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(-) Description

Title :  FTASE IN COMPLEX WITH BMS ANALOGUE 14
 
Authors :  Z. Guo, E. A. Stigter, R. S. Bon, H. Waldmann, W. Blankenfeldt, R. S. Good
Date :  29 Aug 12  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Prenylation, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Stigter, Z. Guo, R. S. Bon, Y. W. Wu, A. Choidas, A. Wolf, S. Menninger, H. Waldmann, W. Blankenfeldt, R. S. Goody
Development Of Selective, Potent Rabggtase Inhibitors
J. Med. Chem. V. 55 8330 2012
PubMed-ID: 22963166  |  Reference-DOI: 10.1021/JM300624S

(-) Compounds

Molecule 1 - PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE- 1 SUBUNIT ALPHA
    Chains: A
    EC Number: 2.5.1.58, 2.5.1.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGATEV
    Expression System Strain: BL21 CODON-PLUS RIL (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FNTA
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: CAAX FARNESYLTRANSFERASE SUBUNIT ALPHA, FTASE-ALPHA, RAS PROTEINS PRENYLTRANSFERASE SUBUNIT ALPHA, TYPE I PROTEIN GERANYL- GERANYLTRANSFERASE SUBUNIT ALPHA, GGTASE-I-ALPHA
 
Molecule 2 - PROTEIN FARNESYLTRANSFERASE SUBUNIT BETA
    Chains: B
    EC Number: 2.5.1.58
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET27B
    Expression System Strain: BL21 CODON-PLUS RIL (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL 10 RESIDUES DELETED
    Gene: FNTB
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: FTASE-BETA, CAAX FARNESYLTRANSFERASE SUBUNIT BETA, RAS PROTEINS PRENYLTRANSFERASE SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
17TO1Ligand/Ion4-({(3R)-7-CYANO-4-[(4-METHOXYPHENYL)SULFONYL]-1-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-2,3,4,5-TETRAHYDRO-1H-1,4-BENZODIAZEPIN-3-YL}METHYL)PHENYLTRIFLUOROMETHANESULFONATE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3FPP1Ligand/IonFARNESYL DIPHOSPHATE
4ZN1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:297 , CYS B:299 , HIS B:362 , 7TO B:502BINDING SITE FOR RESIDUE ZN B 501
2AC2SOFTWARELEU B:96 , TRP B:102 , TYR B:154 , ARG B:202 , TYR B:205 , CYS B:206 , CYS B:254 , ASP B:297 , CYS B:299 , TRP B:303 , ASP B:359 , TYR B:361 , HIS B:362 , ZN B:501 , FPP B:503 , HOH B:601 , HOH B:645 , HOH B:758 , HOH B:873BINDING SITE FOR RESIDUE 7TO B 502
3AC3SOFTWARELYS A:164 , TYR A:200 , ARG B:202 , HIS B:248 , TYR B:251 , ARG B:291 , LYS B:294 , TYR B:300 , 7TO B:502 , HOH B:641 , HOH B:682BINDING SITE FOR RESIDUE FPP B 503
4AC4SOFTWAREALA B:92 , TYR B:93 , ARG B:358 , ASP B:359 , HOH B:873BINDING SITE FOR RESIDUE DMS B 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GTO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GTO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GTO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GTO)

(-) Exons   (0, 0)

(no "Exon" information available for 4GTO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:317
                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4gtoa_ A: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gto A  54 GFLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSRE 370
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       


Chain B from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gtob_ B: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.eehhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....ee......eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.........hhhhhhhhhh..............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..................hhhhhh.hhhhhhhhhhhhh............hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhheeee..eeee....hhhhh..........hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gto B  18 VWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVMGVPENVLQPTHPVYNIGPDKVIQATTHFLQKPVPGF 423
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GTO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GTO)

(-) Gene Ontology  (34, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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  FNTB_RAT | Q02293
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FNTA_RAT | Q04631: 1d8d 1d8e 1fpp 1ft1 1ft2 1fti 1hz7 1jcr 1jcs 1kzo 1kzp 1kzr 1n4p 1n4q 1n4r 1n4s 1n94 1n95 1n9a 1ni1 1nl4 1o1r 1o1s 1o1t 1o5m 1qbq 1qe2 1s64 1sa5 1tn7 1tn8 1tnb 1tno 1tnu 1tny 1tnz 1x81 2bed 2fti 2r2l 2zir 2zis 3dpy 3e30 3e32 3e33 3e34 3eu5 3euv 3fti 3ksl 3ksq 3pz4 4gtm 4gtp 4gtq 4gtr
        FNTB_RAT | Q02293: 1d8d 1d8e 1fpp 1ft1 1ft2 1fti 1hz7 1jcr 1jcs 1kzo 1kzp 1kzr 1n94 1n95 1n9a 1ni1 1nl4 1o1r 1o1s 1o1t 1o5m 1qbq 1qe2 1sa5 1tn7 1tn8 1x81 2bed 2fti 2r2l 2zir 2zis 3dpy 3e30 3e32 3e33 3e34 3eu5 3euv 3fti 3ksl 3ksq 3pz4 4gtm 4gtp 4gtq 4gtr

(-) Related Entries Specified in the PDB File

4gtm 4gtp 4gtq 4gtr 4gts 4gtt 4gtv