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Title :   CRYSTAL STRUCTURE OF THE FIMBRIAL ADHESIN FIMH IN COMPLEX WITH ITS HIGH-MANNOSE EPITOPE

Authors :   A. Wellens, C. Garofalo, H. Nguyen, L. Wyns, H. De Greve, S. J. Hultgren, J. Bouckaert

Date :   26 Sep 07 (Deposition) - 13 May 08 (Release) - 30 May 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Pili, Glycan, Mannose, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Wellens, C. Garofalo, H. Nguyen, N. Van Gerven, R. Slattegard, J. P. Hernalsteens, L. Wyns, S. Oscarson, H. De Greve, S. J. Hultgren, J. Bouckaert
Intervening With Urinary Tract Infections Using Anti-Adhesives Based On The Crystal Structure Of The Fimh-Oligomannose-3 Complex.
Plos One V. 3 E2040 2008
PubMed-ID: 18446213 | Reference-DOI: 10.1371/JOURNAL.PONE.0002040

Molecule 1 - PROTEIN FIMH
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMMB91
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	C43
	Expression System Vector Type	:	PLASMID
	Fragment	:	RECEPTOR-BINDING DOMAIN, RESIDUES 22-179
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	K514

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
2	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NI	2	Ligand/Ion	NICKEL (II) ION
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 22)

No.	Name	Count	Type	Full Name
1	MAN	12	Ligand/Ion	ALPHA-D-MANNOSE
2	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NI	-1	Ligand/Ion	NICKEL (II) ION
4	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:45 , ASP A:47 , HOH A:2072 , HOH A:2073 , HOH A:2074 , HOH A:2075	BINDING SITE FOR RESIDUE NI A1159
2	AC2	SOFTWARE	HIS B:45 , ASP B:47 , HOH B:2038 , HOH B:2079 , HOH B:2080 , HOH B:2081	BINDING SITE FOR RESIDUE NI B1159
3	AC3	SOFTWARE	VAL A:112 , SER A:113 , TYR B:55 , ARG B:92 , ARG B:132	BINDING SITE FOR RESIDUE SO4 A1160
4	AC4	SOFTWARE	PHE A:1 , ILE A:13 , ASN A:46 , ASP A:47 , TYR A:48 , THR A:51 , ASP A:54 , GLN A:133 , ASN A:135 , ASP A:140 , PHE A:142 , HOH A:2080 , HOH A:2176 , HOH A:2210 , HOH A:2211 , HOH A:2212 , HOH A:2214 , HOH A:2216 , HOH A:2218	BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1161 TO 1165
5	AC5	SOFTWARE	HOH A:2188 , PHE B:1 , ILE B:13 , ASN B:23 , ASN B:46 , ASP B:47 , TYR B:48 , THR B:51 , ILE B:52 , ASP B:54 , GLN B:133 , ASN B:135 , TYR B:137 , ASP B:140 , HOH B:2047 , HOH B:2166 , HOH B:2173 , HOH B:2190 , HOH B:2191 , HOH B:2192 , HOH B:2193 , HOH B:2195 , HOH B:2197 , HOH B:2200 , HOH B:2201 , HOH B:2202	BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 1160 TO 1164

Asymmetric Unit

No.	Residues
1	A:3	-	A:44
2	B:3	-	B:44

Asymmetric Unit

No.	Residues
1	Phe A:84	-	Pro A:85
2	Phe B:84	-	Pro B:85

(no "SAP(SNP)/Variant" information available for 2VCO)

(no "PROSITE Motif" information available for 2VCO)

(no "Exon" information available for 2VCO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d2vcoa_ A: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains 2vcoA00 A:1-158  [code=2.60.40.1090, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vco A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d2vcob_ B: Mannose-specific adhesin FimH                                                                                                                       SCOP domains
               CATH domains 2vcoB00 B:1-158  [code=2.60.40.1090, no name defined]                                                                                                          CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------Fimbrial-2vco Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------Fimbrial-2vco Pfam domains (2)
           Pfam domains (3) --FimH_man-bind-2vcoB03 B:3-147                                                                                                                    ----------- Pfam domains (3)
           Pfam domains (4) --FimH_man-bind-2vcoB04 B:3-147                                                                                                                    ----------- Pfam domains (4)
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vco B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Pilus subunits (59)

Protein domain: Mannose-specific adhesin FimH (22)

Escherichia coli [TaxId: 562] (22)

1a	d2vcoa_	A:
1b	d2vcob_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: [code=2.60.40.1090, no name defined] (10)

Escherichia coli. Organism_taxid: 562. Strain: k514. (1)

1a	2vcoA00	A:1-158
1b	2vcoB00	B:1-158

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Adhesin (36)

Family: Fimbrial (23)

Escherichia coli (strain K12) (7)

1a	Fimbrial-2vcoB01	B:146-158
1b	Fimbrial-2vcoB02	B:146-158

Clan: no clan defined [family: FimH_man-bind] (6)

Family: FimH_man-bind (6)

Escherichia coli (strain K12) (4)

2a	FimH_man-bind-2vcoB03	B:3-147
2b	FimH_man-bind-2vcoB04	B:3-147

Asymmetric Unit(hide GO term definitions)

Chain A,B (FIMH_ECOLI | P08191)

molecular function
	GO:0005537	mannose binding	Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Phe A:84 - Pro A:85	[ RasMol ]
		Phe B:84 - Pro B:85	[ RasMol ]

Biological Unit
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	2vco
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1kiu	FIMH ADHESIN Q133N MUTANT-FIMC CHAPERONE COMPLEX WITHMETHYL-ALPHA-D-MANNOSE
1klf	FIMH ADHESIN-FIMC CHAPERONE COMPLEX WITH D- MANNOSE
1qun	X-RAY STRUCTURE OF THE FIMC-FIMH CHAPERONE ADHESIN COMPLEX FROM UROPATHOGENIC E.COLI
1tr7	FIMH ADHESIN RECEPTOR BINDING DOMAIN FROM UROPATHOGENIC E.COLI
1uwf	1.7 A RESOLUTION STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF THE FIMH ADHESIN FROM UROPATHOGENIC E. COLI
1ze3	CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF FIMD (N-TERMINAL DOMAIN) WITH FIMC AND THE PILIN DOMAIN OF FIMH

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Sites (5, 5)

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

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