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(-) Description

Title :  PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GERANYLGERANYLATED KKKSKTKCVIL PEPTIDE PRODUCT
 
Authors :  J. S. Taylor, T. S. Reid, P. J. Casey, L. S. Beese
Date :  01 Nov 02  (Deposition) - 18 Nov 03  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,M  (1x)
Biol. Unit 2:  C,D,N  (1x)
Biol. Unit 3:  E,F,O  (1x)
Biol. Unit 4:  G,H,P  (1x)
Biol. Unit 5:  I,J,Q  (1x)
Biol. Unit 6:  K,L,R  (1x)
Biol. Unit 7:  A,B  (1x)
Biol. Unit 8:  C,D  (1x)
Biol. Unit 9:  E,F  (1x)
Biol. Unit 10:  G,H  (1x)
Biol. Unit 11:  I,J  (1x)
Biol. Unit 12:  K,L  (1x)
Keywords :  Protein Geranylgeranyltransferase Type-I, Ggtase, Geranylgeranyl, Protein Prenylation, Caax, Lipid Modification, Rap2B, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. S. Taylor, T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Structure Of Mammalian Protein Geranylgeranyltransferase Type-I
Embo J. V. 22 5963 2003
PubMed-ID: 14609943  |  Reference-DOI: 10.1093/EMBOJ/CDG571

(-) Compounds

Molecule 1 - PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE- 1 SUBUNIT ALPHA
    ChainsA, C, E, G, I, K
    EC Number2.5.1.58, 2.5.1.59
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidATCC 63134
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneFNTA
    Organism CommonRAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymCAAX FARNESYLTRANSFERASE SUBUNIT ALPHA,FTASE-ALPHA,RAS PROTEINS PRENYLTRANSFERASE SUBUNIT ALPHA,TYPE I PROTEIN GERANYL- GERANYLTRANSFERASE SUBUNIT ALPHA,GGTASE-I-ALPHA
 
Molecule 2 - GERANYLGERANYL TRANSFERASE TYPE-1 SUBUNIT BETA
    ChainsB, D, F, H, J, L
    EC Number2.5.1.59
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidATCC 63134
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GenePGGT1B
    Organism CommonRAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymGERANYLGERANYL TRANSFERASE TYPE I SUBUNIT BETA,GGTASE-I- BETA,TYPE I PROTEIN GERANYL-GERANYLTRANSFERASE SUBUNIT BETA
 
Molecule 3 - FUSION PROTEIN CONSISTING OF TRANSFORMING PROTEIN P21B AND RAS RELATED PROTEIN RAP-2B
    ChainsM, N, O, P, Q, R
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTHE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE GERANYLGERANYL LIPID WAS ADDED BY THE ENZYME.
    SynonymKKKSKTKCVIL PEPTIDE PRODUCT
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456789101112131415161718
Asymmetric Unit ABCDEFGHIJKLMNOPQR
Biological Unit 1 (1x)AB          M     
Biological Unit 2 (1x)  CD         N    
Biological Unit 3 (1x)    EF        O   
Biological Unit 4 (1x)      GH       P  
Biological Unit 5 (1x)        IJ      Q 
Biological Unit 6 (1x)          KL     R
Biological Unit 7 (1x)AB                
Biological Unit 8 (1x)  CD              
Biological Unit 9 (1x)    EF            
Biological Unit 10 (1x)      GH          
Biological Unit 11 (1x)        IJ        
Biological Unit 12 (1x)          KL      

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 31)

