1LV5 | PD0317 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP

Authors :   S. J. Johnson, J. S. Taylor, L. S. Beese

Date :   24 May 02 (Deposition) - 25 Mar 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D  (1x)
Biol. Unit 2: B,E,F  (1x)

Keywords :   Dna Polymerase I, Dna Replication, Klenow Fragment, Protein- Dna-Dntp Complex, Closed Conformation, Transferase/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. J. Johnson, J. S. Taylor, L. S. Beese
Processive Dna Synthesis Observed In A Polymerase Crystal Suggests A Mechanism For The Prevention Of Frameshift Mutations
Proc. Natl. Acad. Sci. Usa V. 100 3895 2003
PubMed-ID: 12649320 | Reference-DOI: 10.1073/PNAS.0630532100
(for further references see the PDB file header)

*Molecule 1 - 5'-D(GPGPAPTPCPAPGPCPGPA)-3'*
	Chains	:	C, E
	Engineered	:	YES
	Other Details	:	PRIMER STRAND
	Synthetic	:	YES

*Molecule 2 - 5'-D(APCPGPTPCPGPCPTPGPAPTPCPCPG)- 3'*
	Chains	:	D, F
	Engineered	:	YES
	Other Details	:	TEMPLATE STRAND
	Synthetic	:	YES

Molecule 3 - DNA POLYMERASE I
	Chains	:	A, B
	EC Number	:	2.7.7.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-30A(+)
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT)
	Mutation	:	YES
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Other Details	:	THIS PROTEIN WAS ISOLATED FROM AN AS YET UNNAMED NOVEL STRAIN OF BACILLUS STEAROTHERMOPHILUS (SEE REF 2).

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A		C	D
Biological Unit 2 (1x)	:		B			E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 7)

No.	Name	Count	Type	Full Name
1	DCP	2	Ligand/Ion	2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2	MG	1	Ligand/Ion	MAGNESIUM ION
3	MN	2	Ligand/Ion	MANGANESE (II) ION
4	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	DCP	1	Ligand/Ion	2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MN	-1	Ligand/Ion	MANGANESE (II) ION
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	DCP	1	Ligand/Ion	2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MN	-1	Ligand/Ion	MANGANESE (II) ION
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	DCP A:201 , MG A:205 , ASP A:653 , TYR A:654 , ASP A:830	BINDING SITE FOR RESIDUE MN A 1
2	AC2	SOFTWARE	DCP B:202 , ASP B:653 , TYR B:654 , ASP B:830	BINDING SITE FOR RESIDUE MN B 2
3	AC3	SOFTWARE	MN A:1 , DCP A:201 , ASP A:653 , ASP A:830 , DA C:29	BINDING SITE FOR RESIDUE MG A 205
4	AC4	SOFTWARE	HOH A:154 , ARG A:472 , GLU A:476	BINDING SITE FOR RESIDUE SO4 A 203
5	AC5	SOFTWARE	GLU B:476	BINDING SITE FOR RESIDUE SO4 B 204
6	AC6	SOFTWARE	MN A:1 , HOH A:98 , HOH A:123 , MG A:205 , ARG A:615 , ASP A:653 , TYR A:654 , GLN A:656 , ILE A:657 , GLU A:658 , HIS A:682 , ARG A:702 , LYS A:706 , PHE A:710 , TYR A:714 , ASP A:830 , HOH C:18 , DA C:29 , DG D:3	BINDING SITE FOR RESIDUE DCP A 201
7	AC7	SOFTWARE	MN B:2 , HOH B:96 , ARG B:615 , ASP B:653 , TYR B:654 , SER B:655 , GLN B:656 , ILE B:657 , GLU B:658 , HIS B:682 , ARG B:702 , LYS B:706 , PHE B:710 , ASP B:830 , DA E:29 , DG F:3 , DT F:4	BINDING SITE FOR RESIDUE DCP B 202

(no "SS Bond" information available for 1LV5)

