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(-) Description

Title :  RAT PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP ANALOG AND A KKKSKTKCVIM PEPTIDE DERIVED FROM K-RAS4B
 
Authors :  T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Date :  11 Jun 04  (Deposition) - 02 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,M  (1x)
Biol. Unit 2:  C,D,N  (1x)
Biol. Unit 3:  E,F,O  (1x)
Biol. Unit 4:  G,H,P  (1x)
Biol. Unit 5:  I,J,Q  (1x)
Biol. Unit 6:  K,L,R  (1x)
Keywords :  Ggtase-I, Geranylgeranyltransferase Type-I, Geranylgeranyl Transferase, Prenyltransferase, Caax, Ras, K-Ras, Lipid Modification, Prenylation, Substrate Selectivity (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. S. Reid, K. L. Terry, P. J. Casey, L. S. Beese
Crystallographic Analysis Of Caax Prenyltransferases Complexed With Substrates Defines Rules Of Protein Substrate Selectivity.
J. Mol. Biol. V. 343 417 2004
PubMed-ID: 15451670  |  Reference-DOI: 10.1016/J.JMB.2004.08.056
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GERANYLGERANYLTRANSFERASE TYPE I ALPHA SUBUNIT
    ChainsA, C, E, G, I, K
    EC Number2.5.1.59
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneFNTA
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymTYPE I PROTEIN GERANYL-GERANYLTRANSFERASE ALPHA SUBUNIT, GGTASE-I-ALPHA
 
Molecule 2 - GERANYLGERANYL TRANSFERASE TYPE I BETA SUBUNIT
    ChainsB, D, F, H, J, L
    EC Number2.5.1.59
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GenePGGT1B
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymTYPE I PROTEIN GERANYL-GERANYLTRANSFERASE BETA SUBUNIT, GGTASE-I-BETA
 
Molecule 3 - C-K-RAS2 PROTEIN ISOFORM B
    ChainsM, N, O, P, Q, R
    EngineeredYES
    FragmentC-TERMINUS
    Other DetailsTHE SUBSTRATE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE NATURALLY EXISTS IN HOMO SAPIENS (HUMAN).
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456789101112131415161718
Asymmetric Unit ABCDEFGHIJKLMNOPQR
Biological Unit 1 (1x)AB          M     
Biological Unit 2 (1x)  CD         N    
Biological Unit 3 (1x)    EF        O   
Biological Unit 4 (1x)      GH       P  
Biological Unit 5 (1x)        IJ      Q 
Biological Unit 6 (1x)          KL     R