Asymmetric Unit (5, 31)
No.NameCountTypeFull Name
1CL7Ligand/IonCHLORIDE ION
2GER6Ligand/IonGERAN-8-YL GERAN
3MES6Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO46Ligand/IonSULFATE ION
5ZN6Ligand/IonZINC ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 5 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 6 (3, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 7 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 8 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 9 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 10 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 11 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 12 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GER-1Ligand/IonGERAN-8-YL GERAN
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:269 , CYS B:271 , HIS B:321 , CYS M:108 , GER M:1108BINDING SITE FOR RESIDUE ZN B 378
02AC2SOFTWAREASP D:269 , CYS D:271 , HIS D:321 , CYS N:208 , GER N:1208BINDING SITE FOR RESIDUE ZN D 378
03AC3SOFTWAREASP F:269 , CYS F:271 , HIS F:321 , CYS O:308 , GER O:1308BINDING SITE FOR RESIDUE ZN F 378
04AC4SOFTWAREASP H:269 , CYS H:271 , HIS H:321 , CYS P:408 , GER P:1408BINDING SITE FOR RESIDUE ZN H 378
05AC5SOFTWAREASP J:269 , CYS J:271 , HIS J:321 , CYS Q:508 , GER Q:1508BINDING SITE FOR RESIDUE ZN J 378
06AC6SOFTWAREASP L:269 , CYS L:271 , HIS L:321 , CYS R:608 , GER R:1608BINDING SITE FOR RESIDUE ZN L 378
07AC7SOFTWAREARG C:287 , ARG C:291 , TYR C:292 , HOH C:922BINDING SITE FOR RESIDUE CL C 801
08AC8SOFTWARELYS D:284 , ILE D:285 , PHE D:286 , GLN D:287BINDING SITE FOR RESIDUE CL D 802
09AC9SOFTWARELYS F:284 , PHE F:286 , GLN F:287BINDING SITE FOR RESIDUE CL F 803
10BC1SOFTWAREARG G:253 , ARG G:287 , ARG G:291 , TYR G:292 , HOH G:913 , HOH G:932BINDING SITE FOR RESIDUE CL G 804
11BC2SOFTWARELYS H:284 , ILE H:285 , PHE H:286 , GLN H:287BINDING SITE FOR RESIDUE CL H 805
12BC3SOFTWARELYS J:281 , LYS J:284 , ILE J:285 , PHE J:286 , GLN J:287BINDING SITE FOR RESIDUE CL J 806
13BC4SOFTWAREARG K:287 , ARG K:291 , TYR K:292 , HOH K:986BINDING SITE FOR RESIDUE CL K 807
14BC5SOFTWAREMES A:901 , HIS B:219 , ARG B:263 , LYS B:266 , TYR B:272 , HOH B:830 , HOH B:833 , GER M:1108BINDING SITE FOR RESIDUE SO4 B 810
15BC6SOFTWAREMES C:902 , HIS D:219 , ARG D:263 , LYS D:266 , TYR D:272 , HOH D:823 , GER N:1208BINDING SITE FOR RESIDUE SO4 D 811
16BC7SOFTWAREHOH E:935 , HIS F:219 , ARG F:263 , LYS F:266 , TYR F:272 , HOH F:843 , GER O:1308BINDING SITE FOR RESIDUE SO4 F 812
17BC8SOFTWAREMES G:904 , HIS H:219 , ARG H:263 , LYS H:266 , TYR H:272 , HOH H:820 , HOH H:828 , GER P:1408BINDING SITE FOR RESIDUE SO4 H 813
18BC9SOFTWAREHIS J:219 , ARG J:263 , LYS J:266 , TYR J:272 , HOH J:823 , GER Q:1508BINDING SITE FOR RESIDUE SO4 J 814
19CC1SOFTWAREMES K:906 , ARG L:263 , LYS L:266 , TYR L:272 , HOH L:855 , GER R:1608BINDING SITE FOR RESIDUE SO4 L 815
20CC2SOFTWARELYS A:164 , TYR A:166 , LYS A:198 , ASN A:199 , TYR A:200 , HIS A:201 , GLN B:212 , HIS B:219 , ARG B:263 , SO4 B:810 , GER M:1108BINDING SITE FOR RESIDUE MES A 901
21CC3SOFTWARELYS C:164 , TYR C:166 , LYS C:198 , ASN C:199 , TYR C:200 , HIS C:201 , GLN D:212 , HIS D:219 , ARG D:263 , SO4 D:811BINDING SITE FOR RESIDUE MES C 902
22CC4SOFTWARELYS E:164 , TYR E:166 , LYS E:198 , ASN E:199 , TYR E:200 , HIS E:201 , HOH E:935 , GLN F:212 , HIS F:219 , ARG F:263 , GER O:1308BINDING SITE FOR RESIDUE MES E 903
23CC5SOFTWARELYS G:164 , TYR G:166 , LYS G:198 , ASN G:199 , TYR G:200 , HIS G:201 , HOH G:931 , GLN H:212 , HIS H:219 , ARG H:263 , SO4 H:813 , GER P:1408BINDING SITE FOR RESIDUE MES G 904
24CC6SOFTWARELYS I:164 , TYR I:166 , LYS I:198 , ASN I:199 , TYR I:200 , HIS I:201 , GLN J:212 , HIS J:219 , ARG J:263BINDING SITE FOR RESIDUE MES I 905
25CC7SOFTWARELYS K:164 , TYR K:166 , LYS K:198 , ASN K:199 , TYR K:200 , HIS K:201 , GLN L:212 , HIS L:219 , ARG L:263 , SO4 L:815 , GER R:1608BINDING SITE FOR RESIDUE MES K 906
26CC8SOFTWAREMES A:901 , ARG B:173 , ASP B:269 , TYR B:272 , TRP B:275 , ZN B:378 , SO4 B:810 , CYS M:108 , ILE M:110BINDING SITE FOR RESIDUE GER M 1108
27CC9SOFTWAREARG D:173 , GLN D:212 , ASP D:269 , TYR D:272 , TRP D:275 , ZN D:378 , SO4 D:811 , CYS N:208 , ILE N:210BINDING SITE FOR RESIDUE GER N 1208
28DC1SOFTWAREMES E:903 , ARG F:173 , ASP F:269 , TYR F:272 , TRP F:275 , ZN F:378 , SO4 F:812 , CYS O:308 , ILE O:310BINDING SITE FOR RESIDUE GER O 1308
29DC2SOFTWAREMES G:904 , ARG H:173 , HIS H:219 , ASP H:269 , TYR H:272 , TRP H:275 , ZN H:378 , SO4 H:813 , CYS P:408 , ILE P:410BINDING SITE FOR RESIDUE GER P 1408
30DC3SOFTWAREARG J:173 , ASP J:269 , TYR J:272 , TRP J:275 , ZN J:378 , SO4 J:814 , CYS Q:508 , ILE Q:510BINDING SITE FOR RESIDUE GER Q 1508
31DC4SOFTWAREMES K:906 , ARG L:173 , GLN L:212 , ASP L:269 , TYR L:272 , TRP L:275 , ZN L:378 , SO4 L:815 , CYS R:608 , ILE R:610BINDING SITE FOR RESIDUE GER R 1608