Asymmetric Unit

No.	Residues
1	Glu A:620	-	Pro A:621
2	Glu B:620	-	Pro B:621

Asymmetric Unit (48, 96)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_DPO1_GEOSE_001 *	G	298	K	DPO1_GEOSE	---	---	A/B	K	298	K
02	UniProt	VAR_DPO1_GEOSE_002 *	D	300	A	DPO1_GEOSE	---	---	A/B	A	300	A
03	UniProt	VAR_DPO1_GEOSE_003 *	S	306	R	DPO1_GEOSE	---	---	A/B	R	306	R
04	UniProt	VAR_DPO1_GEOSE_004 *	D	309	E	DPO1_GEOSE	---	---	A/B	E	309	E
05	UniProt	VAR_DPO1_GEOSE_005 *	V	320	L	DPO1_GEOSE	---	---	A/B	V	320	L
06	UniProt	VAR_DPO1_GEOSE_006 *	H	329	D	DPO1_GEOSE	---	---	A/B	A	329	D
07	UniProt	VAR_DPO1_GEOSE_007 *	R	341	H	DPO1_GEOSE	---	---	A/B	H	341	H
08	UniProt	VAR_DPO1_GEOSE_008 *	K	356	Q	DPO1_GEOSE	---	---	A/B	Q	356	Q
09	UniProt	VAR_DPO1_GEOSE_009 *	L	358	V	DPO1_GEOSE	---	---	A/B	V	358	V
10	UniProt	VAR_DPO1_GEOSE_010 *	T	369	S	DPO1_GEOSE	---	---	A/B	S	369	S
11	UniProt	VAR_DPO1_GEOSE_011 *	R	388	C	DPO1_GEOSE	---	---	A/B	C	388	C
12	UniProt	VAR_DPO1_GEOSE_012 *	V	391	S	DPO1_GEOSE	---	---	A/B	S	391	S
13	UniProt	VAR_DPO1_GEOSE_013 *	A	411	R	DPO1_GEOSE	---	---	A/B	A	411	R
14	UniProt	VAR_DPO1_GEOSE_014 *	V	413	A	DPO1_GEOSE	---	---	A/B	A	413	A
15	UniProt	VAR_DPO1_GEOSE_015 *	H	417	K	DPO1_GEOSE	---	---	A/B	K	417	K
16	UniProt	VAR_DPO1_GEOSE_016 *	S	424	P	DPO1_GEOSE	---	---	A/B	P	424	P
17	UniProt	VAR_DPO1_GEOSE_017 *	T	436	A	DPO1_GEOSE	---	---	A/B	A	436	A
18	UniProt	VAR_DPO1_GEOSE_018 *	T	442	V	DPO1_GEOSE	---	---	A/B	V	442	V
19	UniProt	VAR_DPO1_GEOSE_019 *	A	456	E	DPO1_GEOSE	---	---	A/B	E	456	E
20	UniProt	VAR_DPO1_GEOSE_020 *	E	459	R	DPO1_GEOSE	---	---	A/B	R	459	R
21	UniProt	VAR_DPO1_GEOSE_021 *	T	475	V	DPO1_GEOSE	---	---	A/B	V	475	V
22	UniProt	VAR_DPO1_GEOSE_022 *	N	487	E	DPO1_GEOSE	---	---	A/B	E	487	E
23	UniProt	VAR_DPO1_GEOSE_023 *	T	491	A	DPO1_GEOSE	---	---	A/B	A	491	A
24	UniProt	VAR_DPO1_GEOSE_024 *	A	505	K	DPO1_GEOSE	---	---	A/B	K	505	K
25	UniProt	VAR_DPO1_GEOSE_025 *	T	508	R	DPO1_GEOSE	---	---	A/B	A	508	R
26	UniProt	VAR_DPO1_GEOSE_026 *	Q	510	K	DPO1_GEOSE	---	---	A/B	Q	510	K
27	UniProt	VAR_DPO1_GEOSE_027 *	R	516	Q	DPO1_GEOSE	---	---	A/B	Q	516	Q
28	UniProt	VAR_DPO1_GEOSE_028 *	D	540	E	DPO1_GEOSE	---	---	A/B	E	540	E
