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Class: Alpha and beta proteins (a/b) (23833)
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Fold: Ribonuclease H-like motif (1424)
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Superfamily: Ribonuclease H-like (775)
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Family: DnaQ-like 3'-5' exonuclease (253)
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Protein domain: automated matches (19)
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Coxiella burnetii [TaxId: 777] (1)
3TR8A:; B:STRUCTURE OF AN OLIGORIBONUCLEASE (ORN) FROM COXIELLA BURNETII
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Escherichia coli K-12 [TaxId: 83333] (2)
2IS3A:; B:; C:; D:CRYSTAL STRUCTURE OF ESCHERICHIA COLI RNASE T
3K5OA:2-389; B:2-389CRYSTAL STRUCTURE OF E.COLI POL II
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Escherichia coli [TaxId: 562] (13)
2GUIA:STRUCTURE AND FUNCTION OF CYCLIZED VERSIONS OF THE PROOFREADING EXONUCLEASE SUBUNIT OF E. COLI DNA POLYMERASE III
2IDOA:; C:STRUCTURE OF THE E. COLI POL III EPSILON-HOT PROOFREADING COMPLEX
2XY8A:PARAMAGNETIC-BASED NMR STRUCTURE OF THE COMPLEX BETWEEN THE N-TERMINAL EPSILON DOMAIN AND THE THETA DOMAIN OF THE DNA POLYMERASE III
3C94A:EXOI/SSB-CT COMPLEX
3C95A:EXONUCLEASE I (APO)
3K5LA:-2-389CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DATP LT(0, 3) TERNARY COMPLEX
3K5MA:-1-389CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA-DDGTP LT(-2, 2) TERNARY COMPLEX
3K5NA:1-389; B:0-389CRYSTAL STRUCTURE OF E.COLI POL II-ABASIC DNA BINARY COMPLEX
3NGYA:; B:; C:; D:CRYSTAL STRUCTURE OF RNASE T (E92G MUTANT)
3NGZA:; B:CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED SSDNA (GC) WITH ONE MG IN THE ACTIVE SITE
3NH0A:; B:CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A NON-PREFERRED SSDNA (AAC)
3NH1A:; B:; C:; D:CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A PREFERRED SSDNA (TAGG) WITH TWO MG IN THE ACTIVE SITE
3NH2A:; B:; E:; F:CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A STEM DNA WITH A 3' OVERHANG
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Thermococcus gorgonarius [TaxId: 71997] (3)
2VWJA:1-347URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY.
2VWKA:1-347URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY. V93Q POLYMERASE VARIANT
2XHBA:1-347CRYSTAL STRUCTURE OF DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS IN COMPLEX WITH HYPOXANTHINE-CONTAINING DNA
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Protein domain: Exonuclease domain of family B DNA polymerases (102)
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Bacteriophage RB69 [TaxId: 12353] (92)
1CLQA:1-375CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
1IG9A:1-375STRUCTURE OF THE REPLICATING COMPLEX OF A POL ALPHA FAMILY DNA POLYMERASE
1IH7A:1-375HIGH-RESOLUTION STRUCTURE OF APO RB69 DNA POLYMERASE
1Q9XA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH TETRAHYDROFURAN CONTAINING DNA
1Q9YA:1-375CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNA
1WAFA:1-375; B:1-375DNA POLYMERASE FROM BACTERIOPHAGE RB69
1WAJA:1-375DNA POLYMERASE FROM BACTERIOPHAGE RB69
2ATQA:1-375RB69 SINGLE-STRANDED DNA BINDING PROTEIN-DNA POLYMERASE FUSION
2DTUA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF THE BETA HAIRPIN LOOP DELETION VARIANT OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE ANALOG
2DY4A:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING THYMINE GLYCOL
2OYQA:1-375; B:1-375; C:1-375; D:2-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH 5-NIMP OPPOSITE AN ABASIC SITE ANALOG
2OZMA:1-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH 5-NITP OPPOSITE AN ABASIC SITE ANALOG
2OZSA:1-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH DATP OPPOSITE DTMP
2P5GA:1-375; B:1-375; C:1-375; D:2-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA WITH DAMP OPPOSITE AN ABASIC SITE ANALOG IN A 21MER TEMPLATE
2P5OA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF RB69 GP43 IN COMPLEX WITH DNA CONTAINING AN ABASIC SITE ANALOG
3CFOA:1-375TRIPLE MUTANT APO STRUCTURE
3CQ8A:1-375TERNARY COMPLEX OF THE L415F MUTANT RB69 EXO(-)POLYMERASE
3L8BA:1-375; B:1-375CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO THE OXIDIZED GUANINE LESION GUANIDINOHYDANTOIN