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N4R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N4R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N4R)

(-) PROSITE Motifs  (1, 30)

Asymmetric Unit (1, 30)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  30A:112-146
C:112-146
E:112-146
G:112-146
I:112-146
K:112-146
A:147-181
C:147-181
E:147-181
G:147-181
I:147-181
K:147-181
A:215-249
C:215-249
E:215-249
G:215-249
I:215-249
K:215-249
A:182-214
C:182-214
E:182-214
G:182-214
I:182-214
K:182-214
A:255-289
C:255-289
E:255-289
G:255-289
I:255-289
K:255-289
Biological Unit 1 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5A:112-146
-
-
-
-
-
A:147-181
-
-
-
-
-
A:215-249
-
-
-
-
-
A:182-214
-
-
-
-
-
A:255-289
-
-
-
-
-
Biological Unit 2 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
C:112-146
-
-
-
-
-
C:147-181
-
-
-
-
-
C:215-249
-
-
-
-
-
C:182-214
-
-
-
-
-
C:255-289
-
-
-
-
Biological Unit 3 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
E:112-146
-
-
-
-
-
E:147-181
-
-
-
-
-
E:215-249
-
-
-
-
-
E:182-214
-
-
-
-
-
E:255-289
-
-
-
Biological Unit 4 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
G:112-146
-
-
-
-
-
G:147-181
-
-
-
-
-
G:215-249
-
-
-
-
-
G:182-214
-
-
-
-
-
G:255-289
-
-
Biological Unit 5 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
I:112-146
-
-
-
-
-
I:147-181
-
-
-
-
-
I:215-249
-
-
-
-
-
I:182-214
-
-
-
-
-
I:255-289
-
Biological Unit 6 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
-
K:112-146
-
-
-
-
-
K:147-181
-
-
-
-
-
K:215-249
-
-
-
-
-
K:182-214
-
-
-
-
-
K:255-289
Biological Unit 7 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5A:112-146
-
-
-
-
-
A:147-181
-
-
-
-
-
A:215-249
-
-
-
-
-
A:182-214
-
-
-
-
-
A:255-289
-
-
-
-
-
Biological Unit 8 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
C:112-146
-
-
-
-
-
C:147-181
-
-
-
-
-
C:215-249
-
-
-
-
-
C:182-214
-
-
-
-
-
C:255-289
-
-
-
-
Biological Unit 9 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
E:112-146
-
-
-
-
-
E:147-181
-
-
-
-
-
E:215-249
-
-
-
-
-
E:182-214
-
-
-
-
-
E:255-289
-
-
-
Biological Unit 10 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
G:112-146
-
-
-
-
-
G:147-181
-
-
-
-
-
G:215-249
-
-
-
-
-
G:182-214
-
-
-
-
-
G:255-289
-
-
Biological Unit 11 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
I:112-146
-
-
-
-
-
I:147-181
-
-
-
-
-
I:215-249
-
-
-
-
-
I:182-214
-
-
-
-
-
I:255-289
-
Biological Unit 12 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
-
K:112-146
-
-
-
-
-
K:147-181
-
-
-
-
-
K:215-249
-
-
-
-
-
K:182-214
-
-
-
-
-
K:255-289