29	UniProt	VAR_DPO1_GEOSE_029 *	H	567	Y	DPO1_GEOSE	---	---	A/B	Y	567	Y
30	UniProt	VAR_DPO1_GEOSE_030 *	H	573	N	DPO1_GEOSE	---	---	A/B	N	573	N
31	UniProt	VAR_DPO1_GEOSE_031 *	H	596	R	DPO1_GEOSE	---	---	A/B	R	596	R
32	UniProt	VAR_DPO1_GEOSE_032 *	V	598	D	DPO1_GEOSE	---	---	A/B	D	598	D
33	UniProt	VAR_DPO1_GEOSE_033 *	G	600	K	DPO1_GEOSE	---	---	A/B	K	600	K
34	UniProt	VAR_DPO1_GEOSE_034 *	M	605	I	DPO1_GEOSE	---	---	A/B	I	605	I
35	UniProt	VAR_DPO1_GEOSE_035 *	V	619	T	DPO1_GEOSE	---	---	A/B	T	619	T
36	UniProt	VAR_DPO1_GEOSE_036 *	P	645	S	DPO1_GEOSE	---	---	A/B	S	645	S
37	UniProt	VAR_DPO1_GEOSE_037 *	I	672	M	DPO1_GEOSE	---	---	A/B	M	672	M
38	UniProt	VAR_DPO1_GEOSE_038 *	G	678	D	DPO1_GEOSE	---	---	A/B	D	678	D
39	UniProt	VAR_DPO1_GEOSE_039 *	H	691	Q	DPO1_GEOSE	---	---	A/B	Q	691	Q
40	UniProt	VAR_DPO1_GEOSE_040 *	A	699	P	DPO1_GEOSE	---	---	A/B	P	699	P
41	UniProt	VAR_DPO1_GEOSE_041 *	T	728	S	DPO1_GEOSE	---	---	A/B	S	728	S
42	UniProt	VAR_DPO1_GEOSE_042 *	A	741	E	DPO1_GEOSE	---	---	A/B	E	741	E
43	UniProt	VAR_DPO1_GEOSE_043 *	Q	748	R	DPO1_GEOSE	---	---	A/B	R	748	R
44	UniProt	VAR_DPO1_GEOSE_044 *	D	751	E	DPO1_GEOSE	---	---	A/B	E	751	E
45	UniProt	VAR_DPO1_GEOSE_045 *	T	790	M	DPO1_GEOSE	---	---	A/B	M	790	M
46	UniProt	VAR_DPO1_GEOSE_046 *	R	816	K	DPO1_GEOSE	---	---	A/B	K	816	K
47	UniProt	VAR_DPO1_GEOSE_047 *	I	841	M	DPO1_GEOSE	---	---	A/B	M	841	M
48	UniProt	VAR_DPO1_GEOSE_048 *	P	870	S	DPO1_GEOSE	---	---	A/B	S	870	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (48, 48)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_DPO1_GEOSE_001 *	G	298	K	DPO1_GEOSE	---	---	A	K	298	K
02	UniProt	VAR_DPO1_GEOSE_002 *	D	300	A	DPO1_GEOSE	---	---	A	A	300	A
03	UniProt	VAR_DPO1_GEOSE_003 *	S	306	R	DPO1_GEOSE	---	---	A	R	306	R
04	UniProt	VAR_DPO1_GEOSE_004 *	D	309	E	DPO1_GEOSE	---	---	A	E	309	E
05	UniProt	VAR_DPO1_GEOSE_005 *	V	320	L	DPO1_GEOSE	---	---	A	V	320	L
06	UniProt	VAR_DPO1_GEOSE_006 *	H	329	D	DPO1_GEOSE	---	---	A	A	329	D
07	UniProt	VAR_DPO1_GEOSE_007 *	R	341	H	DPO1_GEOSE	---	---	A	H	341	H
08	UniProt	VAR_DPO1_GEOSE_008 *	K	356	Q	DPO1_GEOSE	---	---	A	Q	356	Q
