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Class: Alpha Beta (26913)
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Architecture: 2-Layer Sandwich (8480)
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Topology: Alpha-Beta Plaits (1688)
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Homologous Superfamily: [code=3.30.70.370, no name defined] (99)
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[unclassified] (84)
1CEZA:421-449,A:528-553,A:785-872CRYSTAL STRUCTURE OF A T7 RNA POLYMERASE-T7 PROMOTER COMPLEX
1D8YA:659-708,A:853-927CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
1D9DA:659-708,A:853-927CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'
1D9FA:659-708,A:853-927CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'
1KFSA:659-708,A:853-927DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KLNA:659-708,A:853-927DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KRPA:659-708,A:853-927DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KSPA:659-708,A:853-927DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1L3SA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA.
1L3TA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 10 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A SINGLE DTTP RESIDUE
1L3UA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 11 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP AND A DATP RESIDUE.
1L3VA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 15 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF DTTP, DATP, DCTP, AND DGTP RESIDUES.
1L5UA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 12 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP, A DATP, AND A DCTP RESIDUE.
1LV5A:606-656,A:801-875; B:606-656,B:801-875CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
1MSWD:421-449,D:528-553,D:785-872STRUCTURAL BASIS FOR THE TRANSITION FROM INITIATION TO ELONGATION TRANSCRIPTION IN T7 RNA POLYMERASE
1NJWA:606-656,A:801-875GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJXA:606-656,A:801-875THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJYA:606-656,A:801-875THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJZA:606-656,A:801-875CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK0A:606-656,A:801-875ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK4A:606-656,A:801-875GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK5A:606-656,A:801-875ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK6A:606-656,A:801-875CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK7A:606-656,A:801-875GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK8A:606-656,A:801-875A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1NK9A:606-656,A:801-875A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
1NKBA:606-656,A:801-875A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.
1NKCA:606-656,A:801-875A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
1NKEA:606-656,A:801-875A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1QSLA:659-708,A:853-927KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
1QSSA:564-613,A:758-831DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QSYA:564-613,A:758-831DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QTMA:564-613,A:758-831DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1S0VA:421-449,A:528-553,A:785-872; B:421-449,B:528-553,B:785-872; C:421-449,C:528-553,C:785-872; D:421-449,D:528-553,D:785-872STRUCTURAL BASIS FOR SUBSTRATE SELECTION BY T7 RNA POLYMERASE
1S76D:421-449,D:528-553,D:785-872T7 RNA POLYMERASE ALPHA BETA METHYLENE ATP ELONGATION COMPLEX
1S77D:421-449,D:528-553,D:785-872T7 RNAP PRODUCT PYROPHOSPHATE ELONGATION COMPLEX
1SKRA:415-477,A:590-704T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE AND DDATP
1SKSA:415-477,A:590-704BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SKWA:415-477,A:590-704BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL0A:415-477,A:590-704; C:415-477,C:590-704TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1SL1A:415-477,A:590-704BINARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL2A:415-477,A:590-704TERNARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1T7PA:415-477,A:590-704T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN
1T8EA:415-477,A:590-704T7 DNA POLYMERASE TERNARY COMPLEX WITH DCTP AT THE INSERTION SITE.
1TAUA:562-613,A:758-829TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX
1TK0A:415-477,A:590-704T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DDCTP AT THE INSERTION SITE
1TK5A:415-477,A:590-704T7 DNA POLYMERASE BINARY COMPLEX WITH 8 OXO GUANOSINE IN THE TEMPLATING STRAND
1TK8A:415-477,A:590-704T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DAMP AT THE ELONGATION SITE
1TKDA:415-477,A:590-704T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DCMP AT THE ELONGATION SITE
1U45A:606-656,A:801-8758OXOGUANINE AT THE PRE-INSERTION SITE OF THE POLYMERASE ACTIVE SITE
1U47A:606-656,A:801-875CYTOSINE-8-OXOGUANINE BASE PAIR AT THE POLYMERASE ACTIVE SITE
1U48A:606-656,A:801-875EXTENSION OF A CYTOSINE-8-OXOGUANINE BASE PAIR
1U49A:606-656,A:801-875ADENINE-8OXOGUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1U4BA:606-656,A:801-875EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH
1UA0A:606-656,A:801-875AMINOFLUORENE DNA ADDUCT AT THE PRE-INSERTION SITE OF A DNA POLYMERASE
1UA1A:606-656,A:801-875STRUCTURE OF AMINOFLUORENE ADDUCT PAIRED OPPOSITE CYTOSINE AT THE POLYMERASE ACTIVE SITE.
1X9MA:415-477,A:590-704T7 DNA POLYMERASE IN COMPLEX WITH AN N-2-ACETYLAMINOFLUORENE-ADDUCTED DNA
1X9SA:415-477,A:590-704T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-CTP AS THE INCOMING NUCLEOTIDE.
