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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOTOSYSTEM II
 
Authors :  N. Kamiya, J. -R. Shen
Date :  04 Oct 02  (Deposition) - 14 Jan 03  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1
Keywords :  Photosynthesis, Photosynthetic Reaction Center, Core-Antenna, Thermophilic Cyanobacterium, Membrane Protein Complex, Electron Transfer, Energy Transfer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kamiya, J. -R. Shen
Crystal Structure Of Oxygen-Evolving Photosystem Ii From Thermosynechococcus Vulcanus At 3. 7-A Resolution
Proc. Natl. Acad. Sci. Usa V. 100 98 2003
PubMed-ID: 12518057  |  Reference-DOI: 10.1073/PNAS.0135651100

(-) Compounds

Molecule 1
    Chains: A, J
    Organism Scientific: THERMOSYNECHOCOCCUS VULCANUS
    Organism Taxid: 32053
    Synonym: PHOTOSYSTEM Q(B) PROTEIN
 
Molecule 2
    Chains: B, L
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: PHOTOSYSTEM II CORE LIGHT HARVESTING PROTEIN
 
Molecule 3
    Chains: C, M
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: PHOTOSYSTEM II CP43 PROTEIN
 
Molecule 4
    Chains: D, N
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: PHOTOSYSTEM II REACTION CENTER D2 PROTEIN
 
Molecule 5
    Chains: E, P
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: CYTOCHROME B559 ALPHA SUBUNIT
 
Molecule 6
    Chains: F, Q
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: CYTOCHROME B559 BETA SUBUNIT
 
Molecule 7
    Chains: G, R
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 8
    Chains: H, S
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 9
    Chains: I, T
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 10
    Chains: K, W
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
    Synonym: PHOTOSYSTEM II REACTION CENTER PROTEIN K
 
Molecule 11
    Chains: O, Y
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 12
    Chains: U, Z
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1
 
Molecule 13
    Chains: V, 0
    Organism Scientific: THERMOSYNECHOCOCCUS VULCANUS
    Organism Taxid: 32053
    Synonym: CYTOCHROME C-550
 
Molecule 14
    Chains: X, 1
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ01

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 1652)

Asymmetric/Biological Unit (8, 1652)
No.NameCountTypeFull Name
1BCR2Ligand/IonBETA-CAROTENE
2CLA72Ligand/IonCHLOROPHYLL A
3FE2Ligand/IonFE (III) ION
4HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
5MN8Ligand/IonMANGANESE (II) ION
6PHO4Ligand/IonPHEOPHYTIN A
7PLA2Ligand/Ion2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID
8UNK1558Mod. Amino Acid

(-) Sites  (88, 88)