09	UniProt	VAR_DPO1_GEOSE_009 *	L	358	V	DPO1_GEOSE	---	---	A	V	358	V
10	UniProt	VAR_DPO1_GEOSE_010 *	T	369	S	DPO1_GEOSE	---	---	A	S	369	S
11	UniProt	VAR_DPO1_GEOSE_011 *	R	388	C	DPO1_GEOSE	---	---	A	C	388	C
12	UniProt	VAR_DPO1_GEOSE_012 *	V	391	S	DPO1_GEOSE	---	---	A	S	391	S
13	UniProt	VAR_DPO1_GEOSE_013 *	A	411	R	DPO1_GEOSE	---	---	A	A	411	R
14	UniProt	VAR_DPO1_GEOSE_014 *	V	413	A	DPO1_GEOSE	---	---	A	A	413	A
15	UniProt	VAR_DPO1_GEOSE_015 *	H	417	K	DPO1_GEOSE	---	---	A	K	417	K
16	UniProt	VAR_DPO1_GEOSE_016 *	S	424	P	DPO1_GEOSE	---	---	A	P	424	P
17	UniProt	VAR_DPO1_GEOSE_017 *	T	436	A	DPO1_GEOSE	---	---	A	A	436	A
18	UniProt	VAR_DPO1_GEOSE_018 *	T	442	V	DPO1_GEOSE	---	---	A	V	442	V
19	UniProt	VAR_DPO1_GEOSE_019 *	A	456	E	DPO1_GEOSE	---	---	A	E	456	E
20	UniProt	VAR_DPO1_GEOSE_020 *	E	459	R	DPO1_GEOSE	---	---	A	R	459	R
21	UniProt	VAR_DPO1_GEOSE_021 *	T	475	V	DPO1_GEOSE	---	---	A	V	475	V
22	UniProt	VAR_DPO1_GEOSE_022 *	N	487	E	DPO1_GEOSE	---	---	A	E	487	E
23	UniProt	VAR_DPO1_GEOSE_023 *	T	491	A	DPO1_GEOSE	---	---	A	A	491	A
24	UniProt	VAR_DPO1_GEOSE_024 *	A	505	K	DPO1_GEOSE	---	---	A	K	505	K
25	UniProt	VAR_DPO1_GEOSE_025 *	T	508	R	DPO1_GEOSE	---	---	A	A	508	R
26	UniProt	VAR_DPO1_GEOSE_026 *	Q	510	K	DPO1_GEOSE	---	---	A	Q	510	K
27	UniProt	VAR_DPO1_GEOSE_027 *	R	516	Q	DPO1_GEOSE	---	---	A	Q	516	Q
28	UniProt	VAR_DPO1_GEOSE_028 *	D	540	E	DPO1_GEOSE	---	---	A	E	540	E
29	UniProt	VAR_DPO1_GEOSE_029 *	H	567	Y	DPO1_GEOSE	---	---	A	Y	567	Y
30	UniProt	VAR_DPO1_GEOSE_030 *	H	573	N	DPO1_GEOSE	---	---	A	N	573	N
31	UniProt	VAR_DPO1_GEOSE_031 *	H	596	R	DPO1_GEOSE	---	---	A	R	596	R
32	UniProt	VAR_DPO1_GEOSE_032 *	V	598	D	DPO1_GEOSE	---	---	A	D	598	D
33	UniProt	VAR_DPO1_GEOSE_033 *	G	600	K	DPO1_GEOSE	---	---	A	K	600	K
34	UniProt	VAR_DPO1_GEOSE_034 *	M	605	I	DPO1_GEOSE	---	---	A	I	605	I
35	UniProt	VAR_DPO1_GEOSE_035 *	V	619	T	DPO1_GEOSE	---	---	A	T	619	T
36	UniProt	VAR_DPO1_GEOSE_036 *	P	645	S	DPO1_GEOSE	---	---	A	S	645	S
37	UniProt	VAR_DPO1_GEOSE_037 *	I	672	M	DPO1_GEOSE	---	---	A	M	672	M
38	UniProt	VAR_DPO1_GEOSE_038 *	G	678	D	DPO1_GEOSE	---	---	A	D	678	D
39	UniProt	VAR_DPO1_GEOSE_039 *	H	691	Q	DPO1_GEOSE	---	---	A	Q	691	Q