(-) Exons   (10, 60)

Asymmetric Unit (10, 60)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000047231ENSRNOE00000033103chr18:40452883-40452737147PGTB1_RAT1-47476B:18-47
D:18-47
F:18-47
H:18-47
J:18-47
L:18-47
30
30
30
30
30
30
1.2ENSRNOT000000047232ENSRNOE00000033155chr18:40448055-40447937119PGTB1_RAT47-87416B:47-87
D:47-87
F:47-87
H:47-87
J:47-87
L:47-87
41
41
41
41
41
41
1.3ENSRNOT000000047233ENSRNOE00000033179chr18:40439837-4043977068PGTB1_RAT87-109236B:87-109
D:87-109
F:87-109
H:87-109
J:87-109
L:87-109
23
23
23
23
23
23
1.4ENSRNOT000000047234ENSRNOE00000033198chr18:40436689-40436538152PGTB1_RAT110-160516B:110-160
D:110-160
F:110-160
H:110-160
J:110-160
L:110-160
51
51
51
51
51
51
1.5ENSRNOT000000047235ENSRNOE00000033220chr18:40435436-40435304133PGTB1_RAT160-204456B:160-204
D:160-204
F:160-204
H:160-204
J:160-204
L:160-204
45
45
45
45
45
45
1.6ENSRNOT000000047236ENSRNOE00000033239chr18:40423076-4042303146PGTB1_RAT205-220166B:205-220
D:205-220
F:205-220
H:205-220
J:205-220
L:205-220
16
16
16
16
16
16
1.7ENSRNOT000000047237ENSRNOE00000033263chr18:40418461-40418277185PGTB1_RAT220-281626B:220-281
D:220-281
F:220-281
H:220-281
J:220-281
L:220-281
62
62
62
62
62
62
1.8ENSRNOT000000047238ENSRNOE00000033290chr18:40416042-40415934109PGTB1_RAT282-318376B:282-318
D:282-318
F:282-318
H:282-318
J:282-318
L:282-318
37
37
37
37
37
37
1.9ENSRNOT000000047239ENSRNOE00000033312chr18:40410659-40410055605PGTB1_RAT318-377606B:318-363
D:318-363
F:318-363
H:318-363
J:318-363
L:318-363
46
46
46
46
46
46

2.1ENST000002560781ENSE00001189804chr12:25403854-25403685170RASK_HUMAN-00--
2.2aENST000002560782aENSE00000936617chr12:25398329-25398208122RASK_HUMAN1-37370--
2.3ENST000002560783ENSE00001719809chr12:25380346-25380168179RASK_HUMAN38-97600--
2.4ENST000002560784ENSE00001644818chr12:25378707-25378548160RASK_HUMAN97-150540--
2.5bENST000002560785bENSE00001189807chr12:25368494-25368371124RASK_HUMAN151-189396M:106-111 (gaps)
N:206-211 (gaps)
O:306-311 (gaps)
P:406-411 (gaps)
Q:506-511 (gaps)
R:606-611 (gaps)
13
13
13
13
13
13
2.6bENST000002560786bENSE00001740851chr12:25362845-253581824664RASK_HUMAN-00--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4ra_ A: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rA00 A:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: A:112-146               PFTA  PDB: A:147-181               PFTA  PDB: A:182-214             PFTA  PDB: A:215-249               -----PFTA  PDB: A:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r A  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain B from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rb_ B: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rB00 B:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:18-47        ---------------------------------------Exon 1.3  PDB: B:87-109Exon 1.4  PDB: B:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: B:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: B:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: B:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: B:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: B:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r B  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain C from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4rc_ C: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rC00 C:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: C:112-146               PFTA  PDB: C:147-181               PFTA  PDB: C:182-214             PFTA  PDB: C:215-249               -----PFTA  PDB: C:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r C  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain D from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rd_ D: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rD00 D:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:18-47        ---------------------------------------Exon 1.3  PDB: D:87-109Exon 1.4  PDB: D:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: D:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: D:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: D:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: D:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: D:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r D  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain E from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4re_ E: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rE00 E:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: E:112-146               PFTA  PDB: E:147-181               PFTA  PDB: E:182-214             PFTA  PDB: E:215-249               -----PFTA  PDB: E:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r E  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain F from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rf_ F: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rF00 F:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: F:18-47        ---------------------------------------Exon 1.3  PDB: F:87-109Exon 1.4  PDB: F:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: F:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: F:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: F:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: F:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: F:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r F  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain G from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4rg_ G: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rG00 G:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: G:112-146               PFTA  PDB: G:147-181               PFTA  PDB: G:182-214             PFTA  PDB: G:215-249               -----PFTA  PDB: G:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r G  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain H from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rh_ H: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rH00 H:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: H:18-47        ---------------------------------------Exon 1.3  PDB: H:87-109Exon 1.4  PDB: H:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: H:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: H:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: H:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: H:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: H:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r H  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain I from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4ri_ I: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rI00 I:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: I:112-146               PFTA  PDB: I:147-181               PFTA  PDB: I:182-214             PFTA  PDB: I:215-249               -----PFTA  PDB: I:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r I  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain J from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rj_ J: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rJ00 J:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: J:18-47        ---------------------------------------Exon 1.3  PDB: J:87-109Exon 1.4  PDB: J:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: J:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: J:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: J:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: J:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: J:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r J  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain K from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1n4rk_ K: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rK00 K:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK01 K:258-288         -------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK02 K:258-288         -------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK03 K:258-288         -------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK04 K:258-288         -------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK05 K:258-288         -------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK06 K:258-288         -------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK07 K:258-288         -------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK08 K:258-288         -------------------------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK09 K:258-288         -------------------------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK10 K:258-288         -------------------------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK11 K:258-288         -------------------------------------------------------------------------------- Pfam domains (11)
          Pfam domains (12) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK12 K:258-288         -------------------------------------------------------------------------------- Pfam domains (12)
          Pfam domains (13) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK13 K:258-288         -------------------------------------------------------------------------------- Pfam domains (13)
          Pfam domains (14) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK14 K:258-288         -------------------------------------------------------------------------------- Pfam domains (14)
          Pfam domains (15) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK15 K:258-288         -------------------------------------------------------------------------------- Pfam domains (15)
          Pfam domains (16) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK16 K:258-288         -------------------------------------------------------------------------------- Pfam domains (16)
          Pfam domains (17) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK17 K:258-288         -------------------------------------------------------------------------------- Pfam domains (17)
          Pfam domains (18) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK18 K:258-288         -------------------------------------------------------------------------------- Pfam domains (18)
          Pfam domains (19) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK19 K:258-288         -------------------------------------------------------------------------------- Pfam domains (19)
          Pfam domains (20) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK20 K:258-288         -------------------------------------------------------------------------------- Pfam domains (20)
          Pfam domains (21) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK21 K:258-288         -------------------------------------------------------------------------------- Pfam domains (21)
          Pfam domains (22) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK22 K:258-288         -------------------------------------------------------------------------------- Pfam domains (22)
          Pfam domains (23) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK23 K:258-288         -------------------------------------------------------------------------------- Pfam domains (23)
          Pfam domains (24) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK24 K:258-288         -------------------------------------------------------------------------------- Pfam domains (24)
          Pfam domains (25) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK25 K:258-288         -------------------------------------------------------------------------------- Pfam domains (25)
          Pfam domains (26) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK26 K:258-288         -------------------------------------------------------------------------------- Pfam domains (26)
          Pfam domains (27) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK27 K:258-288         -------------------------------------------------------------------------------- Pfam domains (27)
          Pfam domains (28) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK28 K:258-288         -------------------------------------------------------------------------------- Pfam domains (28)
          Pfam domains (29) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK29 K:258-288         -------------------------------------------------------------------------------- Pfam domains (29)
          Pfam domains (30) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1n4rK30 K:258-288         -------------------------------------------------------------------------------- Pfam domains (30)
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: K:112-146               PFTA  PDB: K:147-181               PFTA  PDB: K:182-214             PFTA  PDB: K:215-249               -----PFTA  PDB: K:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n4r K  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain L from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1n4rl_ L: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1n4rL00 L:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL13 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL01 L:289-333                ------------------------------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL14 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL02 L:289-333                ------------------------------ Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL15 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL03 L:289-333                ------------------------------ Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL16 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL04 L:289-333                ------------------------------ Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL17 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL05 L:289-333                ------------------------------ Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------Prenyltrans_2-1n4rL18 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1n4rL06 L:289-333                ------------------------------ Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL07 L:289-333                ------------------------------ Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL08 L:289-333                ------------------------------ Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL09 L:289-333                ------------------------------ Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL10 L:289-333                ------------------------------ Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL11 L:289-333                ------------------------------ Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1n4rL12 L:289-333                ------------------------------ Pfam domains (12)
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: L:18-47        ---------------------------------------Exon 1.3  PDB: L:87-109Exon 1.4  PDB: L:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: L:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: L:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: L:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: L:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: L:318-363 UniProt: 318-377      Transcript 1 (2)
                 1n4r L  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain M from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r M 106 TKCVIL 111

Chain M from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r M 106 T-------KCVIL 111
                            |      108   
                          106     107    

Chain N from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r N 206 TKCVIL 211

Chain N from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r N 206 T-------KCVIL 211
                            |      208   
                          206     207    

Chain O from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r O 306 TKCVIL 311

Chain O from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r O 306 T-------KCVIL 311
                            |      308   
                          306     307    

Chain P from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r P 406 TKCVIL 411

Chain P from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r P 406 T-------KCVIL 411
                            |      408   
                          406     407    

Chain Q from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r Q 506 TKCVIL 511

Chain Q from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r Q 506 T-------KCVIL 511
                            |      508   
                          506     507    

Chain R from PDB  Type:PROTEIN  Length:6
 aligned with RAP2B_HUMAN | P61225 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:6
          RAP2B_HUMAN   178 SACVIL 183
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1n4r R 606 TKCVIL 611

Chain R from PDB  Type:PROTEIN  Length:6
 aligned with RASK_HUMAN | P01116 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:13
                                   186   
           RASK_HUMAN   177 TPGCVKIKKCIIM 189
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .-------..... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
               Transcript 2 Exon 2.5b     Transcript 2
                 1n4r R 606 T-------KCVIL 611
                            |      608   
                          606     607    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (2, 12)

Asymmetric Unit

(-) Pfam Domains  (3, 48)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Family: PPTA (36)
3aPPTA-1n4rK01K:258-288
3bPPTA-1n4rK02K:258-288
3cPPTA-1n4rK03K:258-288
3dPPTA-1n4rK04K:258-288
3ePPTA-1n4rK05K:258-288
3fPPTA-1n4rK06K:258-288
3gPPTA-1n4rK07K:258-288
3hPPTA-1n4rK08K:258-288
3iPPTA-1n4rK09K:258-288
3jPPTA-1n4rK10K:258-288
3kPPTA-1n4rK11K:258-288
3lPPTA-1n4rK12K:258-288
3mPPTA-1n4rK13K:258-288
3nPPTA-1n4rK14K:258-288
3oPPTA-1n4rK15K:258-288
3pPPTA-1n4rK16K:258-288
3qPPTA-1n4rK17K:258-288
3rPPTA-1n4rK18K:258-288
3sPPTA-1n4rK19K:258-288
3tPPTA-1n4rK20K:258-288
3uPPTA-1n4rK21K:258-288
3vPPTA-1n4rK22K:258-288
3wPPTA-1n4rK23K:258-288
3xPPTA-1n4rK24K:258-288
3yPPTA-1n4rK25K:258-288
3zPPTA-1n4rK26K:258-288
3aaPPTA-1n4rK27K:258-288
3abPPTA-1n4rK28K:258-288
3acPPTA-1n4rK29K:258-288
3adPPTA-1n4rK30K:258-288

(-) Gene Ontology  (88, 160)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (FNTA_RAT | Q04631)
molecular function
    GO:0004662    CAAX-protein geranylgeranyltransferase activity    Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0019840    isoprenoid binding    Interacting selectively and non-covalently with any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0004659    prenyltransferase activity    Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004660    protein farnesyltransferase activity    Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate.
    GO:0004661    protein geranylgeranyltransferase activity    Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
    GO:0008318    protein prenyltransferase activity    Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0051771    negative regulation of nitric-oxide synthase biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
    GO:0045787    positive regulation of cell cycle    Any process that activates or increases the rate or extent of progression through the cell cycle.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0051770    positive regulation of nitric-oxide synthase biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric oxide synthase enzyme.
    GO:0018343    protein farnesylation    The covalent attachment of a farnesyl group to a protein.
    GO:0018344    protein geranylgeranylation    The covalent attachment of a geranylgeranyl group to a protein.
    GO:0018342    protein prenylation    The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0010035    response to inorganic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
cellular component
    GO:0005953    CAAX-protein geranylgeranyltransferase complex    A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005965    protein farnesyltransferase complex    A protein complex that possesses protein farnesyltransferase activity.

Chain B,D,F,H,J,L   (PGTB1_RAT | P53610)
molecular function
    GO:0004662    CAAX-protein geranylgeranyltransferase activity    Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0019840    isoprenoid binding    Interacting selectively and non-covalently with any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0004659    prenyltransferase activity    Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004661    protein geranylgeranyltransferase activity    Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051771    negative regulation of nitric-oxide synthase biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
    GO:0045787    positive regulation of cell cycle    Any process that activates or increases the rate or extent of progression through the cell cycle.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0018344    protein geranylgeranylation    The covalent attachment of a geranylgeranyl group to a protein.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
cellular component
    GO:0005953    CAAX-protein geranylgeranyltransferase complex    A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane.

