1TR7 - JenaLib

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Title :   FIMH ADHESIN RECEPTOR BINDING DOMAIN FROM UROPATHOGENIC E. COLI

Authors :   J. Bouckaert, J. Berglund, M. Schembri, E. De Genst, L. Cools, M. Wuhre C. S. Hung, J. Pinkner, R. Slattegard, A. Zavialov, D. Choudhury, S. La S. J. Hultgren, L. Wyns, P. Klemm, S. Oscarson, S. D. Knight, H. De Grev

Date :   21 Jun 04 (Deposition) - 03 May 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: B  (1x)
Biol. Unit 2: A  (1x)

Keywords :   Type-1 Pili, Adhesion, Urinary Tract Infections, Uropathogenic E. Coli, Carbohydrate Binding, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Bouckaert, J. Berglund, M. Schembri, E. De Genst, L. Cools, M. Wuhrer, C. S. Hung, J. Pinkner, R. Slattegard, A. Zavialov, D. Choudhury, S. Langermann, S. J. Hultgren, L. Wyns, P. Klemm, S. Oscarson, S. D. Knight, H. De Greve
Receptor Binding Studies Disclose A Novel Class Of High-Affinity Inhibitors Of The Escherichia Coli Fimh Adhesin
Mol. Microbiol. V. 55 441 2005
PubMed-ID: 15659162 | Reference-DOI: 10.1111/J.1365-2958.2004.04415.X

Molecule 1 - FIMH PROTEIN
	Chains	:	B, A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPKL241
	Expression System Strain	:	HB101
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	K12 MG1655

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:		B
Biological Unit 2 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 4)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	DEG	2	Ligand/Ion	BUTYL ALPHA-D-MANNOPYRANOSIDE
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CAC	-1	Ligand/Ion	CACODYLATE ION
2	DEG	1	Ligand/Ion	BUTYL ALPHA-D-MANNOPYRANOSIDE
3	MPD	-1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	DEG	1	Ligand/Ion	BUTYL ALPHA-D-MANNOPYRANOSIDE
3	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:49 , GLU A:50 , THR A:51 , ILE A:52 , THR A:53 , ASN A:136 , TYR B:137	BINDING SITE FOR RESIDUE CAC A 1200
2	AC2	SOFTWARE	PHE A:1 , ILE A:13 , ASN A:46 , ASP A:47 , TYR A:48 , ILE A:52 , ASP A:54 , GLN A:133 , ASN A:135 , ASP A:140 , HOH A:2694 , HOH A:2768	BINDING SITE FOR RESIDUE DEG A 501
3	AC3	SOFTWARE	GLU A:50 , PHE B:1 , ILE B:13 , ASN B:46 , ASP B:47 , ILE B:52 , ASP B:54 , GLN B:133 , ASN B:135 , ASP B:140 , PHE B:142 , HOH B:509 , HOH B:529	BINDING SITE FOR RESIDUE DEG B 502
4	AC4	SOFTWARE	ASN A:33 , VAL A:128 , ASN A:147 , TYR A:149 , HOH A:2716 , HOH A:2750	BINDING SITE FOR RESIDUE MPD A 2692

(no "SS Bond" information available for 1TR7)

Asymmetric Unit

No.	Residues
1	Phe B:84	-	Pro B:85
2	Phe A:84	-	Pro A:85

(no "SAP(SNP)/Variant" information available for 1TR7)

(no "PROSITE Motif" information available for 1TR7)

(no "Exon" information available for 1TR7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d1tr7a_ A: automated matches                                                                                                                                   SCOP domains
               CATH domains 1tr7A00 A:1-158  [code=2.60.40.1090, no name defined]                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tr7 A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with FIMH_ECOLI | P08191 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
           FIMH_ECOLI    22 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 179
               SCOP domains d1tr7b_ B: automated matches                                                                                                                                   SCOP domains
               CATH domains 1tr7B00 B:1-158  [code=2.60.40.1090, no name defined]                                                                                                          CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------Fimbrial-1tr7 Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------Fimbrial-1tr7 Pfam domains (2)
           Pfam domains (3) --FimH_man-bind-1tr7B03 B:3-147                                                                                                                    ----------- Pfam domains (3)
           Pfam domains (4) --FimH_man-bind-1tr7B04 B:3-147                                                                                                                    ----------- Pfam domains (4)
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tr7 B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f (364)

Superfamily: Bacterial adhesins (93)

Family: Pilus subunits (59)

Protein domain: automated matches (16)

Escherichia coli [TaxId: 562] (4)

1a	d1tr7a_	A:
1b	d1tr7b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: [code=2.60.40.1090, no name defined] (10)

Escherichia coli. Organism_taxid: 562. Strain: k12 mg1655. (1)

1a	1tr7A00	A:1-158
1b	1tr7B00	B:1-158

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Adhesin (36)

Family: Fimbrial (23)

Escherichia coli (strain K12) (7)

1a	Fimbrial-1tr7B01	B:146-158
1b	Fimbrial-1tr7B02	B:146-158

Clan: no clan defined [family: FimH_man-bind] (6)

Family: FimH_man-bind (6)

Escherichia coli (strain K12) (4)

2a	FimH_man-bind-1tr7B03	B:3-147
2b	FimH_man-bind-1tr7B04	B:3-147

Asymmetric Unit(hide GO term definitions)

Chain A,B (FIMH_ECOLI | P08191)

molecular function
	GO:0005537	mannose binding	Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009289	pilus	A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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1uwf	1.7 A RESOLUTION STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF THE FIMH ADHESIN FROM UROPATHOGENIC E. COLI

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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