40	UniProt	VAR_DPO1_GEOSE_040 *	A	699	P	DPO1_GEOSE	---	---	A	P	699	P
41	UniProt	VAR_DPO1_GEOSE_041 *	T	728	S	DPO1_GEOSE	---	---	A	S	728	S
42	UniProt	VAR_DPO1_GEOSE_042 *	A	741	E	DPO1_GEOSE	---	---	A	E	741	E
43	UniProt	VAR_DPO1_GEOSE_043 *	Q	748	R	DPO1_GEOSE	---	---	A	R	748	R
44	UniProt	VAR_DPO1_GEOSE_044 *	D	751	E	DPO1_GEOSE	---	---	A	E	751	E
45	UniProt	VAR_DPO1_GEOSE_045 *	T	790	M	DPO1_GEOSE	---	---	A	M	790	M
46	UniProt	VAR_DPO1_GEOSE_046 *	R	816	K	DPO1_GEOSE	---	---	A	K	816	K
47	UniProt	VAR_DPO1_GEOSE_047 *	I	841	M	DPO1_GEOSE	---	---	A	M	841	M
48	UniProt	VAR_DPO1_GEOSE_048 *	P	870	S	DPO1_GEOSE	---	---	A	S	870	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (48, 48)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_DPO1_GEOSE_001 *	G	298	K	DPO1_GEOSE	---	---	B	K	298	K
02	UniProt	VAR_DPO1_GEOSE_002 *	D	300	A	DPO1_GEOSE	---	---	B	A	300	A
03	UniProt	VAR_DPO1_GEOSE_003 *	S	306	R	DPO1_GEOSE	---	---	B	R	306	R
04	UniProt	VAR_DPO1_GEOSE_004 *	D	309	E	DPO1_GEOSE	---	---	B	E	309	E
05	UniProt	VAR_DPO1_GEOSE_005 *	V	320	L	DPO1_GEOSE	---	---	B	V	320	L
06	UniProt	VAR_DPO1_GEOSE_006 *	H	329	D	DPO1_GEOSE	---	---	B	A	329	D
07	UniProt	VAR_DPO1_GEOSE_007 *	R	341	H	DPO1_GEOSE	---	---	B	H	341	H
08	UniProt	VAR_DPO1_GEOSE_008 *	K	356	Q	DPO1_GEOSE	---	---	B	Q	356	Q
09	UniProt	VAR_DPO1_GEOSE_009 *	L	358	V	DPO1_GEOSE	---	---	B	V	358	V
10	UniProt	VAR_DPO1_GEOSE_010 *	T	369	S	DPO1_GEOSE	---	---	B	S	369	S
11	UniProt	VAR_DPO1_GEOSE_011 *	R	388	C	DPO1_GEOSE	---	---	B	C	388	C
12	UniProt	VAR_DPO1_GEOSE_012 *	V	391	S	DPO1_GEOSE	---	---	B	S	391	S
13	UniProt	VAR_DPO1_GEOSE_013 *	A	411	R	DPO1_GEOSE	---	---	B	A	411	R
14	UniProt	VAR_DPO1_GEOSE_014 *	V	413	A	DPO1_GEOSE	---	---	B	A	413	A
15	UniProt	VAR_DPO1_GEOSE_015 *	H	417	K	DPO1_GEOSE	---	---	B	K	417	K
16	UniProt	VAR_DPO1_GEOSE_016 *	S	424	P	DPO1_GEOSE	---	---	B	P	424	P
17	UniProt	VAR_DPO1_GEOSE_017 *	T	436	A	DPO1_GEOSE	---	---	B	A	436	A
18	UniProt	VAR_DPO1_GEOSE_018 *	T	442	V	DPO1_GEOSE	---	---	B	V	442	V
19	UniProt	VAR_DPO1_GEOSE_019 *	A	456	E	DPO1_GEOSE	---	---	B	E	456	E
20	UniProt	VAR_DPO1_GEOSE_020 *	E	459	R	DPO1_GEOSE	---	---	B	R	459	R