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM6Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN6Ligand/IonZINC ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MGM1Ligand/Ion2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE
4ZN-1Ligand/IonZINC ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:269 , CYS B:271 , HIS B:321 , CYS M:8BINDING SITE FOR RESIDUE ZN B 378
02AC2SOFTWAREASP D:269 , CYS D:271 , HIS D:321 , CYS N:8BINDING SITE FOR RESIDUE ZN D 378
03AC3SOFTWAREASP F:269 , CYS F:271 , HIS F:321 , CYS O:8BINDING SITE FOR RESIDUE ZN F 378
04AC4SOFTWAREASP H:269 , CYS H:271 , HIS H:321 , CYS P:8BINDING SITE FOR RESIDUE ZN H 378
05AC5SOFTWAREASP J:269 , CYS J:271 , HIS J:321 , CYS Q:8BINDING SITE FOR RESIDUE ZN J 378
06AC6SOFTWAREASP L:269 , CYS L:271 , HIS L:321 , CYS R:8BINDING SITE FOR RESIDUE ZN L 378
07AC7SOFTWARELYS D:284 , ILE D:285 , PHE D:286 , GLN D:287BINDING SITE FOR RESIDUE CL D 379
08AC8SOFTWARELYS F:284 , ILE F:285 , PHE F:286 , GLN F:287BINDING SITE FOR RESIDUE CL F 379
09AC9SOFTWARELYS H:284 , ILE H:285 , PHE H:286 , GLN H:287BINDING SITE FOR RESIDUE CL H 379
10BC1SOFTWARELYS L:284 , ILE L:285 , PHE L:286 , GLN L:287BINDING SITE FOR RESIDUE CL L 379
11BC2SOFTWARECYS F:338 , LYS F:339 , THR F:348 , ARG F:349BINDING SITE FOR RESIDUE MES F 380
12BC3SOFTWARECYS B:338 , LYS B:339 , THR B:348 , ARG B:349BINDING SITE FOR RESIDUE MES B 379
13BC4SOFTWARELYS A:164 , LYS A:198 , TYR A:200 , ARG B:173 , HIS B:219 , ARG B:263 , LYS B:266 , TYR B:272 , TRP B:275 , HOH B:396 , HOH B:398 , HOH B:412 , ILE M:10BINDING SITE FOR RESIDUE MGM B 380
14BC5SOFTWARELYS C:164 , LYS C:198 , TYR C:200 , HOH C:401 , ARG D:173 , HIS D:219 , ARG D:263 , LYS D:266 , TYR D:272 , TRP D:275 , HOH D:414 , HOH D:428 , HOH D:429 , ILE N:10BINDING SITE FOR RESIDUE MGM D 380
15BC6SOFTWARELYS E:164 , LYS E:198 , TYR E:200 , ARG F:173 , HIS F:219 , ARG F:263 , LYS F:266 , TYR F:272 , TRP F:275 , HOH F:408 , HOH F:423 , HOH F:427 , HOH F:431 , HOH F:433 , HOH F:437 , VAL O:9 , ILE O:10BINDING SITE FOR RESIDUE MGM F 381
16BC7SOFTWARELYS G:164 , TYR G:200 , ARG H:173 , HIS H:219 , ARG H:263 , LYS H:266 , TYR H:272 , TRP H:275 , HOH H:392 , HOH H:404 , HOH H:408 , ILE P:10BINDING SITE FOR RESIDUE MGM H 380
17BC8SOFTWARELYS I:164 , TYR I:200 , HOH I:406 , ARG J:173 , HIS J:219 , ARG J:263 , LYS J:266 , TYR J:272 , TRP J:275 , HOH J:401 , HOH J:414 , HOH J:424 , HOH J:425 , ILE Q:10BINDING SITE FOR RESIDUE MGM J 379
18BC9SOFTWARELYS K:164 , LYS K:198 , TYR K:200 , HOH K:428 , ARG L:173 , HIS L:219 , ARG L:263 , LYS L:266 , TYR L:272 , TRP L:275 , HOH L:429 , HOH L:438 , HOH L:460 , HOH L:473 , VAL R:9 , ILE R:10BINDING SITE FOR RESIDUE MGM L 380

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TNO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TNO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TNO)

(-) PROSITE Motifs  (1, 30)

Asymmetric Unit (1, 30)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  30A:112-146
C:112-146
E:112-146
G:112-146
I:112-146
K:112-146
A:147-181
C:147-181
E:147-181
G:147-181
I:147-181
K:147-181
A:215-249
C:215-249
E:215-249
G:215-249
I:215-249
K:215-249
A:182-214
C:182-214
E:182-214
G:182-214
I:182-214
K:182-214
A:255-289
C:255-289
E:255-289
G:255-289
I:255-289
K:255-289
Biological Unit 1 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5A:112-146
-
-
-
-
-
A:147-181
-
-
-
-
-
A:215-249
-
-
-
-
-
A:182-214
-
-
-
-
-
A:255-289
-
-
-
-
-
Biological Unit 2 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
C:112-146
-
-
-
-
-
C:147-181
-
-
-
-
-
C:215-249
-
-
-
-
-
C:182-214
-
-
-
-
-
C:255-289
-
-
-
-
Biological Unit 3 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
E:112-146
-
-
-
-
-
E:147-181
-
-
-
-
-
E:215-249
-
-
-
-
-
E:182-214
-
-
-
-
-
E:255-289
-
-
-
Biological Unit 4 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
G:112-146
-
-
-
-
-
G:147-181
-
-
-
-
-
G:215-249
-
-
-
-
-
G:182-214
-
-
-
-
-
G:255-289
-
-
Biological Unit 5 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
I:112-146
-
-
-
-
-
I:147-181
-
-
-
-
-
I:215-249
-
-
-
-
-
I:182-214
-
-
-
-
-
I:255-289
-
Biological Unit 6 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PFTAPS51147 Protein prenyltransferases alpha subunit repeat profile.FNTA_RAT112-146
 
