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Class: Multi-domain proteins (alpha and beta) (2421)
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Fold: DNA/RNA polymerases (850)
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Superfamily: DNA/RNA polymerases (850)
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Family: DNA polymerase I (233)
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Protein domain: DNA polymerase I (Klenow fragment) (82)
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Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] (44)
1L3SA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA.
1L3TA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 10 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A SINGLE DTTP RESIDUE
1L3UA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 11 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP AND A DATP RESIDUE.
1L3VA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 15 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF DTTP, DATP, DCTP, AND DGTP RESIDUES.
1L5UA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT PRODUCT COMPLEX WITH 12 BASE PAIRS OF DUPLEX DNA FOLLOWING ADDITION OF A DTTP, A DATP, AND A DCTP RESIDUE.
1LV5A:469-876; B:469-876CRYSTAL STRUCTURE OF THE CLOSED CONFORMATION OF BACILLUS DNA POLYMERASE I FRAGMENT BOUND TO DNA AND DCTP
1NJWA:469-876GUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJXA:469-876THYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJYA:469-876THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NJZA:469-876CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK0A:469-876ADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK4A:469-876GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK5A:469-876ADENINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK6A:469-876CYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK7A:469-876GUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1NK8A:469-876A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1NK9A:469-876A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.
1NKBA:469-876A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.
1NKCA:469-876A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
1NKEA:469-876A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.
1U45A:469-8768OXOGUANINE AT THE PRE-INSERTION SITE OF THE POLYMERASE ACTIVE SITE
1U47A:469-876CYTOSINE-8-OXOGUANINE BASE PAIR AT THE POLYMERASE ACTIVE SITE
1U48A:469-876EXTENSION OF A CYTOSINE-8-OXOGUANINE BASE PAIR
1U49A:469-876ADENINE-8OXOGUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE
1U4BA:469-876EXTENSION OF AN ADENINE-8OXOGUANINE MISMATCH
1UA0A:469-876AMINOFLUORENE DNA ADDUCT AT THE PRE-INSERTION SITE OF A DNA POLYMERASE
1UA1A:469-876STRUCTURE OF AMINOFLUORENE ADDUCT PAIRED OPPOSITE CYTOSINE AT THE POLYMERASE ACTIVE SITE.
1XC9A:469-876STRUCTURE OF A HIGH-FIDELITY POLYMERASE BOUND TO A BENZO[A]PYRENE ADDUCT THAT BLOCKS REPLICATION
1XWLA:469-876BACILLUS STEAROTHERMOPHILUS (NEWLY IDENTIFIED STRAIN AS YET UNNAMED) DNA POLYMERASE FRAGMENT
2BDPA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 9 BASE PAIRS OF DUPLEX DNA
2HHQA:469-876O6-METHYL-GUANINE:T PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHSA:469-876O6-METHYL:C PAIR IN THE POLYMERASE-10 BASEPAIR POSITION
2HHTA:469-876C:O6-METHYL-GUANINE PAIR IN THE POLYMERASE-2 BASEPAIR POSITION
2HHUA:469-876C:O6-METHYL-GUANINE IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
2HHVA:469-876T:O6-METHYL-GUANINE IN THE POLYMERASE-2 BASEPAIR POSITION
2HHWA:469-876; D:469-876DDTTP:O6-METHYL-GUANINE PAIR IN THE POLYMERASE ACTIVE SITE, IN THE CLOSED CONFORMATION
2HHXA:469-876O6-METHYL-GUANINE IN THE POLYMERASE TEMPLATE PREINSERTION SITE
2HVHA:469-876; D:469-876DDCTP:O6MEG PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HVIA:469-876; D:469-876DDCTP:G PAIR IN THE POLYMERASE ACTIVE SITE (0 POSITION)
2HW3A:469-876T:O6-METHYL-GUANINE PAIR IN THE POLYMERASE POSTINSERTION SITE (-1 BASEPAIR POSITION)
3BDPA:469-876DNA POLYMERASE I/DNA COMPLEX
3EYZA:469-876COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA (OPEN FORM)
3EZ5A:469-876; D:469-876COCRYSTAL STRUCTURE OF BACILLUS FRAGMENT DNA POLYMERASE I WITH DUPLEX DNA , DCTP, AND ZINC (CLOSED FORM).
4BDPA:469-876CRYSTAL STRUCTURE OF BACILLUS DNA POLYMERASE I FRAGMENT COMPLEXED TO 11 BASE PAIRS OF DUPLEX DNA AFTER ADDITION OF TWO DATP RESIDUES
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Escherichia coli [TaxId: 562] (14)
1D8YA:519-928CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA
1D9DA:519-928CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'
1D9FA:519-928CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'
1DPIA:519-928STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
1KFDA:519-928CRYSTAL STRUCTURES OF THE KLENOW FRAGMENT OF DNA POLYMERASE I COMPLEXED WITH DEOXYNUCLEOSIDE TRIPHOSPHATE AND PYROPHOSPHATE
1KFSA:519-928DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KLNA:519-928DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KRPA:519-928DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1KSPA:519-928DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7) MUTANT/DNA COMPLEX
1QSLA:519-928KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
2KFNA:519-928KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND MANGANESE
2KFZA:519-928KLENOW FRAGMENT WITH BRIDGING-SULFUR SUBSTRATE AND ZINC ONLY
2KZMA:519-928KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC AND MANGANESE
2KZZA:519-928KLENOW FRAGMENT WITH NORMAL SUBSTRATE AND ZINC ONLY
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Thermus aquaticus [TaxId: 271] (24)
1BGXT:423-832TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
1JXEA:423-832STOFFEL FRAGMENT OF TAQ DNA POLYMERASE I
1KTQA:423-832DNA POLYMERASE
1QSSA:423-831DDGTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QSYA:423-831DDATP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1QTMA:423-831DDTTP-TRAPPED CLOSED TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
1TAQA:423-832STRUCTURE OF TAQ DNA POLYMERASE
1TAUA:423-832TAQ POLYMERASE (E.C.2.7.7.7)/DNA/B-OCTYLGLUCOSIDE COMPLEX
2KTQA:423-832OPEN TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3KTQA:423-831CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
3M8RA:423-832CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-ETHYLATED DTTP
3M8SA:423-832CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'-METHYLATED DTTP
3OJUA:423-832SNAPSHOT OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS PROCESSING C5 MODIFIED THYMIDIES
3RR7A:423-832BINARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE
3RR8A:423-832TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRGA:423-832TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDGTP
3RRHA:423-832TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND A DDTTP
3RTVA:423-832CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL PRIMER/TEMPLATE DNA
3T3FA:423-832TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO AN ABASIC SITE AND DNITP
4DF4A:423-832CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH 7-(N-(10-HYDROXYDECANOYL)-AMINOPENTINYL)-7-DEAZA-2 -DATP
4DFPA:423-832CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQAUTICUS IN A TERNARY COMPLEX WITH 7-(AMINOPENTINYL)-7-DEAZA-DGTP
4DLGA:423-832TERNARY STRUCTURE OF THE LARGE FRAGMENT OF TAQ DNA POLYMERASE
4KTQA:423-832BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA
5KTQA:423-832LARGE FRAGMENT OF TAQ DNA POLYMERASE BOUND TO DCTP