Asymmetric Unit (88, 88)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:344 , MN A:362 , MN A:364BINDING SITE FOR RESIDUE MN A 361
02AC2SOFTWAREGLU A:333 , MN A:361 , MN A:363 , MN A:364BINDING SITE FOR RESIDUE MN A 362
03AC3SOFTWAREASP A:170 , MN A:362BINDING SITE FOR RESIDUE MN A 363
04AC4SOFTWAREGLU A:333 , ALA A:344 , MN A:361 , MN A:362BINDING SITE FOR RESIDUE MN A 364
05AC5SOFTWAREHIS D:214BINDING SITE FOR RESIDUE FE D 353
06AC6SOFTWAREALA J:344 , MN J:362 , MN J:364BINDING SITE FOR RESIDUE MN J 361
07AC7SOFTWAREGLU J:333 , MN J:361 , MN J:363 , MN J:364BINDING SITE FOR RESIDUE MN J 362
08AC8SOFTWAREASP J:170 , MN J:362BINDING SITE FOR RESIDUE MN J 363
09AC9SOFTWAREGLU J:189 , ALA J:344 , MN J:361 , MN J:362BINDING SITE FOR RESIDUE MN J 364
10BC1SOFTWAREHIS N:214BINDING SITE FOR RESIDUE FE N 353
11BC2SOFTWAREPHE A:182 , MET A:183 , PHE A:186 , CLA D:354BINDING SITE FOR RESIDUE CLA A 365
12BC3SOFTWARECLA A:365 , CLA A:366 , PHE D:184 , PHE D:188 , GLY D:200 , VAL D:201BINDING SITE FOR RESIDUE CLA D 354
13BC4SOFTWAREPHE A:158 , VAL D:201 , CLA D:354 , PHO D:356BINDING SITE FOR RESIDUE CLA A 366
14BC5SOFTWAREVAL A:202 , PHO A:367 , PHE D:173BINDING SITE FOR RESIDUE CLA D 355
15BC6SOFTWARETYR A:147 , CLA A:366 , ALA D:208 , LEU D:209 , ALA D:212BINDING SITE FOR RESIDUE PHO D 356
16BC7SOFTWARELEU A:210 , ILE D:144 , ALA D:145 , ALA D:148 , CLA D:355BINDING SITE FOR RESIDUE PHO A 367
17BC8SOFTWAREPRO A:39 , HIS A:92 , TYR A:94 , PRO A:95 , LEU A:114BINDING SITE FOR RESIDUE CLA A 368
18BC9SOFTWAREPHE D:113 , UNK H:17BINDING SITE FOR RESIDUE CLA D 357
19CC1SOFTWAREGLY C:247 , GLY C:248 , TRP C:266 , CLA C:1089BINDING SITE FOR RESIDUE CLA C 1078
20CC2SOFTWARETRP C:425 , LEU C:426 , SER C:429 , CLA C:1080 , ASP K:14BINDING SITE FOR RESIDUE CLA C 1079
21CC3SOFTWAREHIS C:56 , ILE C:60 , CLA C:1079 , CLA C:1082 , CLA C:1087 , PRO K:17 , PRO K:20 , VAL K:21BINDING SITE FOR RESIDUE CLA C 1080
22CC4SOFTWARESER A:124 , CLA A:369 , PHE C:264 , TYR C:274BINDING SITE FOR RESIDUE CLA C 1081
23CC5SOFTWAREALA C:52 , HIS C:56 , GLY C:268 , TYR C:271 , LEU C:272 , SER C:275 , CLA C:1080 , CLA C:1089BINDING SITE FOR RESIDUE CLA C 1082
24CC6SOFTWAREALA C:172 , HIS C:237BINDING SITE FOR RESIDUE CLA C 1083
25CC7SOFTWAREILE C:87BINDING SITE FOR RESIDUE CLA C 1084
26CC8SOFTWAREMET C:282 , GLY C:283 , ALA C:286BINDING SITE FOR RESIDUE CLA C 1085
27CC9SOFTWARELEU C:49 , LEU C:50 , HIS C:53 , PHE C:163 , HIS C:164 , VAL C:167 , CLA C:1088BINDING SITE FOR RESIDUE CLA C 1086
28DC1SOFTWAREPHE C:436 , PHE C:437 , GLY C:440 , CLA C:1080BINDING SITE FOR RESIDUE CLA C 1087
29DC2SOFTWAREGLY C:128 , GLY C:129 , TYR C:131 , CLA C:1086BINDING SITE FOR RESIDUE CLA C 1088
30DC3SOFTWARECLA C:1081BINDING SITE FOR RESIDUE CLA A 369
31DC4SOFTWAREGLY C:162 , TRP C:266 , TYR C:271 , TYR C:274 , SER C:275 , ALA C:278 , LEU C:279 , CLA C:1078 , CLA C:1082BINDING SITE FOR RESIDUE CLA C 1089
32DC5SOFTWAREALA B:212 , CLA B:1120BINDING SITE FOR RESIDUE CLA B 1107
33DC6SOFTWAREVAL B:30 , CLA B:1109 , CLA B:1112 , CLA B:1116 , CLA B:1119BINDING SITE FOR RESIDUE CLA B 1108
34DC7SOFTWAREALA B:22 , HIS B:26 , LEU B:238 , SER B:241 , CLA B:1108 , CLA B:1120BINDING SITE FOR RESIDUE CLA B 1109
35DC8SOFTWAREMET B:60 , TRP B:450 , UNK B:1050BINDING SITE FOR RESIDUE CLA B 1110
36DC9SOFTWAREARG B:68 , LEU B:69 , GLY B:152 , ALA B:155 , CLA B:1113 , CLA B:1114BINDING SITE FOR RESIDUE CLA B 1111
37EC1SOFTWAREALA B:248 , CLA B:1108BINDING SITE FOR RESIDUE CLA B 1112
38EC2SOFTWAREALA B:146 , LEU B:149 , CYS B:150 , TYR B:193 , HIS B:201 , CLA B:1111BINDING SITE FOR RESIDUE CLA B 1113
39EC3SOFTWAREALA B:31 , PHE B:61 , PRO B:64 , PHE B:65 , CLA B:1111BINDING SITE FOR RESIDUE CLA B 1114
40EC4SOFTWAREHIS B:9 , CLA B:1108BINDING SITE FOR RESIDUE CLA B 1116
41EC5SOFTWAREVAL B:198 , ALA B:200 , ALA B:204BINDING SITE FOR RESIDUE CLA B 1117
42EC6SOFTWARELEU B:19 , ILE B:20 , HIS B:23 , MET B:138 , ILE B:141 , LEU B:145BINDING SITE FOR RESIDUE CLA B 1118
43EC7SOFTWAREHIS B:9 , THR B:10 , PHE B:464 , GLY B:465 , HIS B:466 , TRP B:468 , CLA B:1108BINDING SITE FOR RESIDUE CLA B 1119