 
 
 
 
147-181
 
 
 
 
 
215-249
 
 
 
 
 
182-214
 
 
 
 
 
255-289
 
 
 
 
 
  5-
-
-
-
-
K:112-146
-
-
-
-
-
K:147-181
-
-
-
-
-
K:215-249
-
-
-
-
-
K:182-214
-
-
-
-
-
K:255-289

(-) Exons   (9, 54)

Asymmetric Unit (9, 54)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000047231ENSRNOE00000033103chr18:40452883-40452737147PGTB1_RAT1-47476B:18-47
D:18-47
F:18-47
H:18-47
J:18-47
L:18-47
30
30
30
30
30
30
1.2ENSRNOT000000047232ENSRNOE00000033155chr18:40448055-40447937119PGTB1_RAT47-87416B:47-87
D:47-87
F:47-87
H:47-87
J:47-87
L:47-87
41
41
41
41
41
41
1.3ENSRNOT000000047233ENSRNOE00000033179chr18:40439837-4043977068PGTB1_RAT87-109236B:87-109
D:87-109
F:87-109
H:87-109
J:87-109
L:87-109
23
23
23
23
23
23
1.4ENSRNOT000000047234ENSRNOE00000033198chr18:40436689-40436538152PGTB1_RAT110-160516B:110-160
D:110-160
F:110-160
H:110-160
J:110-160
L:110-160
51
51
51
51
51
51
1.5ENSRNOT000000047235ENSRNOE00000033220chr18:40435436-40435304133PGTB1_RAT160-204456B:160-204
D:160-204
F:160-204
H:160-204
J:160-204
L:160-204
45
45
45
45
45
45
1.6ENSRNOT000000047236ENSRNOE00000033239chr18:40423076-4042303146PGTB1_RAT205-220166B:205-220
D:205-220
F:205-220
H:205-220
J:205-220
L:205-220
16
16
16
16
16
16
1.7ENSRNOT000000047237ENSRNOE00000033263chr18:40418461-40418277185PGTB1_RAT220-281626B:220-281
D:220-281
F:220-281
H:220-281
J:220-281
L:220-281
62
62
62
62
62
62
1.8ENSRNOT000000047238ENSRNOE00000033290chr18:40416042-40415934109PGTB1_RAT282-318376B:282-318
D:282-318
F:282-318
H:282-318
J:282-318
L:282-318
37
37
37
37
37
37
1.9ENSRNOT000000047239ENSRNOE00000033312chr18:40410659-40410055605PGTB1_RAT318-377606B:318-363
D:318-363
F:318-363
H:318-363
J:318-363
L:318-363
46
46
46
46
46
46