1X9WA:415-477,A:590-704T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-ATP AS THE INCOMING NUCLEOTIDE.
1XC9A:606-656,A:801-875STRUCTURE OF A HIGH-FIDELITY POLYMERASE BOUND TO A BENZO[A]PYRENE ADDUCT THAT BLOCKS REPLICATION
1ZYQA:415-477,A:590-704T7 DNA POLYMERASE IN COMPLEX WITH 8OG AND INCOMING DDATP
2AJQA:415-477,A:590-704; F:415-477,F:590-704STRUCTURE OF REPLICATIVE DNA POLYMERASE PROVIDES INSIGTS INTO THE MECHANISMS FOR PROCESSIVITY, FRAMESHIFTING AND EDITING
2BDPA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA
2HHQA:606-656,A:801-875O6-METHYL-GUANINE:T PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHSA:606-656,A:801-875O6-METHYL:C PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHTA:606-656,A:801-875C:O6-METHYL-GUANINE PAIR IN THE POLYMERASE-2 BASEPAIR POSITION
2HHUA:606-656,A:801-875C:O6-METHYL-GUANINE IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
2HHVA:606-656,A:801-875T:O6-METHYL-GUANINE IN THE POLYMERASE-2 BASEPAIR POSITION
2HHWA:606-656,A:801-875; D:606-656,D:801-875DDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
2HHXA:606-656,A:801-875O6-METHYL-GUANINE IN THE POLYMERASE TEMPLATE PREINSERTION SITE
2HVHA:606-656,A:801-875; D:606-656,D:801-875DDCTP:O6MEG PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HVIA:606-656,A:801-875; D:606-656,D:801-875DDCTP:G PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HW3A:606-656,A:801-875T:O6-METHYL-GUANINE PAIR IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
2KFNA:659-708,A:853-927KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE
2KFZA:659-708,A:853-927KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY
2KTQA:564-613,A:758-831OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
2KZMA:659-708,A:853-927KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
2KZZA:659-708,A:853-927KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY
2PI4A:421-449,A:528-553,A:785-872T7RNAP COMPLEXED WITH A PHI10 PROTEIN AND INITIATING GTPS.
2PI5A:421-449,A:528-553,A:785-872T7 RNA POLYMERASE COMPLEXED WITH A PHI10 PROMOTER
3BDPA:606-656,A:801-875DNA POLYMERASE I/DNA COMPLEX
3KTQA:564-613,A:758-831CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
4BDPA:606-656,A:801-875CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES
4KTQA:564-613,A:758-831BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
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Bacillus stearothermophilus. (2)
3EYZA:606-656,A:801-875COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA (OPEN FORM)
3EZ5A:606-656,A:801-875; D:606-656,D:801-875COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA , DCTP, AND ZINC (CLOSED FORM).
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Bacteriophage t7. (1)
3E2EA:421-449,A:528-553,A:785-872CRYSTAL STRUCTURE OF AN INTERMEDIATE COMPLEX OF T7 RNAP AND 7NT OF RNA
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Bacteriophage t7. Organism_taxid: 10760. (2)
1H38A:421-449,A:528-553,A:785-872; B:421-449,B:528-553,B:785-872; C:421-449,C:528-553,C:785-872; D:421-449,D:528-553,D:785-872STRUCTURE OF A T7 RNA POLYMERASE ELONGATION COMPLEX AT 2.9A RESOLUTION
1QLNA:421-449,A:528-553,A:785-872STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX
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Enterobacteria phage t7. Organism_taxid: 10760. (1)
1AROP:421-449,P:528-553,P:785-879T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME
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Escherichia coli. Organism_taxid: 562 (1)
1KFDA:659-708,A:853-927CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE
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Geobacillus stearothermophilus. Organism_taxid: 1422. (1)
1XWLA:606-656,A:801-875BACILLUS STEAROTHERMOPHILUS (NEWLY IDENTIFIED STRAIN AS YET UNNAMED) DNA POLYMERASE FRAGMENT
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Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: dsm 22. (1)
2XO7A:606-656,A:801-875CRYSTAL STRUCTURE OF A DA:O-ALLYLHYDROXYLAMINE-DC BASEPAIR IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS
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Thermus aquaticus. Organism_taxid: 271. (2)
1BGXT:562-613,T:758-831TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
1TAQA:562-613,A:758-832STRUCTURE OF TAQ DNA POLYMERASE
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Thermus aquaticus. Organism_taxid: 271. (2)
1KTQA:564-613,A:758-832DNA POLYMERASE
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Thermus aquaticus. Organism_taxid: 271. Cell_line: 293. (1)
1JXEA:564-613,A:758-830STOFFEL FRAGMENT OF TAQ DNA POLYMERASE I
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Thermus aquaticus. Organism_taxid: 271. Strain: x7029. (1)
5KTQA:564-613,A:758-831LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP