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(-) Description

Title :  SOLUTION STRUCTURE OF THE TYPE 1 PILUS ASSEMBLY PLATFORM FIMD(25-139)
 
Authors :  M. Nishiyama, R. Horst, T. Herrmann, M. Vetsch, P. Bettendorff, O. Ignatov, M. Grutter, K. Wuthrich, R. Glockshuber, G. Capitani
Date :  15 Apr 05  (Deposition) - 14 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Beta Sheet, Alpha Helix, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Nishiyama, R. Horst, O. Eidam, T. Herrmann, O. Ignatov, M. Vetsch, P. Bettendorff, I. Jelesarov, R. Glockshuber, G. Capitani
Structural Basis Of Chaperone-Subunit Complex Recognition By The Type 1 Pilus Assembly Platform Fimd.
Embo J. V. 24 2075 2005
PubMed-ID: 15920478  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600693
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OUTER MEMBRANE USHER PROTEIN FIMD
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN RESIDUES 70-184
    Gene: FIMD
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZDV)

(-) Sites  (0, 0)

(no "Site" information available for 1ZDV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZDV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZDV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZDV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZDV)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZDV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with FIMD_ECOLI | P30130 from UniProtKB/Swiss-Prot  Length:878

    Alignment length:115
                                    79        89        99       109       119       129       139       149       159       169       179     
           FIMD_ECOLI    70 GQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA 184
               SCOP domains d1zdva1 A:25-139 Outer membrane usher protein FimD                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains PapC_N-1zdvA01 A:25-139                                                                                             Pfam domains
         Sec.struct. author ........eeeeeee..eeeeeeee.eee......eee..hhhhhhhhh.......hhhhh...............eeeee....eeeee.hhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1zdv A  25 GQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINA 139
                                    34        44        54        64        74        84        94       104       114       124       134
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZDV)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: PapC_N] (4)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (FIMD_ECOLI | P30130)
molecular function
    GO:0015473    fimbrial usher porin activity    A porin that acts in the assembly of fimbria together with fimbrial chaperone.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0009297    pilus assembly    The assembly of a pilus, a short filamentous structure on a bacterial cell, flagella-like in structure and generally present in many copies. Pili are variously involved in transfer of nucleic acids, adherence to surfaces, and formation of pellicles. Is required for bacterial conjugation, or can play a role in adherence to surfaces (when it is called a fimbrium), and in the formation of pellicles.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1zdv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIMD_ECOLI | P30130: 1zdx 1ze3 3bwu 3ohn 3rfz 4j3o

(-) Related Entries Specified in the PDB File

1zdx