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnoa_ A: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoA00 A:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: A:112-146               PFTA  PDB: A:147-181               PFTA  PDB: A:182-214             PFTA  PDB: A:215-249               -----PFTA  PDB: A:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno A  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain B from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnob_ B: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoB00 B:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:18-47        ---------------------------------------Exon 1.3  PDB: B:87-109Exon 1.4  PDB: B:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: B:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: B:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: B:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: B:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: B:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno B  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain C from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnoc_ C: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoC00 C:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: C:112-146               PFTA  PDB: C:147-181               PFTA  PDB: C:182-214             PFTA  PDB: C:215-249               -----PFTA  PDB: C:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno C  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain D from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnod_ D: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoD00 D:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:18-47        ---------------------------------------Exon 1.3  PDB: D:87-109Exon 1.4  PDB: D:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: D:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: D:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: D:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: D:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: D:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno D  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain E from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnoe_ E: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoE00 E:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: E:112-146               PFTA  PDB: E:147-181               PFTA  PDB: E:182-214             PFTA  PDB: E:215-249               -----PFTA  PDB: E:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno E  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain F from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnof_ F: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoF00 F:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: F:18-47        ---------------------------------------Exon 1.3  PDB: F:87-109Exon 1.4  PDB: F:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: F:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: F:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: F:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: F:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: F:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno F  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain G from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnog_ G: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoG00 G:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: G:112-146               PFTA  PDB: G:147-181               PFTA  PDB: G:182-214             PFTA  PDB: G:215-249               -----PFTA  PDB: G:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno G  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain H from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnoh_ H: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoH00 H:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: H:18-47        ---------------------------------------Exon 1.3  PDB: H:87-109Exon 1.4  PDB: H:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: H:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: H:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: H:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: H:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: H:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno H  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain I from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnoi_ I: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoI00 I:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: I:112-146               PFTA  PDB: I:147-181               PFTA  PDB: I:182-214             PFTA  PDB: I:215-249               -----PFTA  PDB: I:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno I  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain J from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnoj_ J: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoJ00 J:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: J:18-47        ---------------------------------------Exon 1.3  PDB: J:87-109Exon 1.4  PDB: J:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: J:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: J:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: J:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: J:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: J:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno J  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain K from PDB  Type:PROTEIN  Length:314
 aligned with FNTA_RAT | Q04631 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:314
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
             FNTA_RAT    55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
               SCOP domains d1tnok_ K: Protein farnesyltransferase alpha-subunit                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoK00 K:55-368  [code=1.25.40.120, no name defined]                                                                                                                                                                                                                                                                      CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK01 K:258-288         -------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK02 K:258-288         -------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK03 K:258-288         -------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK04 K:258-288         -------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK05 K:258-288         -------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK06 K:258-288         -------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK07 K:258-288         -------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK08 K:258-288         -------------------------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK09 K:258-288         -------------------------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK10 K:258-288         -------------------------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK11 K:258-288         -------------------------------------------------------------------------------- Pfam domains (11)
          Pfam domains (12) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK12 K:258-288         -------------------------------------------------------------------------------- Pfam domains (12)
          Pfam domains (13) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK13 K:258-288         -------------------------------------------------------------------------------- Pfam domains (13)
          Pfam domains (14) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK14 K:258-288         -------------------------------------------------------------------------------- Pfam domains (14)
          Pfam domains (15) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK15 K:258-288         -------------------------------------------------------------------------------- Pfam domains (15)
          Pfam domains (16) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK16 K:258-288         -------------------------------------------------------------------------------- Pfam domains (16)
          Pfam domains (17) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK17 K:258-288         -------------------------------------------------------------------------------- Pfam domains (17)
          Pfam domains (18) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK18 K:258-288         -------------------------------------------------------------------------------- Pfam domains (18)
          Pfam domains (19) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK19 K:258-288         -------------------------------------------------------------------------------- Pfam domains (19)
          Pfam domains (20) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK20 K:258-288         -------------------------------------------------------------------------------- Pfam domains (20)
          Pfam domains (21) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK21 K:258-288         -------------------------------------------------------------------------------- Pfam domains (21)
          Pfam domains (22) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK22 K:258-288         -------------------------------------------------------------------------------- Pfam domains (22)
          Pfam domains (23) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK23 K:258-288         -------------------------------------------------------------------------------- Pfam domains (23)
          Pfam domains (24) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK24 K:258-288         -------------------------------------------------------------------------------- Pfam domains (24)
          Pfam domains (25) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK25 K:258-288         -------------------------------------------------------------------------------- Pfam domains (25)
          Pfam domains (26) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK26 K:258-288         -------------------------------------------------------------------------------- Pfam domains (26)
          Pfam domains (27) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK27 K:258-288         -------------------------------------------------------------------------------- Pfam domains (27)
          Pfam domains (28) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK28 K:258-288         -------------------------------------------------------------------------------- Pfam domains (28)
          Pfam domains (29) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK29 K:258-288         -------------------------------------------------------------------------------- Pfam domains (29)
          Pfam domains (30) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PPTA-1tnoK30 K:258-288         -------------------------------------------------------------------------------- Pfam domains (30)
         Sec.struct. author ..........hhhhhhhhh...............ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------PFTA  PDB: K:112-146               PFTA  PDB: K:147-181               PFTA  PDB: K:182-214             PFTA  PDB: K:215-249               -----PFTA  PDB: K:255-289               ------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tno K  55 FLSLDSPTYVLYRDRAEWADIDPVPQNDGPSPVVQIIYSEKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNYQVWHHRRVLVEWLKDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFRLWDNELQYVDQLLKEDVRNNSVWNQRHFVISNTTGYSDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSRYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS 368
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    