3LDSA:1-375CRYSTAL STRUCTURE OF RB69 GP43 WITH DNA AND DATP OPPOSITE 8-OXOG
3LZIA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
3LZJA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 7,8-DIHYDRO-8-OXOGUANINE
3NAEA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DATP OPPOSITE GUANIDINOHYDANTOIN
3NCIA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE DG AT 1.8 ANGSTROM RESOLUTION
3NDKA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
3NE6A:1-375RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG
3NGIA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
3NHGA:1-375RB69 DNA POLYMERASE (S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DG
3QESA:1-375RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DGTP OPPOSITE DIFLUOROTOLUENE NUCLEOSIDE
3QETA:1-375RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE DT
3RMAA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMBA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMCA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3RMDA:1-375; B:1-375; C:1-375; D:1-375CRYSTAL STRUCTURE OF A REPLICATIVE DNA POLYMERASE BOUND TO DNA CONTAINING THYMINE GLYCOL
3S9HA:1-375RB69 DNA POLYMERASE TRIPLE MUTANT(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DIDEOXY-TERMINATED PRIMER IN THE PRESENCE OF CA2+
3SCXA:1-375RB69 DNA POLYMERASE TRIPLE MUTANT(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF CA2+
3SI6A:1-375RB69 DNA POLYMERASE TRIPLE MUTANT (L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF MG2+
3SJJA:1-375RB69 DNA POLYMERASE TRIPLE MUTANT (L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP AND A DEOXY-TERMINATED PRIMER IN THE PRESENCE OF MN2+
3SNNA:1-375RB69 DNA POLYMERASE (L561A/S565G/Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE DG IN THE PRESENCE OF MG2+
3SPYA:1-375RB69 DNA POLYMERASE(L415A/L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPCPP OPPOSITE DA
3SPZA:1-375DNA POLYMERASE(L415A/L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPCPP OPPOSITE DA (CA2+)
3SQ0A:1-375DNA POLYMERASE(L561A/S565G/Y567A) TERNARY COMPLEX WITH DUPNPP OPPOSITE DA (MN2+)
3SQ1A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DUPCPP OPPOSITE DA
3SQ2A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (AT RICH SEQUENCE)
3SQ4A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUNA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (AT RICH SEQUENCE)
3SUOA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DTTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUPA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 2AP (GC RICH SEQUENCE)
3SUQA:1-375RB69 DNA POLYMERASE (Y567A) TERNARY COMPLEX WITH DCTP OPPOSITE 2AP (AT RICH SEQUENCE)
3TAEA:1-375; B:1-375; C:1-375; D:1-3755-HYDROXYCYTOSINE PAIRED WITH DAMP IN RB69 GP43
3TAGA:1-375; B:1-375; C:1-375; D:1-3755-FLUOROCYTOSINE PAIRED WITH DAMP IN RB69 GP43
3UIQA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX CONTAINING DUPNPP
4DTJA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE AN ABASIC SITE AND DDT/DA AS THE PENULTIMATE BASE-PAIR
4DTMA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDG/DC AS THE PENULTIMATE BASE-PAIR
4DTNA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTOA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTPA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP OPPOSITE AN ABASIC SITE AND DDA/DT AS THE PENULTIMATE BASE-PAIR
4DTRA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTSA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTUA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DTXA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP OPPOSITE AN ABASIC SITE AND DDC/DG AS THE PENULTIMATE BASE-PAIR
4DU1A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE DT
4DU3A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DDTP OPPOSITE DT WITH 3-DEAZA-ADENINE AT THE N-1 POSITION OF TEMPLATE STRAND
4DU4A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP OPPOSITE DT WITH 3-DEAZA-ADENINE AT THE N-3 POSITION OF PRIMER STRAND
4E3SA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DQTP OPPOSITE DT
4FJ5A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DT
4FJ7A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DT
4FJ8A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DT
4FJ9A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DT
4FJGA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DC
