5AB1 - JenaLib

Title :   COMPLEX OF THE FIMH LECTIN WITH A BETA-CYCLODEXTRIN C-LINKED ALPHA-D-MANNOSIDE IN COCRYSTALLIZED ORTHORHOMBIC CRYSTALS AT 2.00 A RESOLUTION

Authors :   J. De Ruyck, J. Bouckaert

Date :   31 Jul 15 (Deposition) - 11 May 16 (Release) - 01 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.96

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cell Adhesion, Bacterial Adhesin, Type 1 Fimbriae, Urinary Tract Infection, Variable Immunoglobulin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. A. Dorta, A. Sivignon, T. Chalopin, T. Dumych, G. Roos, R. Bilyy, D. Deniaud, E. Krammer, J. De Ruyck, M. Lensink, J. Bouckaert, N. Barnich, S. G. Gouin
The Anti-Adhesive Strategy In Crohn'S Disease: Orally Active Mannosides To Decolonize Pathogenic Escherichia Coli From The Gut.
Chembiochem V. 17 936 2016
PubMed-ID: 26946458 | Reference-DOI: 10.1002/CBIC.201600018

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:1 , ILE A:13 , PRO A:26 , ASN A:46 , ASP A:47 , TYR A:48 , ILE A:52 , ASP A:54 , ALA A:122 , GLN A:133 , ASN A:135 , ASP A:140 , PHE A:142 , ASN A:152 , ASP A:153 , HOH A:2001 , HOH A:2177 , HOH A:2178 , HOH A:2179 , HOH A:2180 , TYR B:149	BINDING SITE FOR POLY-SACCHARIDE RESIDUES BCD A 501 THROUGH MAN A 504
2	AC2	SOFTWARE	PHE A:1 , ILE A:13 , PRO A:26 , ASN A:46 , ASP A:47 , TYR A:48 , ILE A:52 , ASP A:54 , LYS A:121 , ALA A:122 , GLN A:133 , ASN A:135 , ASP A:140 , PHE A:142 , ASN A:152 , ASP A:153 , HOH A:2001 , HOH A:2105 , HOH A:2155 , HOH A:2177 , HOH A:2178 , HOH A:2179 , HOH A:2180 , PHE B:1 , ILE B:13 , ASN B:46 , ASP B:47 , TYR B:48 , ILE B:52 , ASP B:54 , ALA B:122 , GLN B:133 , ASN B:135 , ASP B:140 , PHE B:142 , TYR B:149 , ASN B:152 , ASP B:153 , HOH B:2001 , HOH B:2064	BINDING SITE FOR POLY-SACCHARIDE RESIDUES BCD B 501 THROUGH MAN B 504

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ab1 A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTG 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee.....eeeeeeeeee...eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ab1 B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPTG 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 6)

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	Sites
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	Cis Peptide Bonds
		Phe A:84 - Pro A:85	[ RasMol ]
		Phe B:84 - Pro B:85	[ RasMol ]

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