Chain L from PDB  Type:PROTEIN  Length:346
 aligned with PGTB1_RAT | P53610 from UniProtKB/Swiss-Prot  Length:377

    Alignment length:346
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      
            PGTB1_RAT    18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
               SCOP domains d1tnol_ L: Protein farnesyltransferase, beta-subunit                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1tnoL00 L:18-363  [code=1.50.10.20, no name defined]                                                                                                                                                                                                                                                                                                       CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL13 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL01 L:289-333                ------------------------------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL14 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL02 L:289-333                ------------------------------ Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL15 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL03 L:289-333                ------------------------------ Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL16 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL04 L:289-333                ------------------------------ Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL17 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL05 L:289-333                ------------------------------ Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------Prenyltrans_2-1tnoL18 L:110-212                                                                        ----------------------------------------------------------------------------Prenyltrans-1tnoL06 L:289-333                ------------------------------ Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL07 L:289-333                ------------------------------ Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL08 L:289-333                ------------------------------ Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL09 L:289-333                ------------------------------ Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL10 L:289-333                ------------------------------ Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL11 L:289-333                ------------------------------ Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Prenyltrans-1tnoL12 L:289-333                ------------------------------ Pfam domains (12)
         Sec.struct. author ...hhhhhhhhhhhhhheehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.ee.......hhhhhee.........................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.......ee....eehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: L:18-47        ---------------------------------------Exon 1.3  PDB: L:87-109Exon 1.4  PDB: L:110-160 UniProt: 110-160          --------------------------------------------Exon 1.6        -------------------------------------------------------------Exon 1.8  PDB: L:282-318             --------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.2  PDB: L:47-87 UniProt: 47-87    ------------------------------------------------------------------------Exon 1.5  PDB: L:160-204 UniProt: 160-204    ---------------Exon 1.7  PDB: L:220-281 UniProt: 220-281                     ------------------------------------Exon 1.9  PDB: L:318-363 UniProt: 318-377      Transcript 1 (2)
                 1tno L  18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDLHQSWKT 363
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357      

Chain M from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno M   6 TKCVIM  11

Chain N from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno N   6 TKCVIM  11

Chain O from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno O   6 TKCVIM  11

Chain P from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno P   6 TKCVIM  11

Chain Q from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno Q   6 TKCVIM  11

Chain R from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 1tno R   6 TKCVIM  11

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (2, 12)

Asymmetric Unit

(-) Pfam Domains  (3, 48)

Asymmetric Unit
(-)
Clan: 6_Hairpin (120)
(-)
Family: PPTA (36)
3aPPTA-1tnoK01K:258-288
3bPPTA-1tnoK02K:258-288
3cPPTA-1tnoK03K:258-288
3dPPTA-1tnoK04K:258-288
3ePPTA-1tnoK05K:258-288
3fPPTA-1tnoK06K:258-288
3gPPTA-1tnoK07K:258-288
3hPPTA-1tnoK08K:258-288
3iPPTA-1tnoK09K:258-288
3jPPTA-1tnoK10K:258-288
3kPPTA-1tnoK11K:258-288
3lPPTA-1tnoK12K:258-288
3mPPTA-1tnoK13K:258-288
3nPPTA-1tnoK14K:258-288
3oPPTA-1tnoK15K:258-288
3pPPTA-1tnoK16K:258-288
3qPPTA-1tnoK17K:258-288
3rPPTA-1tnoK18K:258-288
3sPPTA-1tnoK19K:258-288
3tPPTA-1tnoK20K:258-288
3uPPTA-1tnoK21K:258-288
3vPPTA-1tnoK22K:258-288
3wPPTA-1tnoK23K:258-288
3xPPTA-1tnoK24K:258-288
3yPPTA-1tnoK25K:258-288
3zPPTA-1tnoK26K:258-288
3aaPPTA-1tnoK27K:258-288
3abPPTA-1tnoK28K:258-288
3acPPTA-1tnoK29K:258-288
3adPPTA-1tnoK30K:258-288