44EC8SOFTWAREPRO B:136 , PHE B:139 , SER B:240 , ALA B:244 , CLA B:1107 , CLA B:1109BINDING SITE FOR RESIDUE CLA B 1120
45EC9SOFTWAREALA B:110BINDING SITE FOR RESIDUE CLA B 1121
46FC1SOFTWAREILE E:26BINDING SITE FOR RESIDUE HEM E 84
47FC2SOFTWAREPHE V:33 , CYS V:37 , CYS V:40 , HIS V:41 , HIS V:92BINDING SITE FOR RESIDUE HEM V 138
48FC3SOFTWAREILE D:213 , HIS D:214 , THR D:217 , PHE D:257 , LYS D:264BINDING SITE FOR RESIDUE PLA D 358
49FC4SOFTWAREBCR D:359BINDING SITE FOR RESIDUE BCR K 47
50FC5SOFTWARETRP D:48 , BCR K:47BINDING SITE FOR RESIDUE BCR D 359
51FC6SOFTWAREPHE J:182 , MET J:183 , PHE J:186 , PHE J:206 , CLA N:354BINDING SITE FOR RESIDUE CLA J 365
52FC7SOFTWARECLA J:365 , PHE N:184 , PHE N:188 , GLY N:200BINDING SITE FOR RESIDUE CLA N 354
53FC8SOFTWAREPHE J:158 , MET N:198 , VAL N:201 , PHO N:357BINDING SITE FOR RESIDUE CLA N 355
54FC9SOFTWAREPHO J:366 , PHE N:173BINDING SITE FOR RESIDUE CLA N 356
55GC1SOFTWARETYR J:147 , LEU N:205 , ALA N:208 , LEU N:209 , ALA N:212 , ILE N:213 , CLA N:355BINDING SITE FOR RESIDUE PHO N 357
56GC2SOFTWARELEU J:210 , ALA J:213 , MET J:214 , ALA N:148 , CLA N:356BINDING SITE FOR RESIDUE PHO J 366
57GC3SOFTWAREPRO J:39 , TYR J:94 , PRO J:95 , LEU J:114 , HIS J:118BINDING SITE FOR RESIDUE CLA J 367
58GC4SOFTWAREPRO N:39 , HIS N:117BINDING SITE FOR RESIDUE CLA N 358
59GC5SOFTWAREGLY M:247 , GLY M:248 , THR M:255 , CLA M:1088BINDING SITE FOR RESIDUE CLA M 1078
60GC6SOFTWARETRP M:425 , LEU M:426 , SER M:429 , CLA M:1084 , ASP W:14 , CLA W:64BINDING SITE FOR RESIDUE CLA M 1079
61GC7SOFTWAREILE M:60 , CLA M:1079 , CLA M:1081 , CLA M:1084 , CLA M:1086 , PRO W:17 , PRO W:20 , VAL W:21BINDING SITE FOR RESIDUE CLA W 64
62GC8SOFTWARESER J:124 , CLA J:368 , TYR M:274 , GLY M:277BINDING SITE FOR RESIDUE CLA M 1080
63GC9SOFTWAREALA M:52 , HIS M:56 , LEU M:272 , SER M:275 , CLA M:1086 , CLA M:1088 , CLA W:64BINDING SITE FOR RESIDUE CLA M 1081
64HC1SOFTWAREALA M:172 , HIS M:237BINDING SITE FOR RESIDUE CLA M 1082
65HC2SOFTWARELEU M:279 , ALA M:286 , CLA M:1079 , CLA W:64BINDING SITE FOR RESIDUE CLA M 1084
66HC3SOFTWAREHIS M:53 , PHE M:163 , HIS M:164 , VAL M:167BINDING SITE FOR RESIDUE CLA M 1085
67HC4SOFTWAREPHE M:436 , PHE M:437 , GLY M:440 , CLA M:1081 , CLA W:64BINDING SITE FOR RESIDUE CLA M 1086
68HC5SOFTWARELEU M:125 , GLY M:128 , GLY M:129 , VAL M:130 , TYR M:131BINDING SITE FOR RESIDUE CLA M 1087
69HC6SOFTWARECLA M:1080BINDING SITE FOR RESIDUE CLA J 368
70HC7SOFTWAREHIS M:164 , TYR M:271 , TYR M:274 , SER M:275 , ALA M:278 , LEU M:279 , CLA M:1078 , CLA M:1081BINDING SITE FOR RESIDUE CLA M 1088
71HC8SOFTWAREALA L:212BINDING SITE FOR RESIDUE CLA L 1107
72HC9SOFTWAREVAL L:30 , CLA L:1109 , CLA L:1112 , CLA L:1116 , CLA L:1119BINDING SITE FOR RESIDUE CLA L 1108
73IC1SOFTWAREALA L:22 , HIS L:26 , LEU L:238 , SER L:241 , CLA L:1108BINDING SITE FOR RESIDUE CLA L 1109
74IC2SOFTWAREMET L:60 , TRP L:450BINDING SITE FOR RESIDUE CLA L 1110
75IC3SOFTWAREARG L:68 , LEU L:69 , GLY L:152 , ALA L:155 , CLA L:1113 , CLA L:1114BINDING SITE FOR RESIDUE CLA L 1111
76IC4SOFTWAREALA L:248 , CLA L:1108BINDING SITE FOR RESIDUE CLA L 1112
77IC5SOFTWAREALA L:146 , LEU L:149 , CYS L:150 , TYR L:193 , HIS L:201 , CLA L:1111BINDING SITE FOR RESIDUE CLA L 1113
78IC6SOFTWAREALA L:31 , PHE L:61 , PRO L:64 , PHE L:65 , CLA L:1111BINDING SITE FOR RESIDUE CLA L 1114
79IC7SOFTWAREALA L:243 , CLA L:1120BINDING SITE FOR RESIDUE CLA L 1115
80IC8SOFTWARECLA L:1108BINDING SITE FOR RESIDUE CLA L 1116
81IC9SOFTWAREVAL L:198 , ALA L:200 , ALA L:204BINDING SITE FOR RESIDUE CLA L 1117
82JC1SOFTWARELEU L:19 , ILE L:20 , HIS L:23 , MET L:138 , ILE L:141 , LEU L:145BINDING SITE FOR RESIDUE CLA L 1118
83JC2SOFTWAREHIS L:9 , PHE L:464 , GLY L:465 , TRP L:468 , CLA L:1108BINDING SITE FOR RESIDUE CLA L 1119
84JC3SOFTWAREPRO L:136 , PHE L:139 , HIS L:142 , SER L:240 , ALA L:244 , CLA L:1115BINDING SITE FOR RESIDUE CLA L 1120
85JC4SOFTWAREALA L:110 , HIS L:114BINDING SITE FOR RESIDUE CLA L 1121
86JC5SOFTWAREILE P:26BINDING SITE FOR RESIDUE HEM P 92
87JC6SOFTWAREPHE 0:33 , CYS 0:37 , CYS 0:40 , HIS 0:41 , HIS 0:92BINDING SITE FOR RESIDUE HEM 0 138
88JC7SOFTWAREILE N:213 , HIS N:214 , THR N:217 , PHE N:257 , LYS N:264BINDING SITE FOR RESIDUE PLA N 359

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IZL)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr V:63 -Pro V:64
2Thr 0:63 -Pro 0:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1IZL)

(-) PROSITE Motifs  (3, 8)

Asymmetric/Biological Unit (3, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOCHROME_B559PS00537 Cytochrome b559 subunits heme-binding site signature.PSBE_THEVL14-28  1E:13-27
PSBF_THEVL15-29  1F:14-28
2CYTCPS51007 Cytochrome c family profile.CY550_THEEB50-149
 		  20:24-123
V:24-123
CY550_THEVL50-149
 		  20:24-123
V:24-123
3REACTION_CENTERPS00244 Photosynthetic reaction center proteins signature.PSBD_THEVL180-206
 		  2D:190-216
N:190-216
PSBA_THEVL191-217
 		  2A:191-217
J:191-217

(-) Exons   (0, 0)

(no "Exon" information available for 1IZL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 0 from PDB  Type:PROTEIN  Length:115
 aligned with CY550_THEEB | P0A386 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:124
                                    37        47        57        67        77        87        97       107       117       127       137       147    
         CY550_THEEB     28 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKI  151
               SCOP domains d1izl0_ 0:          Photosystem II                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........---------hhhhhhhhh........................................hhhhhhhh................................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------CYTC  PDB: 0:24-123 UniProt: 50-149                                                                 -- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl 0    2 ELTPEVLTVPL---------TEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKI  125
                                    11|        -|       31        41        51        61        71        81        91       101       111       121    
                                     12        22                                                                                                       


Chain 0 from PDB  Type:PROTEIN  Length:115
 aligned with CY550_THEVL | P0A387 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:124
                                    37        47        57        67        77        87        97       107       117       127       137       147    
         CY550_THEVL     28 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKI  151
               SCOP domains d1izl0_ 0:          Photosystem II                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........---------hhhhhhhhh........................................hhhhhhhh................................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------CYTC  PDB: 0:24-123 UniProt: 50-149                                                                 -- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl 0    2 ELTPEVLTVPL---------TEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKI  125
                                    11|        -|       31        41        51        61        71        81        91       101       111       121    
                                     12        22                                                                                                       


Chain 1 from PDB  Type:PROTEIN  Length:25
                                                          
               SCOP domains d1izl1_ 1: Photosystem II SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ......................... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                1izl 1    1 xxxxxxxxxxxxxxxxxxxxxxxxx   25
                            ||||||||10||||||||20|||||
                            ||||||||9-UNK|||18-UNK|||
                            1-UNK|||10-UNK|||19-UNK||
                             2-UNK|| 11-UNK|| 20-UNK|
                              3-UNK|  12-UNK|  21-UNK
                               4-UNK   13-UNK   22-UNK
                                5-UNK   14-UNK   23-UNK
                                 6-UNK   15-UNK   24-UNK
                                  7-UNK   16-UNK   25-UNK
                                   8-UNK   17-UNK    


Chain A from PDB  Type:PROTEIN  Length:299
 aligned with PSBA_THEVL | P51765 from UniProtKB/Swiss-Prot  Length:360

    Alignment length:313
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
          PSBA_THEVL     32 WFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA  344
               SCOP domains d1izla_ A: Photosystem II                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...................................----...................hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh..................hhhhhhhhhh.......hhhhhh....hhhhhhhhhhhhh.....................----------.....................hhhhhh.....hhhhhhhhhhhh.................................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl A   32 WFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSN----HFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG----------AHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA  344
                                    41        51        61        71        81     |   -|      101       111       121       131       141       151       161       171       181       191       201       211       221       231        |-       251       261       271       281       291       301       311       321       331       341   
                                                                                  87   92                                                                                                                                                 240        251                                                                                             


