ5	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DT
4FJ7	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DT
4FJ8	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DT
4FJ9	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DT
4FJG	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DC
4FJH	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DC
4FJI	A:376-903	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DC
4FJJ	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DC
4FJK	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DA
4FJL	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DA
4FJM	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DA
4FJN	A:376-900	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DA
4FJX	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DG
4FK0	A:376-900	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DG
4FK2	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DG
4FK4	A:376-901	RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DG
4I9L	A:376-903	CRYSTAL STRUCTURE OF THE D714A MUTANT OF RB69 DNA POLYMERASE
4J2A	A:376-901	RB69 DNA POLYMERASE L415A TERNARY COMPLEX
4J2B	A:376-901	RB69 DNA POLYMERASE L415G TERNARY COMPLEX
4J2E	A:376-901	RB69 DNA POLYMERASE L415M TERNARY COMPLEX
4KHN	A:376-901; B:376-901	CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF THE D714A MUTANT OF RB69 DNA POLYMERASE
4KHQ	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WIT DUMPNPP
4KHS	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WITH A RIBONUCLEOTIDE AT 0 POSITION
4KHU	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WITH A RIBONUCLEOTIDE AT -1 POSITION
4KHW	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -2 POSITION
4KHY	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -3 POSITION
4KI4	A:376-901	TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDES AT 0 AND -1 POSITION
4KI6	A:376-902	TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDES AT -1 AND -2 POSITION

Desulfurococcus tok [TaxId: 108142] (2)

1D5A	A:348-756	CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM
1QQC	A:348-756	CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK

Escherichia coli [TaxId: 562] (1)

1Q8I

A:390-783

CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNA POLYMERASE II

Pyrococcus kodakaraensis [TaxId: 311400] (2)

1WN7	A:348-756	CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT
1WNS	A:348-758	CRYSTAL STRUCTURE OF FAMILY B DNA POLYMERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS KOD1

Sulfolobus solfataricus [TaxId: 2287] (1)

1S5J

A:450-864

INSIGHT IN DNA REPLICATION: THE CRYSTAL STRUCTURE OF DNA POLYMERASE B1 FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS

Thermococcus gorgonarius [TaxId: 71997] (1)

1TGO

A:348-773

THERMOSTABLE B TYPE DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS

Thermococcus sp., 9on-7 [TaxId: 35749] (1)

1QHT

A:348-750

DNA POLYMERASE FROM THERMOCOCCUS SP. 9ON-7 ARCHAEON

Protein domain: phi29 DNA polymerase (8)

Bacteriophage phi-29 [TaxId: 10756] (8)

1XHX	A:188-575; B:188-575; C:188-575; D:188-575	PHI29 DNA POLYMERASE, ORTHORHOMBIC CRYSTAL FORM
1XHZ	A:188-575; B:188-575; C:188-575; D:188-575	PHI29 DNA POLYMERASE, ORTHORHOMBIC CRYSTAL FORM, SSDNA COMPLEX
1XI1	A:188-575; B:188-575	PHI29 DNA POLYMERASE SSDNA COMPLEX, MONOCLINIC CRYSTAL FORM
2EX3	A:188-575; C:188-575; E:188-575; G:188-575; I:188-575; K:188-575	BACTERIOPHAGE PHI29 DNA POLYMERASE BOUND TO TERMINAL PROTEIN
2PY5	A:188-575; B:188-575	PHI29 DNA POLYMERASE COMPLEXED WITH SINGLE-STRANDED DNA
2PYJ	A:188-575; B:188-575	PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX)
2PYL	A:188-575	PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX)
2PZS	A:188-575; B:188-575; C:188-575; D:188-574	PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA (POST-TRANSLOCATION BINARY COMPLEX)

Protein domain: T7 phage DNA polymerase (17)

Bacteriophage T7 [TaxId: 10760] (17)

1SKR	A:211-704	T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE AND DDATP
1SKS	A:211-704	BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SKW	A:211-704	BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL0	A:211-704; C:211-704	TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1SL1	A:211-704	BINARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL2	A:211-704	TERNARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1T7P	A:211-704	T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN
1T8E	A:211-704	T7 DNA POLYMERASE TERNARY COMPLEX WITH DCTP AT THE INSERTION SITE.
1TK0	A:211-704	T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DDCTP AT THE INSERTION SITE
1TK5	A:211-704	T7 DNA POLYMERASE BINARY COMPLEX WITH 8 OXO GUANOSINE IN THE TEMPLATING STRAND
1TK8	A:211-704	T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DAMP AT THE ELONGATION SITE
1TKD	A:211-704	T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DCMP AT THE ELONGATION SITE
1X9M	A:211-704	T7 DNA POLYMERASE IN COMPLEX WITH AN N-2-ACETYLAMINOFLUORENE-ADDUCTED DNA
1X9S	A:211-704	T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-CTP AS THE INCOMING NUCLEOTIDE.
1X9W	A:211-704	T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-ATP AS THE INCOMING NUCLEOTIDE.
1ZYQ	A:211-704	T7 DNA POLYMERASE IN COMPLEX WITH 8OG AND INCOMING DDATP
2AJQ	A:211-704; F:211-704	STRUCTURE OF REPLICATIVE DNA POLYMERASE PROVIDES INSIGTS INTO THE MECHANISMS FOR PROCESSIVITY, FRAMESHIFTING AND EDITING