4FJHA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DC
4FJIA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DC
4FJJA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DC
4FJKA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DA
4FJLA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DA
4FJMA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DA
4FJNA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DA
4FJXA:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DATP/DG
4FK0A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DCTP/DG
4FK2A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DTTP/DG
4FK4A:1-375RB69 DNA POLYMERASE TERNARY COMPLEX WITH DGTP/DG
4I9LA:1-375CRYSTAL STRUCTURE OF THE D714A MUTANT OF RB69 DNA POLYMERASE
4J2AA:1-375RB69 DNA POLYMERASE L415A TERNARY COMPLEX
4J2BA:1-375RB69 DNA POLYMERASE L415G TERNARY COMPLEX
4J2EA:1-375RB69 DNA POLYMERASE L415M TERNARY COMPLEX
4KHNA:1-375; B:1-375CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF THE D714A MUTANT OF RB69 DNA POLYMERASE
4KHQA:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WIT DUMPNPP
4KHSA:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH A RIBONUCLEOTIDE AT 0 POSITION
4KHUA:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH A RIBONUCLEOTIDE AT -1 POSITION
4KHWA:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -2 POSITION
4KHYA:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDE AT -3 POSITION
4KI4A:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDES AT 0 AND -1 POSITION
4KI6A:1-375TERNARY COMPLEX OF RB69 MUTANT L415F WITH RIBONUCLEOTIDES AT -1 AND -2 POSITION
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Bacteriophage T4 [TaxId: 10665] (2)
1NOYA:; B:DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX
1NOZA:; B:T4 DNA POLYMERASE FRAGMENT (RESIDUES 1-388) AT 110K
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Desulfurococcus tok [TaxId: 108142] (2)
1D5AA:1-347CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM
1QQCA:1-347CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK
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Escherichia coli [TaxId: 562] (1)
1Q8IA:2-389CRYSTAL STRUCTURE OF ESCHERICHIA COLI DNA POLYMERASE II
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Pyrococcus kodakaraensis [TaxId: 311400] (2)
1WN7A:1-347CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT
1WNSA:1-347CRYSTAL STRUCTURE OF FAMILY B DNA POLYMERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS KOD1
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Sulfolobus solfataricus [TaxId: 2287] (1)
1S5JA:40-449INSIGHT IN DNA REPLICATION: THE CRYSTAL STRUCTURE OF DNA POLYMERASE B1 FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS
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Thermococcus gorgonarius [TaxId: 71997] (1)
1TGOA:1-347THERMOSTABLE B TYPE DNA POLYMERASE FROM THERMOCOCCUS GORGONARIUS
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Thermococcus sp., 9on-7 [TaxId: 35749] (1)
1QHTA:1-347DNA POLYMERASE FROM THERMOCOCCUS SP. 9ON-7 ARCHAEON
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Protein domain: Exonuclease domain of phi29 DNA polymerase (8)
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Bacteriophage phi-29 [TaxId: 10756] (8)
1XHXA:5-187; B:5-187; C:5-187; D:5-187PHI29 DNA POLYMERASE, ORTHORHOMBIC CRYSTAL FORM
1XHZA:5-187; B:5-187; C:5-187; D:5-187PHI29 DNA POLYMERASE, ORTHORHOMBIC CRYSTAL FORM, SSDNA COMPLEX
1XI1A:5-187; B:5-187PHI29 DNA POLYMERASE SSDNA COMPLEX, MONOCLINIC CRYSTAL FORM
2EX3A:6-187; C:6-187; E:6-187; G:6-187; I:6-187; K:6-187BACTERIOPHAGE PHI29 DNA POLYMERASE BOUND TO TERMINAL PROTEIN
2PY5A:5-187; B:5-187PHI29 DNA POLYMERASE COMPLEXED WITH SINGLE-STRANDED DNA
2PYJA:5-187; B:3-187PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX)
2PYLA:5-187PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX)
2PZSA:5-187; B:5-187; C:5-187; D:5-187PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA (POST-TRANSLOCATION BINARY COMPLEX)
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Protein domain: Exonuclease domain of prokaryotic DNA polymerase (81)
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Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] (43)
1L3SA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA.