(-) Gene Ontology  (27, 42)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G,I,K   (FNTA_RAT | Q04631)
molecular function
    GO:0004662    CAAX-protein geranylgeranyltransferase activity    Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0019840    isoprenoid binding    Interacting selectively and non-covalently with any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0004659    prenyltransferase activity    Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004660    protein farnesyltransferase activity    Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate.
    GO:0004661    protein geranylgeranyltransferase activity    Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
    GO:0008318    protein prenyltransferase activity    Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0051771    negative regulation of nitric-oxide synthase biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
    GO:0045787    positive regulation of cell cycle    Any process that activates or increases the rate or extent of progression through the cell cycle.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0051770    positive regulation of nitric-oxide synthase biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric oxide synthase enzyme.
    GO:0018343    protein farnesylation    The covalent attachment of a farnesyl group to a protein.
    GO:0018344    protein geranylgeranylation    The covalent attachment of a geranylgeranyl group to a protein.
    GO:0018342    protein prenylation    The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0010035    response to inorganic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
    GO:0014070    response to organic cyclic compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.
cellular component
    GO:0005953    CAAX-protein geranylgeranyltransferase complex    A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005965    protein farnesyltransferase complex    A protein complex that possesses protein farnesyltransferase activity.

Chain B,D,F,H,J,L   (PGTB1_RAT | P53610)
molecular function
    GO:0004662    CAAX-protein geranylgeranyltransferase activity    Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0019840    isoprenoid binding    Interacting selectively and non-covalently with any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0004659    prenyltransferase activity    Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004661    protein geranylgeranyltransferase activity    Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051771    negative regulation of nitric-oxide synthase biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of a nitric-oxide synthase enzyme.
    GO:0045787    positive regulation of cell cycle    Any process that activates or increases the rate or extent of progression through the cell cycle.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0018344    protein geranylgeranylation    The covalent attachment of a geranylgeranyl group to a protein.
    GO:0034097    response to cytokine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
cellular component
    GO:0005953    CAAX-protein geranylgeranyltransferase complex    A heterodimeric enzyme, composed of an alpha and a beta subunit. Participates in the post-translational C-terminal modification of several small GTPases, allowing their targeting to the membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FNTA_RAT | Q046311d8d 1d8e 1fpp 1ft1 1ft2 1fti 1hz7 1jcr 1jcs 1kzo 1kzp 1kzr 1n4p 1n4q 1n4r 1n4s 1n94 1n95 1n9a 1ni1 1nl4 1o1r 1o1s 1o1t 1o5m 1qbq 1qe2 1s64 1sa5 1tn7 1tn8 1tnb 1tnu 1tny 1tnz 1x81 2bed 2fti 2r2l 2zir 2zis 3dpy 3e30 3e32 3e33 3e34 3eu5 3euv 3fti 3ksl 3ksq 3pz4 4gtm 4gto 4gtp 4gtq 4gtr
        PGTB1_RAT | P536101n4p 1n4q 1n4r 1n4s 1s64 1tnb 1tnu 1tny 1tnz

(-) Related Entries Specified in the PDB File

1d8d CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION
1n4p PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH GERANYLGERANYL DIPHOSPHATE
1n4q PROTEIN GERANYLGERANYLTRANSFERASE TYPE-I COMPLEXED WITH A GGPP ANALOG AND A KKKSKTKCVIL PEPTIDE
1qbq STRUCTURE OF RAT FARNESYL PROTEIN TRANSFERASE COMPLEXED WITH A CVIM PEPTIDE AND -HYDROXYFARNESYLPHOSPHONIC ACID
1tn6
1tn7
1tn8
1tnb
1tnu
1tny
1tnz