Chain B from PDB  Type:PROTEIN  Length:427
 aligned with PSBB_THEVL | D0VWR1 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469        
          PSBB_THEVL      - -GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDV  477
               SCOP domains d1izlb_ B: Photosystem II                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhh......hhhhhh........................hhhhhhhh........------..........hhhhhhhh....hhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh................-------.........................hhhhhhhhhh....................hhhhhhhhhh....hhhhhhh....-.........------------------------------------.................................................................................................-.............hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl B    1 MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSG------TGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDP-------QPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWY-xxxxxxxxx------------------------------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-GGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDV  478
                                    10        20        30        40        50        60        70      |  -   |    90       100       110       120       130       140       150       160       170|      180       190       200       210       220       230       240       250      1001|||||||| -         -         -         -    ||1015||||||1025||||||1035||||||1045||||||1055||||||1065||||||1075||||||1085||||||1095||||||1105| |    410       420       430       440       450       460       470        
                                                                                                       77     84                                                                                    171     179                                                                            258 |||||1009-UNK                             1010-UNK|1019-UNK|1028-UNK|1037-UNK|1046-UNK|1055-UNK|1064-UNK|1073-UNK|1082-UNK|1091-UNK|1100-UNK|| |                                                                           
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                                                                                                                                                                                                                                                                                               1004-UNK                                      1014-UNK 1023-UNK 1032-UNK 1041-UNK 1050-UNK 1059-UNK 1068-UNK 1077-UNK 1086-UNK 1095-UNK 1104-UNK                                                                           
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                                                                                                                                                                                                                                                                                                  1007-UNK                                      1017-UNK 1026-UNK 1035-UNK 1044-UNK 1053-UNK 1062-UNK 1071-UNK 1080-UNK 1089-UNK 1098-UNK   403                                                                           
                                                                                                                                                                                                                                                                                                   1008-UNK                                      1018-UNK 1027-UNK 1036-UNK 1045-UNK 1054-UNK 1063-UNK 1072-UNK 1081-UNK 1090-UNK 1099-UNK                                                                                


Chain C from PDB  Type:PROTEIN  Length:349
 aligned with PSBC_THEVL | D0VWR7 from UniProtKB/Swiss-Prot  Length:451

    Alignment length:409
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425         
          PSBC_THEVL     26 KLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFE  434
               SCOP domains d1izlc_ C: Photosystem II                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh..............hhhhhhhhhhhhh.hhhhhhh...............-------...hhhhhhhh..hhhhhhhhhh....hhhhh.................---------------................hhhhhhhhhhhhhhhhhhh...-------.........hhhhhhhhhhhh.hhhhhhhhh........-.............................-----------------------------................................................-.......................hhhhhhhhhhhhh.hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl C   48 KLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEY-------WKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVI---------------KSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHI-------ARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYP-xxxxxxxxxxxxxxxxxxxxxxxxxxxxx-----------------------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-VGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFE  456
                                    57        67        77        87        97       107       117       127       137     |   -   |   157       167       177       187       197 |       -       217       227       237       247    |    -  |    267       277       287       297| ||||1008||||||1018||||||1028|        -         -         -||||||1039||||||1049||||||1059||||||1069|||||||407       417       427       437       447         
                                                                                                                         143     151                                             199             215                                  252     260                                   298 |||||1009-UNK|1018-UNK|1027-UNK                        1030-UNK|1039-UNK|1048-UNK|1057-UNK|1066-UNK|1075-UNK                                                 
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                                                                                                                                                                                                                                                                                       1003-UNK|1012-UNK|1021-UNK|                                1033-UNK|1042-UNK|1051-UNK|1060-UNK|1069-UNK|  407                                                 
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                                                                                                                                                                                                                                                                                            1008-UNK 1017-UNK 1026-UNK                                 1038-UNK 1047-UNK 1056-UNK 1065-UNK 1074-UNK                                                  


Chain D from PDB  Type:PROTEIN  Length:277
 aligned with PSBD_THEVL | D0VWR8 from UniProtKB/Swiss-Prot  Length:342

    Alignment length:319
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333         
          PSBD_THEVL     24 GILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL  342
               SCOP domains d1izld_ D: Photosystem II                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.hhhhhhhhhh............................---------------.......hhhhhh.hhhhhh........hhhhhh..........hhhhhhh...hhhhhh........-----.........hhhhhhhhhh........hhhhhhhhh.hhhhhhhhhhh.....----------------------........................hhhhhhhhhhhhhhhhhhhhhhhhhhh.......................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl D   34 GILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVST---------------EAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLG-----FAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENT----------------------YSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL  352
                                    43        53        63        73      |  -         -  |    103       113       123       133       143       153       163     | 173       183       193       203       213       | -         -         -|      253       263       273       283       293       303       313       323       333       343         
                                                                         80              96                                                                163   169                                                 221                    244                                                                                                            


Chain E from PDB  Type:PROTEIN  Length:35
 aligned with PSBE_THEVL | P12238 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:35
                                    17        27        37     
          PSBE_THEVL      8 RPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGL   42
               SCOP domains d1izle_ E: Photosystem II           SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ------CYTOCHROME_B559-------------- PROSITE
                 Transcript ----------------------------------- Transcript
                1izl E    7 RPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGL   41
                                    16        26        36     


Chain F from PDB  Type:PROTEIN  Length:30
 aligned with PSBF_THEVL | P12239 from UniProtKB/Swiss-Prot  Length:45

    Alignment length:30
                                    23        33        43
          PSBF_THEVL     14 PIFTVRWVAVHTLAVPTIFFLGAIAAMQFI   43
               SCOP domains d1izlf_ F: Photosystem II      SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                PROSITE (2) -CYTOCHROME_B559-------------- PROSITE (2)
                 Transcript ------------------------------ Transcript
                1izl F   13 PIFTVRWVAVHTLAVPTIFFLGAIAAMQFI   42
                                    22        32        42