Chain M,N,O,P,Q,R   (RASK_HUMAN | P01116)
molecular function
    GO:0019003    GDP binding    Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
    GO:0019002    GMP binding    Interacting selectively and non-covalently with GMP, guanosine monophosphate.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0030275    LRR domain binding    Interacting selectively and non-covalently with a LRR domain (leucine rich repeats) of a protein.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0038128    ERBB2 signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0007265    Ras protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state.
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0019221    cytokine-mediated signaling pathway    A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0038002    endocrine signaling    The transfer of information from one cell to another, where an endocrine hormone is transported from the signal-producing cell to the receiving cell via the circulatory system (via blood, lymph or cerebrospinal fluid). The signaling cell and the receiving cell are often distant to each other.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0060441    epithelial tube branching involved in lung morphogenesis    The process in which a highly ordered sequence of patterning events generates the branched epithelial tubes of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units.
    GO:0021897    forebrain astrocyte development    The process aimed at the progression of an astrocyte that resides in the forebrain, from initial commitment of the cell to its fate, to the fully functional differentiated cell. An astrocyte is the most abundant type of glial cell. Astrocytes provide support for neurons and regulate the environment in which they function.
    GO:0048873    homeostasis of number of cells within a tissue    Any biological process involved in the maintenance of the steady-state number of cells within a population of cells in a tissue.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0045596    negative regulation of cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
    GO:0043406    positive regulation of MAP kinase activity    Any process that activates or increases the frequency, rate or extent of MAP kinase activity.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0035022    positive regulation of Rac protein signal transduction    Any process that activates or increases the frequency, rate or extent of Rac protein signal transduction.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0051000    positive regulation of nitric-oxide synthase activity    Any process that activates or increases the activity of the enzyme nitric-oxide synthase.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0048169    regulation of long-term neuronal synaptic plasticity    A process that modulates long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers.
    GO:0031647    regulation of protein stability    Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
    GO:0032228    regulation of synaptic transmission, GABAergic    Any process that modulates the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA).
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0051385    response to mineralocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
    GO:0035176    social behavior    Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.
    GO:0002223    stimulatory C-type lectin receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
    GO:0051146    striated muscle cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a striated muscle cell; striated muscle fibers are divided by transverse bands into striations, and cardiac and voluntary muscle are types of striated muscle.
    GO:0008542    visual learning    Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0031234    extrinsic component of cytoplasmic side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain M,N,O,P,Q,R   (RAP2B_HUMAN | P61225)
molecular function
    GO:0019003    GDP binding    Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
biological process
    GO:0032486    Rap protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Rap family of proteins switching to a GTP-bound active state.
    GO:0090557    establishment of endothelial intestinal barrier    The establishment of a barrier between endothelial cell layers of the intestine to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.
    GO:0030033    microvillus assembly    Formation of a microvillus, a thin cylindrical membrane-covered projection on the surface of a cell.
    GO:0030336    negative regulation of cell migration    Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0070527    platelet aggregation    The adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0031954    positive regulation of protein autophosphorylation    Any process that activates or increases the frequency, rate or extent of the phosphorylation by a protein of one or more of its own residues.
    GO:0061097    regulation of protein tyrosine kinase activity    Any process that modulates the rate, frequency, or extent of protein tyrosine kinase activity.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
cellular component
    GO:0005923    bicellular tight junction    An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
    GO:0044291    cell-cell contact zone    Extended zone of intimate apposition between two cells containing one or more types of intercellular junctions, e.g., the intercalated disk of muscle.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0055037    recycling endosome    An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
    GO:0055038    recycling endosome membrane    The lipid bilayer surrounding a recycling endosome.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FNTA_RAT | Q046311d8d 1d8e 1fpp 1ft1 1ft2 1fti 1hz7 1jcr 1jcs 1kzo 1kzp 1kzr 1n4p 1n4q 1n4s 1n94 1n95 1n9a 1ni1 1nl4 1o1r 1o1s 1o1t 1o5m 1qbq 1qe2 1s64 1sa5 1tn7 1tn8 1tnb 1tno 1tnu 1tny 1tnz 1x81 2bed 2fti 2r2l 2zir 2zis 3dpy 3e30 3e32 3e33 3e34 3eu5 3euv 3fti 3ksl 3ksq 3pz4 4gtm 4gto 4gtp 4gtq 4gtr
        PGTB1_RAT | P536101n4p 1n4q 1n4s 1s64 1tnb 1tno 1tnu 1tny 1tnz
        RAP2B_HUMAN | P612251n4p 1n4q
        RASK_HUMAN | P011161d8d 1d8e 1kzo 1kzp 1n4p 1n4q 1n4s 3gft 4dsn 4dso 4dst 4dsu 4epr 4ept 4epv 4epw 4epx 4epy 4l8g 4ldj 4lpk 4lrw 4luc 4lv6 4lyf 4lyh 4lyj 4m1o 4m1s 4m1t 4m1w 4m1y 4m21 4m22 4nmm 4obe 4pzy 4pzz 4q01 4q02 4q03 4ql3 4tq9 4tqa 4wa7 5f2e 5kyk 5tar 5tb5 5uqw 5us4 5usj 5v6s 5v6v 5xco

(-) Related Entries Specified in the PDB File

1d8d CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION
1dce CRYSTAL STRUCTURE OF RAB GERANYLGERANYLTRANSFERASE FROM RAT BRAIN
1fpp PROTEIN FARNESYLTRANSFERASE COMPLEX WITH FARNESYL DIPHOSPHATE
1ft1 CRYSTAL STRUCTURE OF PROTEIN FARNESYLTRANSFERASE AT 2.25 ANGSTROMS RESOLUTION
1kzo PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYLATED K-RAS4B PEPTIDE PRODUCT AND FARNESYL DIPHOSPHATE SUBSTRATE BOUND SIMULTANEOUSLY
1kzp PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A FARNESYLATED K-RAS4B PEPTIDE PRODUCT
1n4p GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH GERANYLGERANYL DIPHOSPHATE
1n4q GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP ANALOG AND A KKKSKTKCVIL PEPTIDE
1n4s GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH GGPP AND A GERANYLGERANYLATED KKKSKTKCVIL PEPTIDE PRODUCT
1qbq STRUCTURE OF RAT FARNESYL PROTEIN TRANSFERASE COMPLEXED WITH A CVIM PEPTIDE AND -HYDROXYFARNESYLPHOSPHONIC ACID