21	UniProt	VAR_DPO1_GEOSE_021 *	T	475	V	DPO1_GEOSE	---	---	B	V	475	V
22	UniProt	VAR_DPO1_GEOSE_022 *	N	487	E	DPO1_GEOSE	---	---	B	E	487	E
23	UniProt	VAR_DPO1_GEOSE_023 *	T	491	A	DPO1_GEOSE	---	---	B	A	491	A
24	UniProt	VAR_DPO1_GEOSE_024 *	A	505	K	DPO1_GEOSE	---	---	B	K	505	K
25	UniProt	VAR_DPO1_GEOSE_025 *	T	508	R	DPO1_GEOSE	---	---	B	A	508	R
26	UniProt	VAR_DPO1_GEOSE_026 *	Q	510	K	DPO1_GEOSE	---	---	B	Q	510	K
27	UniProt	VAR_DPO1_GEOSE_027 *	R	516	Q	DPO1_GEOSE	---	---	B	Q	516	Q
28	UniProt	VAR_DPO1_GEOSE_028 *	D	540	E	DPO1_GEOSE	---	---	B	E	540	E
29	UniProt	VAR_DPO1_GEOSE_029 *	H	567	Y	DPO1_GEOSE	---	---	B	Y	567	Y
30	UniProt	VAR_DPO1_GEOSE_030 *	H	573	N	DPO1_GEOSE	---	---	B	N	573	N
31	UniProt	VAR_DPO1_GEOSE_031 *	H	596	R	DPO1_GEOSE	---	---	B	R	596	R
32	UniProt	VAR_DPO1_GEOSE_032 *	V	598	D	DPO1_GEOSE	---	---	B	D	598	D
33	UniProt	VAR_DPO1_GEOSE_033 *	G	600	K	DPO1_GEOSE	---	---	B	K	600	K
34	UniProt	VAR_DPO1_GEOSE_034 *	M	605	I	DPO1_GEOSE	---	---	B	I	605	I
35	UniProt	VAR_DPO1_GEOSE_035 *	V	619	T	DPO1_GEOSE	---	---	B	T	619	T
36	UniProt	VAR_DPO1_GEOSE_036 *	P	645	S	DPO1_GEOSE	---	---	B	S	645	S
37	UniProt	VAR_DPO1_GEOSE_037 *	I	672	M	DPO1_GEOSE	---	---	B	M	672	M
38	UniProt	VAR_DPO1_GEOSE_038 *	G	678	D	DPO1_GEOSE	---	---	B	D	678	D
39	UniProt	VAR_DPO1_GEOSE_039 *	H	691	Q	DPO1_GEOSE	---	---	B	Q	691	Q
40	UniProt	VAR_DPO1_GEOSE_040 *	A	699	P	DPO1_GEOSE	---	---	B	P	699	P
41	UniProt	VAR_DPO1_GEOSE_041 *	T	728	S	DPO1_GEOSE	---	---	B	S	728	S
42	UniProt	VAR_DPO1_GEOSE_042 *	A	741	E	DPO1_GEOSE	---	---	B	E	741	E
43	UniProt	VAR_DPO1_GEOSE_043 *	Q	748	R	DPO1_GEOSE	---	---	B	R	748	R
44	UniProt	VAR_DPO1_GEOSE_044 *	D	751	E	DPO1_GEOSE	---	---	B	E	751	E
45	UniProt	VAR_DPO1_GEOSE_045 *	T	790	M	DPO1_GEOSE	---	---	B	M	790	M
46	UniProt	VAR_DPO1_GEOSE_046 *	R	816	K	DPO1_GEOSE	---	---	B	K	816	K
47	UniProt	VAR_DPO1_GEOSE_047 *	I	841	M	DPO1_GEOSE	---	---	B	M	841	M
48	UniProt	VAR_DPO1_GEOSE_048 *	P	870	S	DPO1_GEOSE	---	---	B	S	870	S
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DNA_POLYMERASE_A	PS00447	DNA polymerase family A signature.	DPO1_GEOSE	702-721	2	A:702-721 B:702-721