Chain G from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1izlg_ G: Photosystem II                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................................................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl G    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  220
                            ||||||||10||||||||20||||||||30||||||||40||||||||50||||||||60||||||||70||||||||80||||||||90|||||||100|||||||110|||||||120|||||||130|||||||140|||||||150|||||||160|||||||170|||||||180|||||||190|||||||200|||||||210|||||||220
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Chain H from PDB  Type:PROTEIN  Length:33
                                                                  
               SCOP domains d1izlh_ H: Photosystem II         SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                1izl H    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   33
                            ||||||||10||||||||20||||||||30|||
                            ||||||||9-UNK|||18-UNK|||27-UNK||
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Chain I from PDB  Type:PROTEIN  Length:26
                                                           
               SCOP domains d1izli_ I: Photosystem II  SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                1izl I    1 xxxxxxxxxxxxxxxxxxxxxxxxxx   26
                            ||||||||10||||||||20||||||
                            ||||||||9-UNK|||18-UNK||||
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                                   8-UNK   17-UNK   26-UNK


Chain J from PDB  Type:PROTEIN  Length:299
 aligned with PSBA_THEVL | P51765 from UniProtKB/Swiss-Prot  Length:360

    Alignment length:313
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
          PSBA_THEVL     32 WFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA  344
               SCOP domains d1izlj_ J: Photosystem II                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...................................----...................hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhh..................hhhhhhhhhh.......hhhhhh....hhhhhhhhhhhhh.....................----------.....................hhhhhh.....hhhhhhhhhhhh.................................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl J   32 WFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSN----HFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFG----------AHGYFGRLIFQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA  344
                                    41        51        61        71        81     |   -|      101       111       121       131       141       151       161       171       181       191       201       211       221       231        |-       251       261       271       281       291       301       311       321       331       341   
                                                                                  87   92                                                                                                                                                 240        251                                                                                             


Chain K from PDB  Type:PROTEIN  Length:27
 aligned with PSBK_THEEB | Q9F1K9 from UniProtKB/Swiss-Prot  Length:46

    Alignment length:27
                                    23        33       
          PSBK_THEEB     14 AYAIFDPLVDVLPVIPVLFLALAFVWQ   40
               SCOP domains d1izlk_ K: Photosystem II   SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                1izl K    5 AYAIFDPLVDVLPVIPVLFLALAFVWQ   31
                                    14        24       


Chain K from PDB  Type:PROTEIN  Length:27
 aligned with PSBK_THEVL | P19054 from UniProtKB/Swiss-Prot  Length:37

    Alignment length:27
                                    14        24       
          PSBK_THEVL      5 AYAIFDPLVDVLPVIPVLFFALAFVVQ   31
               SCOP domains d1izlk_ K: Photosystem II   SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                1izl K    5 AYAIFDPLVDVLPVIPVLFLALAFVWQ   31
                                    14        24       


Chain L from PDB  Type:PROTEIN  Length:424
 aligned with PSBB_THEVL | D0VWR1 from UniProtKB/Swiss-Prot  Length:505

    Alignment length:478
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469        
          PSBB_THEVL      - -GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDV  477
               SCOP domains d1izll_ L: Photosystem II                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhh.........................hhhhhh..........-----...........hhhhhhhhhhh.hhhhhhhhhhh.........----.....hhhhhhhhhhhhhhhhhhhhh................-------.........................hhhhhhhhhh....................hhhhhhhhhh....hhhhhhhhhh.-.........------------------------------------.................................................................................................-.............hhhhhhhhhhhh...................hhhhhhhhhhhhh....hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl L    1 MGLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSG-----ETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRD----EPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDP-------QPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWY-xxxxxxxxx------------------------------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-GGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDV  478
                                    10        20        30        40        50        60        70      |  -  |     90       100       110       120    |  130       140       150       160       170|      180       190       200       210       220       230       240       250      1001|||||||| -         -         -         -    ||1015||||||1025||||||1035||||||1045||||||1055||||||1065||||||1075||||||1085||||||1095||||||1105| |    410       420       430       440       450       460       470        
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Chain M from PDB  Type:PROTEIN  Length:347
 aligned with PSBC_THEVL | D0VWR7 from UniProtKB/Swiss-Prot  Length:451

    Alignment length:414
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    
          PSBC_THEVL     21 INLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFE  434
               SCOP domains d1izlm_ M: Photosystem II                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh.....hhhhhhhhhhhhhhhhh..............hhhhhh.....-------.....hhhhhhhhhh.hhhhhhhhhhhh.......----------...hhhhhhhh..hhhhhh.............--...............---------------................hhhhhhhhhhhhhhhh.........--...........hhhhhhhhhhhh.hhhhhhhhh........-.............................-----------------------------................................................-.......................hhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1izl M   43 INLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWG-------VDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETL----------WKDKNKMTTILGFHLIVLGIGALLLVAKAMFF--LYDTWAPGGGDVRVI---------------KSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTT--GWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYP-xxxxxxxxxxxxxxxxxxxxxxxxxxxxx-----------------------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-VGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFE  456
                                    52        62        72        82        92     |   -   |   112       122       132       | -       152       162       172       182  |    192      |  -         -  |    222       232       242       252  |  | 262       272       282       292     |1003||||||1013||||||1023||||||   -         -         -     |1034||||||1044||||||1054||||||1064||||||1074||| |  412       422       432       442       452    
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Chain N from PDB  Type:PROTEIN  Length:277
 aligned with PSBD_THEVL | D0VWR8 from UniProtKB/Swiss-Prot  Length:342

