1ZE3 - JenaLib

Molecule 1 - CHAPERONE PROTEIN FIMC
	Chains	:	C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCT-FIMH-FIMC
	Expression System Strain	:	HM125
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	FIMC
	Gene	:	FIMC
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Molecule 2 - FIMH PROTEIN
	Chains	:	H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCT-FIMH-FIMC
	Expression System Strain	:	HM125
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	FIMH PILIN DOMAIN
	Gene	:	FIMH
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Molecule 3 - OUTER MEMBRANE USHER PROTEIN FIMD
	Chains	:	D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PFIMDN (1-125)
	Expression System Strain	:	HM125
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	FIMD N-TERMINAL DOMAIN
	Gene	:	FIMD
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA C:6 , THR C:7 , ARG C:8 , ASP C:192 , TYR C:193 , GLY C:194 , THR H:158	BINDING SITE FOR RESIDUE EDO C 2011
02	AC2	SOFTWARE	ALA C:3 , GLY H:160 , CYS H:161 , ASP H:162 , CYS H:187 , ALA H:188 , HOH H:2063 , HOH H:2078	BINDING SITE FOR RESIDUE EDO H 2012
03	AC3	SOFTWARE	PRO C:124 , ASP C:192 , EDO C:2015 , HOH C:2035 , HOH C:2049 , HOH C:2093	BINDING SITE FOR RESIDUE EDO C 2013
04	AC4	SOFTWARE	LYS C:119 , LEU C:120 , PRO C:123 , HOH C:2222 , HOH C:2233	BINDING SITE FOR RESIDUE EDO C 2014
05	AC5	SOFTWARE	PRO C:124 , ASN C:191 , ASP C:192 , TYR C:193 , EDO C:2013	BINDING SITE FOR RESIDUE EDO C 2015
06	AC6	SOFTWARE	VAL C:2 , LEU C:4 , VAL C:87 , ALA C:89 , ILE C:107 , SER C:109 , HOH C:2038 , EDO H:2017	BINDING SITE FOR RESIDUE EDO C 2016
07	AC7	SOFTWARE	VAL C:2 , SER C:109 , EDO C:2016 , CYS H:161 , PHE H:276 , TYR H:278 , HOH H:2024	BINDING SITE FOR RESIDUE EDO H 2017
08	AC8	SOFTWARE	ARG D:47 , THR D:50 , HOH D:2136	BINDING SITE FOR RESIDUE EDO D 2019
09	AC9	SOFTWARE	ASN C:28 , SER C:29 , GLY C:158 , ASP H:167 , HOH H:2048	BINDING SITE FOR RESIDUE EDO H 2021
10	BC1	SOFTWARE	MET C:204 , GLU C:205 , ALA D:77 , VAL D:79 , ALA D:80	BINDING SITE FOR RESIDUE EDO C 2022
11	BC2	SOFTWARE	ARG C:132	BINDING SITE FOR RESIDUE EDO C 2023
12	BC3	SOFTWARE	GLN C:17 , GLU C:18 , GLN C:19 , HOH C:2230	BINDING SITE FOR RESIDUE EDO C 2024

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 2)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain C from PDB  Type:PROTEIN  Length:205
 aligned with FIMC_ECOLI | P31697 from UniProtKB/Swiss-Prot  Length:241

    Alignment length:205
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236     
           FIMC_ECOLI    37 GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME 241
               SCOP domains d1ze3c1 C:1-121 Periplasmic chaperone FimC                                                                               d1ze3c2 C:122-205 FimC                                                               SCOP domains
               CATH domains -1ze3C01 C:2-118 PapD-like                                                                                            ---1ze3C02 C:122-205  [code=2.60.40.1070, no name defined]                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeee.....eeeeeee.....eeeeeeeeee........eeee..eeeee..eeeeeeeee...........eeeeeeeeeee.ee.hhhhh.eeeeeeeeeeeeeee......hhhhhhhhheeee...eeeeee.....eeeeeeee..ee...eee...eeeeee........eeeee..........ee.... Sec.struct. author
                 SAPs(SNPs) -----------------V-----------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------PILI_CHAPERONE    ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ze3 C   1 GVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME 205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:116
 aligned with FIMD_ECOLI | P30130 from UniProtKB/Swiss-Prot  Length:878

    Alignment length:125
                                    55        65        75        85        95       105       115       125       135       145       155       165     
           FIMD_ECOLI    46 DLYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRAR 170
               SCOP domains d1ze3d1 D         :1-125 Outer membrane usher protein FimD                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhh---------hhhhhh......eeeeeeeee..eeeeeeeeeeee......eeee.hhhhhhhh..hhhhh.hhhhh......hhhhhh...eeeee....eeeee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ze3 D   1 DLYFNPRFL---------LSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRAR 125
                                    |-        20        30        40        50        60        70        80        90       100       110       120     
                                    9        19

Chain H from PDB  Type:PROTEIN  Length:122
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:122
                                   188       198       208       218       228       238       248       258       268       278       288       298  
           FIMH_ECOLI   179 TGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ 300
               SCOP domains d1ze3h_ H: Mannose-specific adhesin FimH                                                                                   SCOP domains
               CATH domains 1ze3H00 H:158-279  [code=2.60.40.1090, no name defined]                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...eee.......ee..eeee....eeeeeeee......................eeeeeee..ee......eeeeee....ee..eeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ze3 H 158 TGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNVQSIIGVTFVYQ 279
                                   167       177       187       197       207       217       227       237       247       257       267       277

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (4, 4)

CATH Domains (3, 3)

Pfam Domains (0, 0)

Gene Ontology (18, 19)

Asymmetric/Biological Unit(hide GO term definitions)

Chain C (FIMC_ECOLI | P31697)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0044183	protein binding involved in protein folding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) that contributes to the process of protein folding.
biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0061077	chaperone-mediated protein folding	The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.
	GO:0043711	pilus organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain D (FIMD_ECOLI | P30130)

molecular function
	GO:0015473	fimbrial usher porin activity	A porin that acts in the assembly of fimbria together with fimbrial chaperone.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0009297	pilus assembly	The assembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies. Pili are variously involved in transfer of nucleic acids, adherence to surfaces, and formation of pellicles. Is required for bacterial conjugation, or can play a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles.
	GO:0055085	transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain H (FIMH_ECOLI | P08191)

molecular function
	GO:0005537	mannose binding	Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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	1ze3
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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	FIMC_ECOLI \| P31697
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	FIMD_ECOLI \| P30130
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	FIMH_ECOLI \| P08191
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Description

Compounds