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DNA_POLYMERASE_A	PS00447	DNA polymerase family A signature.	DPO1_GEOSE	702-721	1	A:702-721 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DNA_POLYMERASE_A	PS00447	DNA polymerase family A signature.	DPO1_GEOSE	702-721	1	- B:702-721

(no "Exon" information available for 1LV5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:580
 aligned with DPO1_GEOSE | P52026 from UniProtKB/Swiss-Prot  Length:876

    Alignment length:580
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876
           DPO1_GEOSE   297 AGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETALADPKFLAWLGDETKKKTMFDSKRAAVALKWKGIELRGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 876
               SCOP domains d1lv5a1 A:297-468 Exonuclease domain of prokaryotic DNA polymerase                                                                                                          d1lv5a2 A:469-876 DNA polymerase I (Klenow fragment)                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lv5A01 A:297-490  [code=3.30.420.10, no name defined]                                                                                                                                            1lv5A02 A:491-605 Taq DNA Polymerase; Chain T, domain 4                                                            1lv5A03 A:606-656,A:801-875                        1lv5A04 A:657-800 5' to 3' exonuclease, C-terminal subdomain                                                                                    1lv5A03 A:606-656,A:801-875  [code=3.30.70.370, no name defined]           - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhh..eeeeeee............eeeeee..eeeeehhhhhh.hhhhhhhhhh...eeee.hhhhhhhhhhh.......eeeehhhhhhhhhhhhh..hhhhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhheeehhhhhhhhhhhhhhhhhh.hhhhhhhhh......hhhhhhhh...................hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.......ee..eee.........eee..........hhhhhhhhh.ee.....eeeeee...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee.....eee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeeee..hhhhhhhhhhhhhhhh..........eeee....... Sec.struct. author
                 SAPs(SNPs) -K-A-----R--E----------L--------D-----------H--------------Q-V----------S------------------C--S-------------------R-A---K------P-----------A-----V-------------E--R---------------V-----------E---A-------------K--R-K-----Q-----------------------E--------------------------Y-----N----------------------R-D-K----I-------------T-------------------------S--------------------------M-----D------------Q-------P----------------------------S------------E------R--E--------------------------------------M-------------------------K------------------------M----------------------------S------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_A    ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lv5 A 297 AKMAFTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 876
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876

Chain B from PDB  Type:PROTEIN  Length:580
 aligned with DPO1_GEOSE | P52026 from UniProtKB/Swiss-Prot  Length:876

    Alignment length:580
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876
           DPO1_GEOSE   297 AGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETALADPKFLAWLGDETKKKTMFDSKRAAVALKWKGIELRGVVFDLLLAAYLLDPAQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 876
               SCOP domains d1lv5b1 B:297-468 Exonuclease domain of prokaryotic DNA polymerase                                                                                                          d1lv5b2 B:469-876 DNA polymerase I (Klenow fragment)                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lv5B01 B:297-490  [code=3.30.420.10, no name defined]                                                                                                                                            1lv5B02 B:491-605 Taq DNA Polymerase; Chain T, domain 4                                                            1lv5B03 B:606-656,B:801-875                        1lv5B04 B:657-800 5' to 3' exonuclease, C-terminal subdomain                                                                                    1lv5B03 B:606-656,B:801-875  [code=3.30.70.370, no name defined]           - CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_pol_A-1lv5B01 B:495-875                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_pol_A-1lv5B02 B:495-875                                                                                                                                                                                                                                                                                                                                                                  - Pfam domains (2)
         Sec.struct. author .....ee....hhhhhh.eeeeee..............eeeee..eeeeehhhhhh.hhhhhhhhh....eeee.hhhhhhhhhhh.......eeeehhhhhhhhhhhhh..hhhhhhhh........hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhh.................hhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....ee..ee...........ee.............hhhhhhh.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee.....eee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...eeeeeee..hhhhhhhhhhhhhhh.........eeeeee.hhhhh. Sec.struct. author
                 SAPs(SNPs) -K-A-----R--E----------L--------D-----------H--------------Q-V----------S------------------C--S-------------------R-A---K------P-----------A-----V-------------E--R---------------V-----------E---A-------------K--R-K-----Q-----------------------E--------------------------Y-----N----------------------R-D-K----I-------------T-------------------------S--------------------------M-----D------------Q-------P----------------------------S------------E------R--E--------------------------------------M-------------------------K------------------------M----------------------------S------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_A    ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lv5 B 297 AKMAFTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 876
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876