    Alignment length:319
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333         
          PSBD_THEVL     24 GILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL  342
               SCOP domains d1izln_ N: Photosystem II                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.hhhhhhhhhh............................---------------.......hhhhhh.hhhhhh........hhhhhh..........hhhhhhh...hhhhhh........-----.........hhhhhhhhhh........hhhhhhhh..hhhhhhhhhhh.....----------------------........................hhhhhhhhhhhhhhhhhhhhhhhhhh........................................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------REACTION_CENTER            ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl N   34 GILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVST---------------EAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLG-----FAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENT----------------------YSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL  352
                                    43        53        63        73      |  -         -  |    103       113       123       133       143       153       163     | 173       183       193       203       213       | -         -         -|      253       263       273       283       293       303       313       323       333       343         
                                                                         80              96                                                                163   169                                                 221                    244                                                                                                            


Chain O from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                              
               SCOP domains d1izlo_ O: Photosystem II                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................................................................................................................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl O    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  205
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Chain P from PDB  Type:PROTEIN  Length:17
 aligned with PSBE_THEVL | P12238 from UniProtKB/Swiss-Prot  Length:84

    Alignment length:17
                                    35       
          PSBE_THEVL     26 TIPALFIAGWLFVSTGL   42
               SCOP domains d1izlp_ P:        SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE CYT-------------- PROSITE
                 Transcript ----------------- Transcript
                1izl P   25 TIPALFIAGWLFVSTGL   41
                                    34       


Chain Q from PDB  Type:PROTEIN  Length:26
 aligned with PSBF_THEVL | P12239 from UniProtKB/Swiss-Prot  Length:45

    Alignment length:26
                                    28        38      
          PSBF_THEVL     19 RWVAVHTLAVPTIFFLGAIAAMQFIQ   44
               SCOP domains d1izlq_ Q: Photosystem II  SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author ........hhhhh...hhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                PROSITE (2) CYTOCHROME_--------------- PROSITE (2)
                 Transcript -------------------------- Transcript
                1izl Q   18 RWVAVHTLAVPTIFFLGAIAAMQFIQ   43
                                    27        37      


Chain R from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1izlr_ R: Photosystem II                                                                                                                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................................................................................................................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl R    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  220
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Chain S from PDB  Type:PROTEIN  Length:32
                                                                 
               SCOP domains d1izls_ S: Photosystem II        SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                1izl S    2 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   33
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Chain T from PDB  Type:PROTEIN  Length:25
                                                          
               SCOP domains d1izlt_ T: Photosystem II SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                1izl T    2 xxxxxxxxxxxxxxxxxxxxxxxxx   26
                            ||||||||11||||||||21|||||
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Chain U from PDB  Type:PROTEIN  Length:97
                                                                                                                                  
               SCOP domains d1izlu_ U: Photosystem II                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................hhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                1izl U    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   97
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Chain V from PDB  Type:PROTEIN  Length:129
 aligned with CY550_THEEB | P0A386 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         CY550_THEEB     28 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW  156
               SCOP domains d1izlv_ V: Photosystem II                                                                                                         SCOP domains
               CATH domains 1izlV00 V:2-130 Cytochrome c                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhh..........hhhhh.........................hhhhhhhh................................hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------CYTC  PDB: V:24-123 UniProt: 50-149                                                                 ------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl V    2 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW  130
                                    11        21        31        41        51        61        71        81        91       101       111       121         


Chain V from PDB  Type:PROTEIN  Length:129
 aligned with CY550_THEVL | P0A387 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:129
                                    37        47        57        67        77        87        97       107       117       127       137       147         
         CY550_THEVL     28 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW  156
               SCOP domains d1izlv_ V: Photosystem II                                                                                                         SCOP domains
               CATH domains 1izlV00 V:2-130 Cytochrome c                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................hhhhhhhhh..........hhhhh.........................hhhhhhhh................................hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------CYTC  PDB: V:24-123 UniProt: 50-149                                                                 ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                1izl V    2 ELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKW  130
                                    11        21        31        41        51        61        71        81        91       101       111       121         


Chain W from PDB  Type:PROTEIN  Length:27
 aligned with PSBK_THEEB | Q9F1K9 from UniProtKB/Swiss-Prot  Length:46

    Alignment length:27
                                    23        33       
          PSBK_THEEB     14 AYAIFDPLVDVLPVIPVLFLALAFVWQ   40
               SCOP domains d1izlw_ W: Photosystem II   SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                1izl W    5 AYAIFDPLVDVLPVIPVLFLALAFVWQ   31
                                    14        24       


Chain W from PDB  Type:PROTEIN  Length:27
 aligned with PSBK_THEVL | P19054 from UniProtKB/Swiss-Prot  Length:37