1L3TA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 10 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A SINGLE DTTP RESIDUE
1L3UA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 11 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP AND A DATP RESIDUE.
1L3VA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 15 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF DTTP, DATP, DCTP, AND DGTP RESIDUES.
1L5UA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 12 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP, A DATP, AND A DCTP RESIDUE.
1LV5A:297-468; B:297-468CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
1NJWA:297-468GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJXA:297-468THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJYA:297-468THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJZA:297-468CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK0A:297-468ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK4A:297-468GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK5A:297-468ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK6A:297-468CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK7A:297-468GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK8A:297-468A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1NK9A:297-468A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
1NKBA:297-468A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.
1NKCA:297-468A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
1NKEA:297-468A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1U45A:299-4688OXOGUANINE AT THE PRE-INSERTION SITE OF THE POLYMERASE ACTIVE SITE
1U47A:299-468CYTOSINE-8-OXOGUANINE BASE PAIR AT THE POLYMERASE ACTIVE SITE
1U48A:299-468EXTENSION OF A CYTOSINE-8-OXOGUANINE BASE PAIR
1U49A:299-468ADENINE-8OXOGUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1U4BA:299-468EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH
1UA0A:297-468AMINOFLUORENE DNA ADDUCT AT THE PRE-INSERTION SITE OF A DNA POLYMERASE
1UA1A:297-468STRUCTURE OF AMINOFLUORENE ADDUCT PAIRED OPPOSITE CYTOSINE AT THE POLYMERASE ACTIVE SITE.
1XC9A:297-468STRUCTURE OF A HIGH-FIDELITY POLYMERASE BOUND TO A BENZO[A]PYRENE ADDUCT THAT BLOCKS REPLICATION
1XWLA:297-468BACILLUS STEAROTHERMOPHILUS (NEWLY IDENTIFIED STRAIN AS YET UNNAMED) DNA POLYMERASE FRAGMENT
2BDPA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA
2HHQA:298-468O6-METHYL-GUANINE:T PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHSA:298-468O6-METHYL:C PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHTA:298-468C:O6-METHYL-GUANINE PAIR IN THE POLYMERASE-2 BASEPAIR POSITION
2HHUA:298-468C:O6-METHYL-GUANINE IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
2HHVA:298-468T:O6-METHYL-GUANINE IN THE POLYMERASE-2 BASEPAIR POSITION
2HHWA:297-468; D:297-468DDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
2HHXA:298-468O6-METHYL-GUANINE IN THE POLYMERASE TEMPLATE PREINSERTION SITE
2HVHA:297-468; D:297-468DDCTP:O6MEG PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HVIA:297-468; D:297-468DDCTP:G PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
3BDPA:297-468DNA POLYMERASE I/DNA COMPLEX
3EYZA:297-468COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA (OPEN FORM)
3EZ5A:297-468; D:298-468COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA , DCTP, AND ZINC (CLOSED FORM).
4BDPA:297-468CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES
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Escherichia coli [TaxId: 562] (14)
1D8YA:324-518CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
1D9DA:324-518CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'
1D9FA:324-518CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'
1DPIA:326-518STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
1KFDA:324-518CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE
1KFSA:324-518DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KLNA:324-518DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KRPA:324-518DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KSPA:324-518DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1QSLA:324-518KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
2KFNA:324-518KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE
2KFZA:324-518KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY
2KZMA:324-518KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
2KZZA:324-518KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY
(-)
Thermus aquaticus [TaxId: 271] (24)
1BGXT:290-422TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
1JXEA:293-422STOFFEL FRAGMENT OF TAQ DNA POLYMERASE I
1KTQA:290-422DNA POLYMERASE
1QSSA:293-422DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QSYA:293-422DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QTMA:293-422DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1TAQA:290-422STRUCTURE OF TAQ DNA POLYMERASE
1TAUA:290-422TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX
2KTQA:295-422OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3KTQA:293-422CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3M8RA:294-422CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-ETHYLATED DTTP
3M8SA:294-422CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-METHYLATED DTTP
3OJUA:294-422SNAPSHOT OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS PROCESSING C5 MODIFIED THYMIDIES
3RR7A:295-422BINARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE
3RR8A:293-422TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRGA:294-422TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRHA:295-422TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDTTP
3RTVA:293-422CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL PRIMER/TEMPLATE DNA
3T3FA:293-422TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND DNITP
4DF4A:294-422CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH 7-(N-(10-HYDROXYDECANOYL)-AMINOPENTINYL)-7-DEAZA-2 -DATP
4DFPA:294-422CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQAUTICUS IN A TERNARY COMPLEX WITH 7-(AMINOPENTINYL)-7-DEAZA-DGTP
4DLGA:293-422TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE
4KTQA:294-422BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
5KTQA:290-422LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP
(-)
Protein domain: Exonuclease domain of T7 DNA polymerase (17)
(-)
Bacteriophage T7 [TaxId: 10760] (17)
1SKRA:1-210T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE AND DDATP
1SKSA:1-210BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SKWA:1-210BINARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL0A:1-210; C:1-210TERNARY 3' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A DISORDERED CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1SL1A:1-210BINARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE
1SL2A:1-210TERNARY 5' COMPLEX OF T7 DNA POLYMERASE WITH A DNA PRIMER/TEMPLATE CONTAINING A CIS-SYN THYMINE DIMER ON THE TEMPLATE AND AN INCOMING NUCLEOTIDE
1T7PA:1-210T7 DNA POLYMERASE COMPLEXED TO DNA PRIMER/TEMPLATE,A NUCLEOSIDE TRIPHOSPHATE, AND ITS PROCESSIVITY FACTOR THIOREDOXIN
1T8EA:1-210T7 DNA POLYMERASE TERNARY COMPLEX WITH DCTP AT THE INSERTION SITE.
1TK0A:1-210T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DDCTP AT THE INSERTION SITE
1TK5A:1-210T7 DNA POLYMERASE BINARY COMPLEX WITH 8 OXO GUANOSINE IN THE TEMPLATING STRAND
1TK8A:1-210T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DAMP AT THE ELONGATION SITE
1TKDA:1-210T7 DNA POLYMERASE TERNARY COMPLEX WITH 8 OXO GUANOSINE AND DCMP AT THE ELONGATION SITE
1X9MA:1-210T7 DNA POLYMERASE IN COMPLEX WITH AN N-2-ACETYLAMINOFLUORENE-ADDUCTED DNA
1X9SA:1-210T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-CTP AS THE INCOMING NUCLEOTIDE.
1X9WA:1-210T7 DNA POLYMERASE IN COMPLEX WITH A PRIMER/TEMPLATE DNA CONTAINING A DISORDERED N-2 AMINOFLUORENE ON THE TEMPLATE, CRYSTALLIZED WITH DIDEOXY-ATP AS THE INCOMING NUCLEOTIDE.