Chain C from PDB  Type:DNA  Length:10
                                          
                 1lv5 C  20 GGATCAGCGA  29
                                    29

Chain D from PDB  Type:DNA  Length:14
                                              
                 1lv5 D   1 ACGTCGCTGATCCG  14
                                    10

Chain E from PDB  Type:DNA  Length:10
                                          
                 1lv5 E  20 GGATCAGCGA  29
                                    29

Chain F from PDB  Type:DNA  Length:14
                                              
                 1lv5 F   1 ACGTCGCTGATCCG  14
                                    10

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.370, no name defined] (99)

[unclassified] (84)

1a	1lv5A03	A:606-656,A:801-875
1b	1lv5B03	B:606-656,B:801-875

Topology: Nucleotidyltransferase; domain 5 (788)

Homologous Superfamily: [code=3.30.420.10, no name defined] (372)

[unclassified] (102)

2a	1lv5A01	A:297-490
2b	1lv5B01	B:297-490

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: DNA polymerase; domain 1 (617)

Homologous Superfamily: 5' to 3' exonuclease, C-terminal subdomain (384)

[unclassified] (230)

3a	1lv5A04	A:657-800
3b	1lv5B04	B:657-800

Architecture: Up-down Bundle (3216)

Topology: Taq DNA Polymerase; Chain T, domain 4 (88)

Homologous Superfamily: Taq DNA Polymerase; Chain T, domain 4 (88)

[unclassified] (77)

4a	1lv5A02	A:491-605
4b	1lv5B02	B:491-605

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: DNA_pol_A] (69)

Family: DNA_pol_A (69)

Geobacillus stearothermophilus (Bacillus stearothermophilus) (24)

1a	DNA_pol_A-1lv5B01	B:495-875
1b	DNA_pol_A-1lv5B02	B:495-875

Asymmetric Unit(hide GO term definitions)

Chain A,B (DPO1_GEOSE | P52026)

molecular function
	GO:0008408	3'-5' exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003887	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004527	exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0071897	DNA biosynthetic process	The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
	GO:0006281	DNA repair	The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0006261	DNA-dependent DNA replication	A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
	GO:0006974	cellular response to DNA damage stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
	GO:0006139	nucleobase-containing compound metabolic process	Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		DCP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:620 - Pro A:621	[ RasMol ]
		Glu B:620 - Pro B:621	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1lv5
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	DPO1_GEOSE \| P52026
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.7.7.7
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	DPO1_GEOSE \| P52026
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1l3s	1L3S IS THE WILD TYPE BACILLUS DNA POLYMERASE I BOUND TO A 9 BASE PAIR DNA DUPLEX IN THE OPEN CONFORMATION
1l3t	1L3T IS A 10 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP.
1l3u	1L3U IS AN 11 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP AND DATP.
1l3v	1L3V IS A 15 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP, DATP, DCTP, AND DGTP.
1l5u	1L5U IS A 12 BASE PAIR PROTEIN-DNA PRODUCT COMPLEX, PRODUCED BY PLACING A CRYSTAL OF THE 9 BASE PAIR COMPLEX (1L3S) IN A STABILIZATION SOLUTION CONTAINING DTTP, DATP, AND DCTP.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (48, 96)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (4, 8)

Pfam Domains (1, 2)

Gene Ontology (17, 17)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File