    Alignment length:27
                                    14        24       
          PSBK_THEVL      5 AYAIFDPLVDVLPVIPVLFFALAFVVQ   31
               SCOP domains d1izlw_ W: Photosystem II   SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                1izl W    5 AYAIFDPLVDVLPVIPVLFLALAFVWQ   31
                                    14        24       


Chain X from PDB  Type:PROTEIN  Length:25
                                                          
               SCOP domains d1izlx_ X: Photosystem II SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author ......................... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                1izl X    1 xxxxxxxxxxxxxxxxxxxxxxxxx   25
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Chain Y from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                 
               SCOP domains d1izly_ Y: Photosystem II                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................................................................................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1izl Y    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  205
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Chain Z from PDB  Type:PROTEIN  Length:92
                                                                                                                             
               SCOP domains d1izlz_ Z: Photosystem II                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................hhhhhhhhh................................................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                1izl Z    6 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   97
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 28)

Asymmetric/Biological Unit
(-)
Class: Low resolution protein structures (283)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IZL)

(-) Gene Ontology  (24, 128)

Asymmetric/Biological Unit(hide GO term definitions)
Chain 0,V   (CY550_THEEB | P0A386)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0018063    cytochrome c-heme linkage    The linkage of cytochromes and other heme proteins to heme.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain 0,V   (CY550_THEVL | P0A387)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0018063    cytochrome c-heme linkage    The linkage of cytochromes and other heme proteins to heme.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain A,J   (PSBA_THEVL | P51765)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0045156    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0010242    oxygen evolving activity    Catalysis of the reaction: 2 H2O = O2 + 4 H+ + 4 e-. The evolution of oxygen from oxidizing water is carried out by the oxygen evolving complex in photosystem II of plants. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009772    photosynthetic electron transport in photosystem II    A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
    GO:0009635    response to herbicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain B,L   (PSBB_THEVL | D0VWR1)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0045156    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009767    photosynthetic electron transport chain    A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
    GO:0009772    photosynthetic electron transport in photosystem II    A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009521    photosystem    A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain C,M   (PSBC_THEVL | D0VWR7)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0045156    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009767    photosynthetic electron transport chain    A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
    GO:0009772    photosynthetic electron transport in photosystem II    A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009521    photosystem    A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain D,N   (PSBD_THEVL | D0VWR8)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0045156    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    Enables the directed movement of electrons within the cyclic electron transport pathway of photosynthesis.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009772    photosynthetic electron transport in photosystem II    A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain E,P   (PSBE_THEVL | P12238)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009767    photosynthetic electron transport chain    A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009539    photosystem II reaction center    An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain F,Q   (PSBF_THEVL | P12239)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0019684    photosynthesis, light reaction    The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
    GO:0009767    photosynthetic electron transport chain    A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009539    photosystem II reaction center    An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain K,W   (PSBK_THEEB | Q9F1K9)
biological process
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009539    photosystem II reaction center    An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

Chain K,W   (PSBK_THEVL | P19054)
biological process
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009523    photosystem II    A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
    GO:0009539    photosystem II reaction center    An integral membrane complex containing P680, the chlorophyll a molecule that functions as a primary electron donor. In the light, functioning as a water-plastoquinone oxidoreductase, it transfers electrons from water to plastoquinone.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0042651    thylakoid membrane    The pigmented membrane of any thylakoid.

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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSBD_THEVL | D0VWR8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSBE_THEVL | P12238
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSBF_THEVL | P12239
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSBK_THEEB | Q9F1K9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSBK_THEVL | P19054
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CY550_THEEB | P0A386
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  CY550_THEVL | P0A387
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBA_THEVL | P51765
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBB_THEVL | D0VWR1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBC_THEVL | D0VWR7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBD_THEVL | D0VWR8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBE_THEVL | P12238
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBF_THEVL | P12239
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBK_THEEB | Q9F1K9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSBK_THEVL | P19054
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CY550_THEEB | P0A386: 1mz4 1s5l 1w5c 2axt 3kzi 4fby 4ixq 4ixr 4pbu 4pj0 4rvy 4tnh 4tni 4tnj 4tnk 4v62 4v82 5e79 5e7c 5h2f 5kaf 5kai 5tis
        CY550_THEVL | P0A387: 1w5c 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBA_THEVL | P51765: 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBB_THEVL | D0VWR1: 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBC_THEVL | D0VWR7: 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBD_THEVL | D0VWR8: 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBE_THEVL | P12238: 1w5c 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBF_THEVL | P12239: 1w5c 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6
        PSBK_THEEB | Q9F1K9: 1s5l 2axt 3kzi 4fby 4ixq 4ixr 4pbu 4pj0 4rvy 4tnh 4tni 4tnj 4tnk 4v62 4v82 5e79 5e7c 5h2f 5kaf 5kai 5tis
        PSBK_THEVL | P19054: 3a0b 3a0h 3wu2 4il6 4ub6 4ub8 5b5e 5b66 5gth 5gti 5ws5 5ws6

(-) Related Entries Specified in the PDB File

1fe1 1FE1 CONTAINS THE SAME PROTEIN COMPLEX FROM ANOTHER ORGANISM.
1ilx 1ILX CONTAINS THE SAME CHROMOPHORES FROM ANOTHER ORGANISM.