1ZYQA:1-210T7 DNA POLYMERASE IN COMPLEX WITH 8OG AND INCOMING DDATP
2AJQA:1-210; F:1-210STRUCTURE OF REPLICATIVE DNA POLYMERASE PROVIDES INSIGTS INTO THE MECHANISMS FOR PROCESSIVITY, FRAMESHIFTING AND EDITING
(-)
Protein domain: Exonuclease ERI1 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
1W0HA:CRYSTALLOGRAPHIC STRUCTURE OF THE NUCLEASE DOMAIN OF 3'HEXO, A DEDDH FAMILY MEMBER, BOUND TO RAMP
(-)
Protein domain: Exonuclease I (4)
(-)
Escherichia coli K-12 [TaxId: 83333] (3)
2QXFA:PRODUCT BOUND STRUCTURE OF EXONUCLEASE I AT 1.5 ANGSTROM RESOLUTION
3HL8A:CRYSTAL STRUCTURE OF EXONUCLEASE I IN COMPLEX WITH INHIBITOR BCBP
3HP9A:CRYSTAL STRUCTURE OF SSB/EXONUCLEASE I IN COMPLEX WITH INHIBITOR CFAM
(-)
Escherichia coli [TaxId: 562] (1)
1FXXA:THE STRUCTURE OF EXONUCLEASE I SUGGESTS HOW PROCESSIVITY IS ACHIEVED
(-)
Protein domain: Exosome complex exonuclease RRP6 (4)
(-)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (4)
2HBJA:129-420STRUCTURE OF THE YEAST NUCLEAR EXOSOME COMPONENT, RRP6P, REVEALS AN INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN
2HBKA:127-420STRUCTURE OF THE YEAST NUCLEAR EXOSOME COMPONENT, RRP6P, REVEALS AN INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN; PROTEIN IN COMPLEX WITH MN
2HBLA:127-420STRUCTURE OF THE YEAST NUCLEAR EXOSOME COMPONENT, RRP6P, REVEALS AN INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN; PROTEIN IN COMPLEX WITH MN, ZN, AND AMP
2HBMA:127-420STRUCTURE OF THE YEAST NUCLEAR EXOSOME COMPONENT, RRP6P, REVEALS AN INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN; PROTEIN IN COMPLEX WITH MN, ZN, AND UMP
(-)
Protein domain: Hypothetical protein AT5G06450 (2)
(-)
Thale cress (Arabidopsis thaliana) [TaxId: 3702] (2)
1VK0A:; E:; F:; B:; C:; D:X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G06450
2Q3SA:; B:; C:; D:; E:; F:ENSEMBLE REFINEMENT OF THE PROTEIN CRYSTAL STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G06450
(-)
Protein domain: Interferon-stimulated gene 20 kDa protein, ISG20 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
1WLJA:HUMAN ISG20
(-)
Protein domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III (2)
(-)
Escherichia coli [TaxId: 562] (2)
1J53A:STRUCTURE OF THE N-TERMINAL EXONUCLEASE DOMAIN OF THE EPSILON SUBUNIT OF E.COLI DNA POLYMERASE III AT PH 8.5
1J54A:STRUCTURE OF THE N-TERMINAL EXONUCLEASE DOMAIN OF THE EPSILON SUBUNIT OF E.COLI DNA POLYMERASE III AT PH 5.8
(-)
Protein domain: Oligoribonuclease (3)
(-)
Escherichia coli [TaxId: 562] (2)
1YTAA:1-180; B:; C:; D:CRYSTAL STRUCTURE OF OLIGORIBONUCLEASE, THE LONE ESSENTIAL EXORIBONUCLEASE IN ESCHERICHIA COLI
2IGIA:; B:CRYSTAL STRUCTURE OF E. COLI OLIGORIBONUCLEASE
(-)
Haemophilus influenzae [TaxId: 727] (1)
1J9AA:OLIGORIBONUCLEASE
(-)
Protein domain: Ribonuclease D, catalytic domain (1)
(-)
Escherichia coli [TaxId: 562] (1)
1YT3A:1-193CRYSTAL STRUCTURE OF ESCHERICHIA COLI RNASE D, AN EXORIBONUCLEASE INVOLVED IN STRUCTURED RNA PROCESSING
(-)
Protein domain: Ribonuclease T (1)
(-)
Pseudomonas aeruginosa [TaxId: 287] (1)
2F96A:19-220; B:2.1 A CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA RNASE T (RIBONUCLEASE T)
(-)
Protein domain: Three prime repair exonuclease 1, TREX1 (6)
(-)
Mouse (Mus musculus) [TaxId: 10090] (6)
2IOCA:5-234THE CRYSTAL STRUCTURE OF TREX1 EXPLAINS THE 3' NUCLEOTIDE SPECIFICITY AND REVEALS A POLYPROLINE II HELIX FOR PROTEIN PARTENRING
2O4GA:9-234STRUCTURE OF TREX1 IN COMPLEX WITH A NUCLEOTIDE
2O4IA:9-234; B:9-234STRUCTURE OF TREX1 IN COMPLEX WITH DNA
3MXIA:; B:TREX1 3' EXONUCLEASE D18N FAMILIAL CHILBLAIN LUPUS MUTANT
3MXJA:; B:CRYSTAL STRUCTURE OF THE MTREX1 APOPROTEIN
3MXMA:; B:TREX1 3' EXONUCLEASE V201D AICARDI-GOUTIERES SYNDROME MUTANT
(-)
Protein domain: Three prime repair exonuclease 2, TREX2 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
1Y97A:1-228; B:THE HUMAN TREX2 3' EXONUCLEASE STRUCTURE SUGGESTS A MECHANISM FOR EFFICIENT NON-PROCESSIVE DNA CATALYSIS